ELODIE DRULA

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Publications

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Three pairs of fungal Trametes strains isolated from distinct geographic origins show conserved genomic features and adaptive response to plant biomass

Elodie Drula , David Navarro , Julien Lambert , Delphine Chaduli , Anne Lomascolo et al.
Bioresource Technology, 2026, 446, pp.133990. ⟨10.1016/j.biortech.2026.133990⟩
Article dans une revue hal-05507610 v1
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Snow- and ice-ecosystem cleaning capability of the pucciniomycotinous yeast Phenoliferia psychrophenolica

Jade Ezzedine , Pierre Guenzi-Tiberi , Gaëlle Villain , Riccardo Aiese Cigliano , Yacine Diagne et al.
Communications Biology, 2025, 8 (1), pp.1084. ⟨10.1038/s42003-025-08506-w⟩
Article dans une revue hal-05285714 v1
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Division of the large and multifunctional glycoside hydrolase family 2: high functional specificity and biochemical assays in the uncharacterized subfamilies

Annie Lebreton , Marie-Line Garron , Marlene Vuillemin , Bo Pilgaard , Bastian Hornung et al.
Biotechnology for Biofuels and Bioproducts, 2025, 18 (1), pp.68. ⟨10.1186/s13068-025-02669-8⟩
Article dans une revue hal-05285721 v1

A Comparison of the Biotechnological Potential of Marine and Terrestrial Species of Two Orders of Sordariomycete Fungi

Raquel Ledo Doval , Astrid Müller , Daren Brown , Derek Johnson , C Alisha Quandt et al.
Marine Biotechnology, 2025, 27 (4), pp.103. ⟨10.1007/s10126-025-10484-3⟩
Article dans une revue hal-05285750 v1

The FUNG-GROWTH database: linking fungal phenotype to genome

Ronald de Vries , Ad Wiebenga , Guillermo Aguilar Osorio , Maria Victoria Aguilar Pontes , Evy Battaglia et al.
Microbiology Resource Announcements, 2025, 14 (9), pp.e0037825. ⟨10.1128/mra.00378-25⟩
Article dans une revue hal-05285736 v1
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Wood decay under anoxia by the brown-rot fungus Fomitopsis pinicola

Robert Röllig , Annie Lebreton , Lucia Grenga , Rosalie Cresswell , Signe Lett et al.
Nature Communications, 2025, 16 (1), pp.7352. ⟨10.1038/s41467-025-62567-3⟩
Article dans une revue hal-05242906 v1
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Comparative genomics of Aspergillus nidulans and section Nidulantes

Sebastian Theobald , Tammi Vesth , Jane L Nybo , Jens C Frisvad , Inge Kjærbølling et al.
Current Research in Microbial Sciences, 2025, 8, pp.100342. ⟨10.1016/j.crmicr.2025.100342⟩
Article dans une revue hal-04968952 v1

Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae

Gregory Bonito , Shingo Miyauchi , Richard Hayes , Hao Tan , Alan Kuo et al.
Current Biology, 2025, 35 (17), pp.4135-4150.e6. ⟨10.1016/j.cub.2025.07.037⟩
Article dans une revue hal-05285742 v1
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Functional Carbohydrate-Active Enzymes Acquired by Horizontal Gene Transfer from Plants in the Whitefly <i>Bemisia tabaci</i>

Dominique Colinet , Mireille Haon , Elodie Drula , Mathilde Boyer , Sacha Grisel et al.
Genome Biology and Evolution, 2025, 17 (2), pp.evaf012. ⟨10.1093/gbe/evaf012⟩
Article dans une revue hal-04968956 v1
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Bacterial polysaccharide lyase family 33: Specificity from an evolutionarily conserved binding tunnel

Mélanie Loiodice , Elodie Drula , Zak Mciver , Svetlana Antonyuk , Arnaud Baslé et al.
Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (7), pp.e2421623122. ⟨10.1073/pnas.2421623122⟩
Article dans une revue hal-04968947 v1
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Whole genome sequence, CAZyme repertoire and sugar metabolic model of the phytopathogenic fungus Kretzschmaria zonata GFP 132

