ELODIE DRULA

Documents

Publications

	Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi Yogesh K Gupta , Francismar C Marcelino-Guimarães , Cécile Lorrain , Andrew Farmer , Sajeet Haridas Nature Communications, 2023, 14 (1), pp.1835. ⟨10.1038/s41467-023-37551-4⟩ Journal articles hal-04143167v1
	A global phylogenomic analysis of the shiitake genus Lentinula Sean Sierra-Patev , Byoungnam Min , Miguel Naranjo-Ortiz , Brian Looney , Zachary Konkel Proceedings of the National Academy of Sciences of the United States of America, 2023, 120 (10), pp.e2214076120. ⟨10.1073/pnas.2214076120⟩ Journal articles hal-04144610v1
	Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria Neha Sahu , Boris Indic , Johanna Wong-Bajracharya , Zsolt Merényi , Huei-Mien Ke Nature Microbiology, 2023, 8 (9), pp.1668-1681. ⟨10.1038/s41564-023-01448-1⟩ Journal articles hal-04382375v1
	Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species Yi-Fei Sun , Annie Lebreton , Jia-Hui Xing , Yu-Xuan Fang , Jing Si Journal of Fungi, 2022, 8 (3), pp.311. ⟨10.3390/jof8030311⟩ Journal articles hal-03627194v1
	The carbohydrate-active enzyme database: functions and literature Elodie Drula , Marie-Line Garron , Suzan Dogan , Vincent Lombard , Bernard Henrissat Nucleic Acids Research, 2022, 50 (D1), pp.D571-D577. ⟨10.1093/nar/gkab1045⟩ Journal articles hal-04602597v1
	Functional exploration of the glycoside hydrolase family GH113 Marie Couturier , Mélanie Touvrey-Loiodice , Nicolas Terrapon , Elodie Drula , Laurine Buon PLoS ONE, 2022, 17 (4), pp.1-14. ⟨10.1371/journal.pone.0267509⟩ Journal articles hal-03656671v1
	Exploring the impact of Verticillium wilt disease on the mechanical properties of elementary flax (Linum usitatissimum L.) fibres Lucile Nuez , Sylvie Durand , Alessia Melelli , Jean-Guy Berrin , Mireille Haon Industrial Crops and Products, 2022, 182, pp.114900. ⟨10.1016/j.indcrop.2022.114900⟩ Journal articles hal-03656635v1
	Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales Gang Wu , Shingo Miyauchi , Emmanuelle Morin , Alan Kuo , Elodie Drula New Phytologist, 2022, 10 (4), ⟨10.1111/nph.17858⟩ Journal articles hal-03473169v1
	The carbohydrate-active enzyme database: functions and literature Elodie Drula , Marie-Line Garron , Suzan Dogan , Vincent Lombard , Bernard Henrissat Nucleic Acids Research, 2022, 50 (D1), pp.D571-D577. ⟨10.1093/nar/gkab1045⟩ Journal articles hal-03588994v1
	Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi Brian Looney , Shingo Miyauchi , Emmanuelle Morin , Elodie Drula , Pierre Emmanuel Courty New Phytologist, 2022, 233 (5), pp.2294-2309. ⟨10.1111/nph.17892⟩ Journal articles hal-04033326v1
	Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap ( Lactarius ) mushrooms Annie Lebreton , Nianwu Tang , Alan Kuo , Kurt Labutti , William Andreopoulos New Phytologist, 2022, 235 (1), pp.306-319. ⟨10.1111/nph.18143⟩ Journal articles hal-03946660v1
	Assembly and synthesis of the extracellular matrix in brown algae Lisa Mazéas , Rina Yonamine , Tristan Barbeyron , Bernard Henrissat , Elodie Drula Seminars in Cell and Developmental Biology, In press, 134, pp.112-124. ⟨10.1016/j.semcdb.2022.03.005⟩ Journal articles hal-03627114v1
	Fungal treatment for the valorization of technical soda lignin Mariane Daou , Clementina Farfan Soto , Amel Majira , Laurent Cézard , Betty Cottyn Journal of Fungi, 2021, 7 (1), pp.39. ⟨10.3390/jof7010039⟩ Journal articles hal-03120945v1
	Genetic determinants of endophytism in the Arabidopsis root mycobiome Fantin Mesny , Shingo Miyauchi , Thorsten Thiergart , Brigitte Pickel , Lea Atanasova Nature Communications, 2021, 12 (1), pp.7227. ⟨10.1038/s41467-021-27479-y⟩ Journal articles hal-03508738v1
	A Putative Lignin Copper Oxidase from Trichoderma reesei Mariane Daou , Alexandra Bisotto , Mireille Haon , Lydie Oliveira Correia , Betty Cottyn Journal of Fungi, 2021, 7 (8), pp.643. ⟨10.3390/jof7080643⟩ Journal articles hal-03328494v1
	Niche differentiation and evolution of the wood decay machinery in the invasive fungus Serpula lacrymans Jaqueline Hess , Sudhagar Balasundaram , Renee Bakkemo , Elodie Drula , Bernard Henrissat The International Society of Microbiologial Ecology Journal, 2021, 15 (2), pp.592-604. ⟨10.1038/s41396-020-00799-5⟩ Journal articles hal-03167198v1
	Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay Hayat Hage , Shingo Miyauchi , Máté Virágh , Elodie Drula , Byoungnam Min Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15423⟩ Journal articles hal-03226505v1
	Identification of Copper-Containing Oxidoreductases in the Secretomes of Three Colletotrichum Species with a Focus on Copper Radical Oxidases for the Biocatalytic Production of Fatty Aldehydes David Ribeaucourt , Safwan Saker , David Navarro , Bastien Bissaro , Elodie Drula Applied and Environmental Microbiology, 2021, 87 (24), pp.e01526-21. ⟨10.1128/AEM.01526-21⟩ Journal articles hal-03619439v1
	Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes Mario Franco , Jennifer Wisecaver , a Elizabeth Arnold , Yu-Ming Ju , Jason Slot New Phytologist, 2021, ⟨10.1111/nph.17873⟩ Journal articles hal-03508718v1
	Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates Jennifer Brown , Candice Swift , Stephen Mondo , Susanna Seppala , Asaf Salamov Biotechnology for Biofuels, 2021, 14 (1), pp.234. ⟨10.1186/s13068-021-02083-w⟩ Journal articles hal-03508676v1
	Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions Wissal Ben Ali , David Navarro , Abhishek Kumar , Elodie Drula , Annick Turbé-Doan Marine drugs, 2020, 18 (9), pp.1-21. ⟨10.3390/md18090461⟩ Journal articles hal-02953538v1
	Genomic analysis enlightens agaricales Lifestyle Evolution and increasing peroxidase diversity Francisco Ruiz-Dueñas , José Barrasa , Marisol Sánchez-García , Susana Camarero , Shingo Miyauchi Molecular Biology and Evolution, 2020, 38 (4), p. 1428-1446. ⟨10.1093/molbev/msaa301⟩ Journal articles hal-03099933v1
	Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits Shingo Miyauchi , Enikő Kiss , Alan Kuo , Elodie Drula , Annegret Kohler Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-18795-w⟩ Journal articles hal-03082507v1
	Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina Emmanuelle Morin , Shingo Miyauchi , Hélène San Clemente , Eric C. H. Chen , Adrian Pelin New Phytologist, 2019, 222 (3), pp.1584-1598. ⟨10.1111/nph.15687⟩ Journal articles hal-02181069v1
	The carbohydrate-active enzymes database (CAZy) in 2013 Bernard Henrissat , Vincent Lombard , Elodie Drula , Pedro Coutinho , Hemalatha Golaconda Ramulu Nucleic Acids Research, 2014, 42 (D1), pp.D490-D495. ⟨10.1093/nar/gkt1178⟩ Journal articles inserm-04405153v1
	The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown Anthony Levasseur , Anne Lomascolo , Olivier Chabrol , Francisco J Ruiz-Dueñas , Eva Boukhris-Uzan BMC Genomics, 2014, 15 (1), pp.486. ⟨10.1186/1471-2164-15-486⟩ Journal articles hal-01204353v1
	Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes Anthony Levasseur , Elodie Drula , Vincent Lombard , Pedro M Coutinho , Bernard Henrissat Biotechnology for Biofuels, 2013, 6 (41), pp.1-14. ⟨10.1186/1754-6834-6-41⟩ Journal articles hal-01268121v1

