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Etienne Birmele

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Publications

Consensus gene modules strategy identifies candidate blood-based biomarkers for primary Sjogren's disease

Cheïma Boudjeniba , Perrine Soret , Diana Trutschel , Antoine Hamon , Valentin Baloche
Clinical Immunology, 2023, 264, pp.110241. ⟨10.1101/2023.07.05.23292036⟩
Journal articles pasteur-04250559v1
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Machine-learning based feature selection for a non-invasive breathing change detection

Juliana Alves Pegoraro , Sophie Lavault , Nicolas Wattiez , Thomas Similowski , Jésus Gonzalez-Bermejo
BioData Mining, 2021, 14 (1), ⟨10.1186/s13040-021-00265-8⟩
Journal articles hal-03292741v1
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The Transposable Element Environment of Human Genes Differs According to Their Duplication Status and Essentiality

Margot Correa , Emmanuelle Lerat , Etienne E. Birmelé , Franck Samson , Bérengère Bouillon
Genome Biology and Evolution, 2021, 13 (5), ⟨10.1093/gbe/evab062⟩
Journal articles hal-03367114v1
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Identification of Deregulated Mechanisms Specific to Bladder Cancer Subtypes

Magali Champion , Julien Chiquet , Pierre Neuvial , Mohamed Elati , François Radvanyi
Journal of Bioinformatics and Computational Biology, 2021, 19 (1), ⟨10.1142/S0219720021400035⟩
Journal articles hal-03079966v1

Predicting breast cancer metastasis from whole-blood transcriptomic measurements

Einar Holsbø , Vittorio Perduca , Lars Ailo Ailo Bongo , Eiliv Lund , Etienne Birmele
BMC Research Notes, 2020, 13 (1), ⟨10.1186/s13104-020-05088-0⟩
Journal articles hal-02872374v1
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On the Minimum Eccentricity Isometric Cycle Problem

Etienne Birmele , Fabien de Montgolfier , Léo Planche
Electronic Notes in Theoretical Computer Science, 2019, 346, pp.159-169. ⟨10.1016/j.entcs.2019.08.015⟩
Journal articles hal-02430756v1
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A model for gene deregulation detection using expression data

Thomas Picchetti , Julien Chiquet , Mohamed Elati , Pierre Neuvial , Rémy Nicolle
BMC Systems Biology, 2015, 9, ⟨10.1186/1752-0509-9-S6-S6⟩
Journal articles hal-01154154v2
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Telling metabolic stories to explore metabolomics data: a case study on the yeast response to cadmium exposure

Paulo Vieira Milreu , Cecilia Coimbra Klein , Ludovic Cottret , Vicente Acuña , Etienne E. Birmelé
Bioinformatics, 2014, 30 (1), pp.61-70. ⟨10.1093/bioinformatics/btt597⟩
Journal articles hal-00922567v1

Model Selection in Overlapping Stochastic Block Models

Pierre Latouche , Etienne E. Birmelé , Christophe Ambroise
Electronic Journal of Statistics , 2014, 8, pp.762-794. ⟨10.1214/14-EJS903⟩
Journal articles hal-00990277v1
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Telling stories: Enumerating maximal directed acyclic graphs with a constrained set of sources and targets

Vicente Acuña , Etienne Birmelé , Ludovic Cottret , Pierluigi Crescenzi , Fabien Jourdan
Theoretical Computer Science, 2012, 457, pp.1--9. ⟨10.1016/j.tcs.2012.07.023⟩
Journal articles hal-00764025v1
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Detecting local network motifs

Etienne Birmele
Electronic Journal of Statistics , 2012, 6, pp.908-933. ⟨10.1214/12-EJS698⟩
Journal articles hal-00726215v1

Variational Bayesian Inference and Complexity Control for Stochastic Block Models

Pierre Latouche , Etienne E. Birmelé , Christophe Ambroise
Statistical Modelling, 2012, 12 (1), pp.93-115. ⟨10.1177/1471082X1001200105⟩
Journal articles hal-00624536v1

OVERLAPPING STOCHASTIC BLOCK MODELS WITH APPLICATION TO THE FRENCH POLITICAL BLOGOSPHERE

Pierre Latouche , Etienne Birmelé , Christophe Ambroise
Annals of Applied Statistics, 2011, 5 (1), pp.309 - 336. ⟨10.1214/10-AOAS382⟩
Journal articles hal-02652556v1