Mariana Regina Almas Do Carmo , Alessia Manassero , Rafaela Zandonade Ventorim , Mao Peng , Tulio Morgan et al.
Molecular Genetics and Genomics, 2025, 300 (1), pp.47. ⟨10.1007/s00438-025-02253-7⟩
Article dans une revue hal-05285755 v1
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Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses

Andrei S Steindorff , Maria Victoria Aguilar-Pontes , Aaron J Robinson , Bill Andreopoulos , Kurt Labutti et al.
Communications Biology, 2024, 7 (1), pp.1124. ⟨10.1038/s42003-024-06681-w⟩
Article dans une revue hal-04882241 v1
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Genome evolution and transcriptome plasticity is associated with adaptation to monocot and dicot plants in Colletotrichum fungi

Riccardo Baroncelli , José Cobo-Díaz , Tiziano Benocci , Mao Peng , Evy Battaglia et al.
GigaScience, 2024, 13, pp.giae036. ⟨10.1093/gigascience/giae036⟩
Article dans une revue hal-04915149 v1
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Streptomyces castrisilvae sp. nov. and Streptomyces glycanivorans sp. nov., novel soil streptomycetes metabolizing mutan and alternan

Tove Widén , Albert Tafur Rangel , Vincent Lombard , Elodie Drula , Scott Mazurkewich et al.
International Journal of Systematic and Evolutionary Microbiology, 2024, 74 (9), pp.006514. ⟨10.1099/ijsem.0.006514⟩
Article dans une revue hal-04882192 v1
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Extreme overall mushroom genome expansion in Mycena s.s. irrespective of plant hosts or substrate specializations

Christoffer Bugge Harder , Shingo Miyauchi , Máté Virágh , Alan Kuo , Ella Thoen et al.
Cell Genomics, 2024, 4 (7), pp.100586. ⟨10.1016/j.xgen.2024.100586⟩
Article dans une revue hal-04795684 v1
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Candidate genes involved in biosynthesis and degradation of the main extracellular matrix polysaccharides of brown algae and their probable evolutionary history

Lisa Mazéas , Ahlem Bouguerba-Collin , J. Mark Cock , France Denoeud , Olivier Godfroy et al.
BMC Genomics, 2024, 25 (1), pp.950. ⟨10.1186/s12864-024-10811-3⟩
Article dans une revue hal-04734202 v1

Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria

Neha Sahu , Boris Indic , Johanna Wong-Bajracharya , Zsolt Merényi , Huei-Mien Ke et al.
Nature Microbiology, 2023, 8 (9), pp.1668-1681. ⟨10.1038/s41564-023-01448-1⟩
Article dans une revue hal-04382375 v1

A global phylogenomic analysis of the shiitake genus Lentinula

Sean Sierra-Patev , Byoungnam Min , Miguel Naranjo-Ortiz , Brian Looney , Zachary Konkel et al.
Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (10), pp.e2214076120. ⟨10.1073/pnas.2214076120⟩
Article dans une revue hal-04144610 v1
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Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

Yogesh K Gupta , Francismar C Marcelino-Guimarães , Cécile Lorrain , Andrew Farmer , Sajeet Haridas et al.
Nature Communications, 2023, 14 (1), pp.1835. ⟨10.1038/s41467-023-37551-4⟩
Article dans une revue hal-04143167 v1

Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

Brian Looney , Shingo Miyauchi , Emmanuelle Morin , Elodie Drula , Pierre Emmanuel Courty et al.
New Phytologist, 2022, 233 (5), pp.2294-2309. ⟨10.1111/nph.17892⟩
Article dans une revue hal-04033326 v1
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The carbohydrate-active enzyme database: functions and literature

