Emmanuel Caruyer

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Optimization of Acquisition Schemes Towards a Better Estimation of Microstructure Parameters in Multidimensional Diffusion MRI

Constance Bocquillon , Isabelle Corouge , Emmanuel Caruyer

IPMI 2025 - Information Processing in Medical Imaging, May 2025, Kos Island, Greece. pp.142-153, ⟨10.1007/978-3-031-96628-6_10⟩

Communication dans un congrès hal-05369014v1
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Improved Riemannian FOD averaging for fiber bundle priors incorporation in FOD-based tractography algorithms

Grégoire Ville , Emmanuel Caruyer , Julie Coloigner

IST 2025 - International Society for Tractography, Oct 2025, Bordeaux, France. pp.1-1

Communication dans un congrès hal-05425887v1
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Optimisation de schémas d'acquisition pour une meilleure estimation des paramètres de microstructure en IRM de diffusion

Constance Bocquillon , Isabelle Corouge , Emmanuel Caruyer

SFRMBM 2025 - 7ème Congrès de la Société Française de Résonance Magnétique en Biologie et Médecine, Mar 2025, Saint-Malo, France. pp.1

Communication dans un congrès hal-05368961v1
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Orientation dispersion estimated from multidimensional diffusion MRI: does it match simulated realistic microstructure?

Constance Bocquillon , Juan Luis Villarreal Haro , Jonathan Rafael Patino Lopez , Jean-Philippe Thiran , Isabelle Corouge et al.

ESMRMB 2024 - 40th Annual Meeting cientific European Society for Magnetic Resonance in Medecine and Biology, Oct 2024, Barcelone, Spain. pp.1-5

Communication dans un congrès hal-04795839v1
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Atlases and generic priors for multi-compartment mapping with diffusion MRI

Marie Poirier , Aymeric Stamm , Emmanuel Caruyer

ESMRMB 2024 - 40th Annual Meeting cientific European Society for Magnetic Resonance in Medecine and Biology, ESMRMB, Oct 2024, Barcelona, Spain

Communication dans un congrès hal-04843311v1
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A piecewise-polynomial basis for generalized diffusion encoding gradient waveforms

Emmanuel Caruyer

ISMRM & ISMRT Annual Meeting & Exhibition, The International Society for Magnetic Resonance in Medicine (ISMRM), Jun 2023, Toronto ( CA ), Canada

Communication dans un congrès inserm-04313189v1
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Reproducibility and evolution of diffusion MRI measurements within the cervical spinal cord in multiple sclerosis

Haykel Snoussi , Benoit Combès , Olivier Commowick , Elise Bannier , Anne Kerbrat et al.

ISBI 2022 - IEEE International Symposium on Biomedical Imaging, Mar 2022, Kolkata, India. pp.1-5

Communication dans un congrès inserm-03639907v1
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Chaînes de traitement de données d'une tâche motrice en NIRS et comparaison avec l'IRM sur des sujets sains

Nolwenn Jégou , Elise Bannier , Emmanuel Caruyer , Isabelle Corouge

Workshop "Acquisition multimodale et analyse des données", Dec 2022, Rennes, France. pp.28

Communication dans un congrès hal-04308694v1
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SANDI-AMICO: an open-source toolbox for fast Soma And Neurite Density Imaging (SANDI) with AMICO

Simona Schiavi , Mario Ocampo-Pineda , Raphaël Truffet , Emmanuel Caruyer , Alessandro Daducci et al.

27th annual meeting of the Organization for Human Brain Mapping (OHBM), Jun 2021, Virtual, Singapore

Communication dans un congrès inserm-03783770v1
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The Microstructural Features of the Diffusion-Simulated Connectivity (DiSCo) Dataset

Jonathan Rafael-Patino , Gabriel Girard , Raphaël Truffet , Marco Pizzolato , Jean-Philippe Thiran et al.