Analyse du nombre de perturbations lors du maintien d'un arbre de connexion de faible diamètre

Etienne Birmele , François Delbot , Christian Laforest
Revue des Sciences et Technologies de l'Information - Série TSI : Technique et Science Informatiques, 2011, 30 (7), pp.781--808. ⟨10.3166/tsi.30.781-808⟩
Journal articles hal-00730900v1

Tree-width of graphs without a 3 by 3 graph minor

Etienne Birmele , Adrian Bondy , Bruce Reed
Discrete Applied Mathematics, 2009, 157 (12), pp.2577-2596
Journal articles hal-00730791v1

Mean analysis of an online algorithm for the vertex cover problem

Etienne Birmele , François Delbot , Christian Laforest
Information Processing Letters, 2009, 109 (9), pp.436--439. ⟨10.1016/j.ipl.2008.12.021⟩
Journal articles hal-00730897v1

A scale-free graph model based on bipartite graphs

Etienne Birmele
Discrete Applied Mathematics, 2009, 157 (10), pp.2267-2284. ⟨10.1016/j.dam.2008.06.052⟩
Journal articles hal-00730793v1
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Identification of functional modules based on transcriptional regulation structure

Etienne Birmele , Mohamed Elati , Céline Rouveirol , Christophe Ambroise
BMC Proceedings, 2008, 2 (4), pp.S4
Journal articles hal-00730904v1

Every longest circuit of a $3$-connected, $K_ {3,3}$-minor free graph has a chord

Etienne Birmele
Journal of Graph Theory, 2008, pp.293-298
Journal articles hal-00730767v1

The Erdos-Posa property for long circuits

Etienne Birmele , Adrian Bondy , Bruce Reed
Combinatorica, 2007, pp.135-145
Journal articles hal-00730773v1
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Network motifs : mean and variance for the count

Catherine Matias , Sophie S. Schbath , Etienne Birmelé , Jean-Jacques J.-J. Daudin , Stephane S. Robin
REVSTAT - Statistical Journal, 2006, 4 (1), pp.31-51
Journal articles hal-02655236v1

Arc-chromatic number of digraphs in which every vertex has bounded outdegree or bounded indegree

Stéphane Bessy , Etienne E. Birmelé , Frédéric Havet
Journal of Graph Theory, 2006, 53 (4), pp.315-332. ⟨10.1002/jgt.20189⟩
Journal articles lirmm-00153978v1

Tree-width and circumference of graphs

Etienne Birmele
Journal of Graph Theory, 2003, pp.24-25
Journal articles hal-00730764v1
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Identification of deregulated transcription factors involved in subtypes of cancers

Magali Champion , Julien Chiquet , Pierre Neuvial , Mohamed Elati , François Radvanyi
Proceedings of the 12th International Conference on Bioinformatics and Computational Biology, Mar 2020, SAN FRANCISCO, United States. pp.1--10, ⟨10.29007/v7qj⟩
Conference papers hal-01516892v2

Decomposing a Graph into Shortest Paths with Bounded Eccentricity

Etienne E. Birmelé , Fabien de Montgolfier , Léo Planche , Laurent Viennot
28th International Symposium on Algorithms and Computation (ISAAC 2017), Dec 2017, Phuket, Thailand. ⟨10.4230/LIPIcs.ISAAC.2017.15⟩
Conference papers hal-01671718v1
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Minimum Eccentricity Shortest Path Problem: An Approximation Algorithm and Relation with the k-Laminarity Problem

Etienne E. Birmelé , Fabien de Montgolfier , Léo Planche
COCOA 2016, Combinatorial Optimization and Applications - 10th International Conference, Dec 2016, Hong Kong, China. pp.216 - 229, ⟨10.1007/978-3-319-48749-6_16⟩
Conference papers hal-01424469v1
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Incremental complexity of a bi-objective hypergraph transversal problem

Ricardo Andrade , Etienne E. Birmelé , Arnaud Mary , Thomas Picchetti , Marie-France Sagot
Fundamentals of Computation Theory (FCT2015), Aug 2015, Gdansk, Poland. pp.202-213, ⟨10.1007/978-3-319-22177-9_16⟩
Conference papers hal-01149392v1