Elodie Drula , Marie-Line Garron , Suzan Dogan , Vincent Lombard , Bernard Henrissat et al.
Nucleic Acids Research, 2022, 50 (D1), pp.D571-D577. ⟨10.1093/nar/gkab1045⟩
Article dans une revue hal-03588994 v1
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Functional exploration of the glycoside hydrolase family GH113

Marie Couturier , Mélanie Touvrey-Loiodice , Nicolas Terrapon , Elodie Drula , Laurine Buon et al.
PLoS ONE, 2022, 17 (4), pp.1-14. ⟨10.1371/journal.pone.0267509⟩
Article dans une revue hal-03656671 v1
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Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species

Yi-Fei Sun , Annie Lebreton , Jia-Hui Xing , Yu-Xuan Fang , Jing Si et al.
Journal of Fungi, 2022, 8 (3), pp.311. ⟨10.3390/jof8030311⟩
Article dans une revue hal-03627194 v1

Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap ( Lactarius ) mushrooms

Annie Lebreton , Nianwu Tang , Alan Kuo , Kurt Labutti , William Andreopoulos et al.
New Phytologist, 2022, 235 (1), pp.306-319. ⟨10.1111/nph.18143⟩
Article dans une revue hal-03946660 v1
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Exploring the impact of Verticillium wilt disease on the mechanical properties of elementary flax (Linum usitatissimum L.) fibres

Lucile Nuez , Sylvie Durand , Alessia Melelli , Jean-Guy Berrin , Mireille Haon et al.
Industrial Crops and Products, 2022, 182, pp.114900. ⟨10.1016/j.indcrop.2022.114900⟩
Article dans une revue hal-03656635 v1

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

Gang Wu , Shingo Miyauchi , Emmanuelle Morin , Alan Kuo , Elodie Drula et al.
New Phytologist, 2022, 10 (4), ⟨10.1111/nph.17858⟩
Article dans une revue hal-03473169 v1
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Assembly and synthesis of the extracellular matrix in brown algae

Lisa Mazéas , Rina Yonamine , Tristan Barbeyron , Bernard Henrissat , Elodie Drula et al.
Seminars in Cell and Developmental Biology, In press, 134, pp.112-124. ⟨10.1016/j.semcdb.2022.03.005⟩
Article dans une revue hal-03627114 v1
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A Putative Lignin Copper Oxidase from Trichoderma reesei

Mariane Daou , Alexandra Bisotto , Mireille Haon , Lydie Oliveira Correia , Betty Cottyn et al.
Journal of Fungi, 2021, 7 (8), pp.643. ⟨10.3390/jof7080643⟩
Article dans une revue hal-03328494 v1
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Genetic determinants of endophytism in the Arabidopsis root mycobiome

Fantin Mesny , Shingo Miyauchi , Thorsten Thiergart , Brigitte Pickel , Lea Atanasova et al.
Nature Communications, 2021, 12 (1), pp.7227. ⟨10.1038/s41467-021-27479-y⟩
Article dans une revue hal-03508738 v1
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Fungal treatment for the valorization of technical soda lignin

Mariane Daou , Clementina Farfan Soto , Amel Majira , Laurent Cézard , Betty Cottyn et al.
Journal of Fungi, 2021, 7 (1), pp.39. ⟨10.3390/jof7010039⟩
Article dans une revue hal-03120945 v1
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Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

Hayat Hage , Shingo Miyauchi , Máté Virágh , Elodie Drula , Byoungnam Min et al.
Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15423⟩
Article dans une revue hal-03226505 v1

Niche differentiation and evolution of the wood decay machinery in the invasive fungus Serpula lacrymans

Jaqueline Hess , Sudhagar Balasundaram , Renee Bakkemo , Elodie Drula , Bernard Henrissat et al.
The International Society of Microbiologial Ecology Journal, 2021, 15 (2), pp.592-604. ⟨10.1038/s41396-020-00799-5⟩
Article dans une revue hal-03167198 v1
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Identification of Copper-Containing Oxidoreductases in the Secretomes of Three Colletotrichum Species with a Focus on Copper Radical Oxidases for the Biocatalytic Production of Fatty Aldehydes