	Comparative genomics of Rhizophagus irregularis , R. cerebriforme , R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina Emmanuelle Morin , Hélène San Clemente , Shingo Miyauchi , Eric C H Chen , Alan Kuo JOBIM, Jul 2019, Nantes, France Conference poster hal-03324335v1

	The CAZy Database/the Carbohydrate-Active Enzyme (CAZy) Database: Principles and Usage Guidelines Nicolas Terrapon , Vincent Lombard , Elodie Drula , Pedro Coutinho , Bernard Henrissat A Practical Guide to Using Glycomics Databases, Springer Japan, pp.117-131, 2017, ⟨10.1007/978-4-431-56454-6_6⟩ Book sections hal-03508817v1

	Methionine oxidation of Carbohydrate-Active enZymes during white-rot wood decay Lise Molinelli , Elodie Drula , Jean-Charles Gaillard , David Navarro , Jean Armengaud 2023 Preprints, Working Papers, ... hal-04266319v1

ELODIE DRULA

Publications

Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi

A global phylogenomic analysis of the shiitake genus Lentinula

Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria

Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species

The carbohydrate-active enzyme database: functions and literature

Functional exploration of the glycoside hydrolase family GH113

Exploring the impact of Verticillium wilt disease on the mechanical properties of elementary flax (Linum usitatissimum L.) fibres

Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales

The carbohydrate-active enzyme database: functions and literature

Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom‐forming fungi

Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk‐cap ( Lactarius ) mushrooms

Assembly and synthesis of the extracellular matrix in brown algae

Fungal treatment for the valorization of technical soda lignin

Genetic determinants of endophytism in the Arabidopsis root mycobiome

A Putative Lignin Copper Oxidase from Trichoderma reesei

Niche differentiation and evolution of the wood decay machinery in the invasive fungus Serpula lacrymans

Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay

Identification of Copper-Containing Oxidoreductases in the Secretomes of Three Colletotrichum Species with a Focus on Copper Radical Oxidases for the Biocatalytic Production of Fatty Aldehydes

Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes

Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates

Characterization of the CAZy Repertoire from the Marine-Derived Fungus Stemphylium lucomagnoense in Relation to Saline Conditions

Genomic analysis enlightens agaricales Lifestyle Evolution and increasing peroxidase diversity

Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits

Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

The carbohydrate-active enzymes database (CAZy) in 2013

The genome of the white-rot fungus [i]Pycnoporus cinnabarinus[/i]: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown

Expansion of the enzymatic repertoire of the CAZy database to integrate auxiliary redox enzymes

Comparative genomics of Rhizophagus irregularis , R. cerebriforme , R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina

The CAZy Database/the Carbohydrate-Active Enzyme (CAZy) Database: Principles and Usage Guidelines

Methionine oxidation of Carbohydrate-Active enZymes during white-rot wood decay