CDMRI 2021 - International Workshop on Computational Diffusion MRI, Oct 2021, Strasbourg, France. pp.159-170, ⟨10.1007/978-3-030-87615-9_14⟩

Communication dans un congrès inserm-03366318v1
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An evolutionary framework for microstructure-sensitive generalized diffusion gradient waveforms

Raphaël Truffet , Jonathan Rafael-Patino , Gabriel Girard , Marco Pizzolato , Christian Barillot et al.

MICCAI 2020 - 23rd International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2020, Lima, Peru. pp.1-11

Communication dans un congrès inserm-02910086v1
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Optimal selection of diffusion-weighting gradient waveforms using compressed sensing and dictionary learning

Raphaël Truffet , Christian Barillot , Emmanuel Caruyer

ISMRM 2019 - 27th Annual Meeting & Exhibition, May 2019, Montréal, Canada. pp.1-3

Communication dans un congrès inserm-02015394v2
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Multi-Dimensional Diffusion MRI Sampling Scheme: B-tensor Design and Accurate Signal Reconstruction

Alice Bates , Alessandro Daducci , Emmanuel Caruyer

ISMRM 2019 - 27th Annual Meeting & Exhibition, May 2019, Montréal, Canada. pp.1-4

Communication dans un congrès inserm-02065830v1
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Geometric evaluation of distortion correction methods in diffusion MRI of the spinal cord

Haykel Snoussi , Emmanuel Caruyer , Julien Cohen-Adad , Olivier Commowick , Benoit Combes et al.

ISBI 2019 - 16th IEEE International Symposium on Biomedical Imaging, Apr 2019, Venice, Italy. pp.1696-1699, ⟨10.1109/ISBI.2019.8759196⟩

Communication dans un congrès inserm-01986723v1
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Characterizing Peritumoral Tissue Using Free Water Elimination in Clinical DTI

Abdol Aziz Ould Ismail , Drew Parker , Moises Hernandez-Fernandez , Steven Brem , Simon Alexander et al.

MICCAI 2018 - 21st International Conference on Medical Image Computing and Computer Assisted Intervention ; Workshop : Brain Lesion, Sep 2018, Granada, Spain. pp.1-9

Communication dans un congrès inserm-01867347v1
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L2 Similarity Metrics for Diffusion Multi-Compartment Model Images Registration

Olivier Commowick , Renaud Hédouin , Emmanuel Caruyer , Christian Barillot

20th International Conference on Medical Image Computing and Computer Assisted Intervention - MICCAI, Sep 2017, Québec, Canada. pp.257-265, ⟨10.1007/978-3-319-66182-7_30⟩

Communication dans un congrès inserm-01556476v1
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Comparison of inhomogeneity distortion correction methods in diffusion MRI of the spinal cord

Haykel Snoussi , Emmanuel Caruyer , Olivier Commowick , Elise Bannier , Anne Kerbrat et al.

ESMRMB - 34th Annual Scientific Meeting European Society for Magnetic Resonance in Medecine and Biology, Oct 2017, Barcelone, Spain

Communication dans un congrès inserm-01579134v2
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Rotation-invariant measures for population study in HARDI

Emmanuel Caruyer , Ragini Verma

ISMRM, May 2014, Milan, Italy

Communication dans un congrès hal-00944646v1
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Phantomas: a flexible software library to simulate diffusion MR phantoms

Emmanuel Caruyer , Alessandro Daducci , Maxime Descoteaux , Jean-Christophe Houde , Jean-Philippe Thiran et al.

ISMRM, May 2014, Milan, Italy

Communication dans un congrès hal-00944644v1
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Addressing the Challenge of Edema in Fiber Tracking

Jérémy Lecoeur , Emmanuel Caruyer , Mark Elliott , Steven Brem , Luke Macyszyn et al.

MICCAI 2014 DTI Tractography Challenge, Sep 2014, Boston, United States

Communication dans un congrès hal-01072222v1
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A comparative study of 16 tractography algorithms for the corticospinal tract: reproducibility and subject-specificity

Emmanuel Caruyer , Luke Bloy , Birkan Tunç , Jérémy Lecoeur , Varsha Shankar et al.