David Ribeaucourt , Safwan Saker , David Navarro , Bastien Bissaro , Elodie Drula et al.
Applied and Environmental Microbiology, 2021, 87 (24), pp.e01526-21. ⟨10.1128/AEM.01526-21⟩
Article dans une revue hal-03619439 v1

Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates

Jennifer Brown , Candice Swift , Stephen Mondo , Susanna Seppala , Asaf Salamov et al.
Biotechnology for Biofuels, 2021, 14 (1), pp.234. ⟨10.1186/s13068-021-02083-w⟩
Article dans une revue hal-03508676 v1

Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes

Mario Franco , Jennifer Wisecaver , a Elizabeth Arnold , Yu-Ming Ju , Jason Slot et al.
New Phytologist, 2021, ⟨10.1111/nph.17873⟩
Article dans une revue hal-03508718 v1
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Genomic analysis enlightens agaricales Lifestyle Evolution and increasing peroxidase diversity

Francisco Ruiz-Dueñas , José Barrasa , Marisol Sánchez-García , Susana Camarero , Shingo Miyauchi et al.
Molecular Biology and Evolution, 2020, 38 (4), p. 1428-1446. ⟨10.1093/molbev/msaa301⟩
Article dans une revue hal-03099933 v1
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Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions

Wissal Ben Ali , David Navarro , Abhishek Kumar , Elodie Drula , Annick Turbé-Doan et al.
Marine drugs, 2020, 18 (9), pp.1-21. ⟨10.3390/md18090461⟩
Article dans une revue hal-02953538 v1
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Conserved white rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus

Shingo Miyauchi , Hayat Hage , Elodie Drula , Laurence Lesage-Meessen , Jean-Guy Berrin et al.
DNA Research, 2020, ⟨10.1093/dnares/dsaa011⟩
Article dans une revue hal-02868456 v2
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Shingo Miyauchi , Enikő Kiss , Alan Kuo , Elodie Drula , Annegret Kohler et al.
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-18795-w⟩
Article dans une revue hal-03082507 v1

Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

Emmanuelle Morin , Shingo Miyauchi , Hélène San Clemente , Eric C. H. Chen , Adrian Pelin et al.
New Phytologist, 2019, 222 (3), pp.1584-1598. ⟨10.1111/nph.15687⟩
Article dans une revue hal-02181069 v1
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Investigating Host Microbiota Relationships Through Functional Metagenomics

Elisabeth Laville , Josette Perrier , Nada Bejar , Marc Maresca , Jeremy Esque et al.
Frontiers in Microbiology, 2019, 10, 12 p. ⟨10.3389/fmicb.2019.01286⟩
Article dans une revue hal-02315852 v1

Comparative genomics reveals unique wood‐decay strategies and fruiting body development in the Schizophyllaceae

Neha Sahu , Krisztina Krizsán , Balázs Bálint , Gabor G Kovacs , Brigitta Kiss et al.
New Phytologist, 2019, 224 (2), pp.902-915. ⟨10.1111/nph.16032⟩
Article dans une revue hal-02588296 v1

A metagenomics investigation of carbohydrate-active enzymes along the goat and camel intestinal tract

Saad Al-Masaudi , Abdessamad El Kaoutari , Elodie Drula , Elrashdy Redwan , Vincent Lombard et al.
International Microbiology, 2019, 22 (4), pp.429-435. ⟨10.1007/s10123-019-00068-2⟩
Article dans une revue hal-02612526 v1
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Bacteroidetes use thousands of enzyme combinations to break down glycans

Pascal Lapébie , Vincent Lombard , Elodie Drula , Nicolas Terrapon , Bernard Henrissat
Nature Communications, 2019, 10 (2043), pp.1. ⟨10.1038/s41467-019-10068-5⟩
Article dans une revue hal-02588181 v1

Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring

Hao Tan , Annegret Kohler , Renyun Miao , Tianhai Liu , Qiang Zhang et al.
Environmental Microbiology, 2019, 21 (10), pp.3909-3926. ⟨10.1111/1462-2920.14741⟩
Article dans une revue hal-02311393 v1
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Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass

Shingo Miyauchi , Anaïs Rancon , Elodie Drula , Hayat Hage , Delphine Chaduli et al.
Biotechnology for Biofuels, 2018, 11, ⟨10.1186/s13068-018-1198-5⟩
Article dans une revue hal-01867992 v1
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Cultivation and sequencing of rumen microbiome members from the Hungate1000 Collection

Rekha Seshadri , Sinead Leahy , Graeme Attwood , Koon Hoong Teh , Suzanne Lambie et al.
Nature Biotechnology, 2018, 36 (4), pp.359-367. ⟨10.1038/nbt.4110⟩
Article dans une revue hal-02094598 v1
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PULDB: the expanded database of Polysaccharide Utilization Loci

Nicolas Terrapon , Vincent Lombard , Elodie Drula , Pascal Lapébie , Saad Al-Masaudi et al.
Nucleic Acids Research, 2018, 46 (D1), pp.D677-D683. ⟨10.1093/nar/gkx1022⟩
Article dans une revue hal-02094620 v1
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Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri

Tammi C. Vesth , Jane L. Nybo , Sebastian Theobald , Jens C. Frisvad , Thomas O. Larsen et al.
Nature Genetics, 2018, 50 (12), pp.1688-1695. ⟨10.1038/s41588-018-0246-1⟩
Article dans une revue hal-02094492 v1
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Lavender- and lavandin-distilled straws: an untapped feedstock with great potential for the production of high-added value compounds and fungal enzymes

Laurence Lesage-Meessen , Marine Bou , Christian Ginies , Didier Chevret , David Navarro et al.
Biotechnology for Biofuels, 2018, 11 (1), pp.217. ⟨10.1186/s13068-018-1218-5⟩
Article dans une revue hal-02467725 v1
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A Metagenomics Investigation of Carbohydrate-Active Enzymes along the Gastrointestinal Tract of Saudi Sheep

Saad Al-Masaudi , Abdessamad El Kaoutari , Elodie Drula , Hussein Al-Mehdar , Elrashdy M. Redwan et al.
Frontiers in Microbiology, 2017, 8, ⟨10.3389/fmicb.2017.00666⟩
Article dans une revue hal-01595245 v1

A bioinformatics analysis of 3400 lytic polysaccharide oxidases from family AA9

Nicolas Lenfant , Matthieu Hainaut , Nicolas Terrapon , Elodie Drula , Vincent Lombard et al.
Carbohydrate Research, 2017, 448, pp.166-174. ⟨10.1016/j.carres.2017.04.012⟩
Article dans une revue hal-01595066 v1
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The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

Anthony Levasseur , Anne Lomascolo , Olivier Chabrol , Francisco J Ruiz-Dueñas , Eva Boukhris-Uzan et al.
BMC Genomics, 2014, 15 (1), pp.486. ⟨10.1186/1471-2164-15-486⟩
Article dans une revue hal-01204353 v1
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The carbohydrate-active enzymes database (CAZy) in 2013

Bernard Henrissat , Vincent Lombard , Elodie Drula , Pedro Coutinho , Hemalatha Golaconda Ramulu
Nucleic Acids Research, 2014, 42 (D1), pp.D490-D495. ⟨10.1093/nar/gkt1178⟩
Article dans une revue inserm-04405153 v1
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Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

Anthony Levasseur , Elodie Drula , Vincent Lombard , Pedro M Coutinho , Bernard Henrissat
Biotechnology for Biofuels, 2013, 6 (41), pp.1-14. ⟨10.1186/1754-6834-6-41⟩
Article dans une revue hal-01268121 v1