Optimal Listing of Cycles and st-Paths in Undirected Graphs

Etienne E. Birmelé , Rui Ferreira , Roberto Grossi , Andrea Marino , Nadia Pisanti
24th Annual ACM-SIAM Symposium on Discrete Algorithms, Jan 2013, New Orleans, United States
Conference papers hal-00751345v1
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Efficient Bubble Enumeration in Directed Graphs

Etienne E. Birmelé , Pierluigi Crescenzi , Rui Ferreira , Roberto Grossi , Vincent Lacroix
String Processing and Information Retrieval (SPIRE), Oct 2012, Cartagena, Colombia. pp.118-129, ⟨10.1007/978-3-642-34109-0_13⟩
Conference papers hal-00738927v1

NeMo: Fast Count of Network Motifs

Michel M. Koskas , Gilles G. Grasseau , Etienne E. Birmelé , Sophie S. Schbath , Stephane S. Robin
Journées Ouvertes Biologie Informatique Mathématiques (JOBIM), Jun 2011, Paris, France. pp.53-60
Conference papers hal-01000038v1

Telling Stories

Vicente Acuña , Etienne Birmele , Ludovic Cottret , Pierluigi Crescenzi , Fabien Jourdan
ICALP 2011 satellite workshop: Graph Algorithms and Applications (GA), 2011, Zurich, Switzerland. ⟨10.1016/j.tcs.2012.07.023⟩
Conference papers hal-00748788v1

NeMo: Fast Count and Statistical Significance of Network Motifs

Michel M. Koskas , Gilles G. Grasseau , Etienne E. Birmelé , Sophie S. Schbath , Stephane S. Robin
MARAMI 2011 : 2. Conférence sur les Modèles et l'Analyse des Réseaux : Approches Mathématiques et Informatique, Oct 2011, Grenoble, France. n.p
Conference papers hal-00999907v1
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Enumerating Chemical Organisations in Consistent Metabolic Networks: Complexity and Algorithms

Paulo Vieira Milreu , Vicente Acuña , Etienne E. Birmelé , Pierluigi Crescenzi , Alberto Marchetti-Spaccamela
Workshop on Algorithms in Bioinformatics (WABI), Sep 2010, Liverpool, United Kingdom. pp.226-237, ⟨10.1007/978-3-642-15294-8_19⟩
Conference papers hal-00751339v1
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Modèles de graphe aléatoire à classes chevauchantes pour l'analyse des réseaux

Pierre Latouche , Etienne E. Birmelé , Christophe Ambroise
42èmes Journées de Statistique, 2010, Marseille, France, France
Conference papers inria-00494820v1
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A latent logistic model to uncover overlapping clusters in networks

Pierre Latouche , Etienne E. Birmelé , Christophe Ambroise
Atelier AGS (Apprentissage et Graphes pour les Systèmes complexes), May 2009, Hammamet, Tunisia. pp.3-8
Conference papers hal-00629310v1
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Uncovering overlapping clusters in biological networks

Pierre Latouche , Etienne E. Birmelé , Christophe Ambroise
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jun 2009, Nantes, France. pp.28
Conference papers hal-00629321v1
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Overlapping clustering methods for networks

Pierre Latouche , Etienne E. Birmelé , Christophe Ambroise
Edoardo M. Airoldi, David Blei, Elena A. Erosheva, Stephen E. Fienberg. Chapman and Hall/CRC. Handbook of Mixed Membership Models and Their Applications, Chapman and Hall/CRC, in press, 2014
Book sections hal-00984395v1
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Bayesian methods for graph clustering

Pierre Latouche , Etienne E. Birmelé , Christophe Ambroise
Andreas Fink, Berthold Lausen, Wilfried Seidel and Alfred Ultsch. Advances in Data Analysis, Data Handling and Business Intelligence, Springer, pp.229-239, 2009, Studies in Classification, Data Analysis, and Knowledge Organization, 978-3-642-01043-9. ⟨10.1007/978-3-642-01044-6⟩
Book sections hal-00629294v1

Brambles, prisms and grids

Etienne Birmele , Adrian Bondy , Bruce Reed
Graph Theory in Paris - Proceedings of a Conference in Memory of Claude Berge, Birkhauser, pp.37-44, 2007
Book sections hal-00730790v1
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Etude structurelle des réseaux : modèles aléatoires, motifs et cycles.

Etienne Birmele
Bio-informatique [q-bio.QM]. Université d'Evry-Val d'Essonne, 2011
Habilitation à diriger des recherches tel-00750375v1