ISMRM, May 2014, Milan, Italy

Communication dans un congrès hal-00944649v1
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How should tractography go forward? A Tractometer evaluation of local reconstruction and tracking

Jean-Christophe Houde , Emmanuel Caruyer , Alessandro Daducci , Maxime Descoteaux

ISMRM, May 2014, Milan, Italy. pp.6470

Communication dans un congrès hal-01033816v1
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Improving White Matter Tractography by Resolving the Challenges of Edema

Jérémy Lecoeur , Emmanuel Caruyer , Luke Macyszyn , Ragini Verma

MICCAI 2013 DTI Tractography Challenge, Sep 2013, Nagoya, Japan

Communication dans un congrès hal-00850496v1
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Optimal Regularization for MR Diffusion Signal Reconstruction

Emmanuel Caruyer , Rachid Deriche

ISBI - 9th IEEE International Symposium on Biomedical Imaging, May 2012, Barcelona, Spain

Communication dans un congrès hal-00660635v1
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Parametric Dictionary Learning in Diffusion MRI

Sylvain Merlet , Emmanuel Caruyer , Aurobrata Ghosh , Rachid Deriche

HARDI reconstruction workshop - ISBI - International Symposium on Biomedical Imaging, Alessandro Daducci and Jean-Philippe Thiran and Yves Wiaux, May 2012, Barcelona, Spain

Communication dans un congrès hal-00697102v1
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Parametric dictionary learning for modeling EAP and ODF in diffusion MRI

Sylvain Merlet , Emmanuel Caruyer , Rachid Deriche

Medical Image Computing and Computer Assisted Intervention (MICCAI), Oct 2012, Nice, France. 8 p

Communication dans un congrès hal-00728067v1
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A Computational Framework for Experimental Design in Diffusion MRI

Emmanuel Caruyer , Rachid Deriche

CDMRI - MICCAI Workshop on Computational Diffusion MRI, Oct 2012, Nice, France

Communication dans un congrès hal-00747700v1
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Incremental gradient table for multiple Q-shells diffusion MRI

Emmanuel Caruyer , Christophe Lenglet , Guillermo Sapiro , Rachid Deriche

HBM 17th Annual Meeting, Jun 2011, Québec, Canada

Communication dans un congrès inria-00617957v1
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Online Motion Detection in High Angular Resolution Diffusion Imaging

Emmanuel Caruyer , Iman Aganj , Christophe Lenglet , Guillermo Sapiro , Rachid Deriche

International Symposium on Biomedical Imaging: From Nano to Macro, Mar 2011, Chicago, United States

Communication dans un congrès inria-00559904v2
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Compressive Sensing Ensemble Average Propagator Estimation via L1 Spherical Polar Fourier Imaging

Jian Cheng , Sylvain Merlet , Emmanuel Caruyer , Aurobrata Ghosh , Tianzi Jiang et al.

MICCAI Workshop on Computational Diffusion MRI - CDMRI'11, Sep 2011, Toronto, Canada

Communication dans un congrès inria-00615434v1
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Compressive Sensing Ensemble Average Propagator Estimation via L1 Spherical Polar Fourier Imaging

Jian Cheng , Sylvain Merlet , Aurobrata Ghosh , Emmanuel Caruyer , Tianzi Jiang et al.

ISMRM, May 2011, Montréal, Canada

Communication dans un congrès inria-00615437v1
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Optimal Design of Multiple Q-shells experiments for Diffusion MRI

Emmanuel Caruyer , Jian Cheng , Christophe Lenglet , Guillermo Sapiro , Tianzi Jiang et al.

MICCAI Workshop on Computational Diffusion MRI - CDMRI'11, Sep 2011, Toronto, Canada

Communication dans un congrès inria-00617663v1
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On Line Reconstruction and Motion Detection in HARDI

Emmanuel Caruyer , Iman Aganj , Christophe Lenglet , Guillermo Sapiro , Rachid Deriche

19th ISMRM annual meeting, May 2011, Montréal, Canada

Communication dans un congrès inria-00560899v1
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Impact of radial and angular sampling on multiple shells acquisition in diffusion MRI

Sylvain Merlet , Emmanuel Caruyer , Rachid Deriche

MICCAI 2011, Sep 2011, Toronto, Canada. pp.113-121

Communication dans un congrès hal-00614387v1
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Online orientation distribution function reconstruction in constant solid angle and its application to motion detection in HARDI

Emmanuel Caruyer , Iman Aganj , Ryan Muetzel , Christophe Lenglet , Guillermo Sapiro et al.

International Symposium on Biomedical Imaging: From Nano to Macro, Apr 2010, Rotterdam, Netherlands

Communication dans un congrès inria-00559884v1
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Adaptive Design of Sampling Directions in Diffusion Tensor MRI and Validation on Human Brain Images

Emmanuel Caruyer , Rachid Deriche

MICCAI Workshop on Diffusion Modelling and the Fiber Cup, Sep 2009, Londres, United Kingdom

Communication dans un congrès inria-00560054v1
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Optimization of acquisition schemes towards a better estimation of microstructure parameters in diffusion MRI

Constance Bocquillon , Isabelle Corouge , Emmanuel Caruyer

ISMRM 2025 - Workshop on 40 years of diffusion: Past, Present & Future Perspectives, Feb 2025, Kyoto (Japan), Japan. 2025

Poster de conférence hal-05368999v1
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Reproductibilité d'une tâche motrice en NIRS et comparaison à l'IRMf BOLD sur des sujets adultes sains

Nolwenn Jégou , Elise Bannier , Nora Erhart , Hector H Garcia , Emmanuel Caruyer et al.

SFRMBM 2023 - 6ème Congrès Scientifique de la Société Française de Résonance Magnétique en Biologie et Médecine, Mar 2023, Paris, France. pp.1-1

Poster de conférence hal-04032802v1
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Étude de l’effet du bruit sur l'estimation de l'anisotropie microscopique en IRM de diffusion

Constance Bocquillon , Marc Lapert , Elise Bannier , Isabelle Corouge , Emmanuel Caruyer

SFRMBM 2023 - Sixième congrès de la Société Française de Résonance Magnétique en Biologie et Médecine, Mar 2023, Paris, France

Poster de conférence hal-04072656v1
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Reproducibility of motor task-based fNIRS and comparison with functional MRI in healthy adults

Nolwenn Jégou , Elise Bannier , Nora Erhart , Hector H Garcia , Emmanuel Caruyer et al.

Biennial meeting of the Society for functional Near-Infrared Spectroscopy (fNIRS 2022), Oct 2022, Boston, MA, United States.

Poster de conférence hal-03783898v1
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Optimal selection of diffusion-weighting gradient waveforms using compressed sensing and dictionary learning

Raphaël Truffet , Emmanuel Caruyer

AI days 2018, Apr 2018, Rennes, France. pp.1

Poster de conférence inserm-01939066v2
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A Riemannian framework for incorporating white matter bundle priors in ODF-based tractography algorithms.

Thomas Durantel , Gabriel Girard , Emmanuel Caruyer , Olivier Commowick , Julie Coloigner

PLoS ONE, In press, pp.1-10

Article dans une revue hal-04246380v1
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Alpha Mesh Swc: automatic and robust surface mesh generation from the skeleton description of brain cells

Alex Mcsweeney-Davis , Chengran Fang , Emmanuel Caruyer , Anne Kerbrat , Jing-Rebecca Li

Briefings in Bioinformatics, 2025, 26 (3), ⟨10.1093/bib/bbaf258⟩

Article dans une revue hal-04913819v1
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fNIRS reproducibility varies with data quality, analysis pipelines, and researcher experience

Meryem Yücel , Robert Luke , Rickson Mesquita , Alexander von Lühmann , David Mehler et al.

Communications Biology, 2025, 8 (1), pp.1149. ⟨10.1038/s42003-025-08412-1⟩

Article dans une revue hal-05441750v1
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Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge

Gabriel Girard , Jonathan Rafael-Patiño , Raphaël Truffet , Dogu Baran Aydogan , Nagesh Adluru et al.

NeuroImage, 2023, 277, pp.1-11. ⟨10.1016/j.neuroimage.2023.120231⟩

Article dans une revue hal-04390592v1
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Effectiveness of regional diffusion MRI measures in distinguishing multiple sclerosis abnormalities within the cervical spinal cord

Haykel Snoussi , Julien Cohen-Adad , Benoît Combès , Élise Bannier , Slimane Tounekti et al.

Brain and Behavior, 2023, 13 (11), pp.e3159. ⟨10.1002/brb3.3159⟩

Article dans une revue inserm-04313206v1
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Consensus-based guidance for conducting and reporting multi-analyst studies

Balazs Aczel , Barnabas Szaszi , Gustav Nilsonne , Olmo van den Akker , Casper Albers et al.

eLife, 2021, 10, pp.e72185. ⟨10.7554/eLife.72185⟩

Article dans une revue inserm-03431812v1
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The diffusion-simulated connectivity (DiSCo) dataset

Jonathan Rafael-Patino , Gabriel Girard , Raphaël Truffet , Marco Pizzolato , Emmanuel Caruyer et al.

Data in Brief, 2021, 38, pp.1-7. ⟨10.1016/j.dib.2021.107429⟩

Article dans une revue inserm-03366969v1
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A 4D Basis and Sampling Scheme for the Tensor Encoded Multi-Dimensional Diffusion MRI Signal

Alice Bates , Alessandro Daducci , Parastoo Sadeghi , Emmanuel Caruyer

IEEE Signal Processing Letters, 2020, 27, pp.790-794. ⟨10.1109/LSP.2020.2991832⟩

Article dans une revue inserm-02881980v1
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Freewater estimatoR using iNtErpolated iniTialization (FERNET): Characterizing peritumoral edema using clinically feasible diffusion MRI data

Drew Parker , Abdol Aziz Ould Ismail , Ronald Wolf , Steven Brem , Simon Alexander et al.

PLoS ONE, 2020, 15 (5), pp.e0233645. ⟨10.1371/journal.pone.0233645⟩

Article dans une revue inserm-02884608v1
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The challenge of mapping the human connectome based on diffusion tractography

Klaus H Maier-Hein , Peter F. Neher , Christophe Houde , Marc-Alexandre Côté , Eleftherios Garyfallidis et al.

Nature Communications, 2017, 8 (1), ⟨10.1038/s41467-017-01285-x⟩

Article dans une revue hal-01631578v1
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Diffantom: Whole-Brain Diffusion MRI Phantoms Derived from Real Datasets of the Human Connectome Project

Oscar Esteban , Emmanuel Caruyer , Alessandro Daducci , Meritxell Bach-Cuadra , María Ledesma-Carbayo et al.

Frontiers in Neuroinformatics, 2016, 10, pp.4. ⟨10.3389/fninf.2016.00004⟩

Article dans une revue inserm-03219764v1
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MAPL: Tissue Microstructure Estimation Using Laplacian-Regularized MAP-MRI and its Application to HCP Data

Rutger H.J. Fick , Demian Wassermann , Emmanuel Caruyer , Rachid Deriche

NeuroImage, 2016, 134, pp.365-385. ⟨10.1016/j.neuroimage.2016.03.046⟩

Article dans une revue hal-01291929v1
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On facilitating the use of HARDI in population studies by creating rotation-invariant markers

Emmanuel Caruyer , Ragini Verma

Medical Image Analysis, 2015, 20 (1), pp.87-96. ⟨10.1016/j.media.2014.10.009⟩

Article dans une revue hal-01090154v1
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lop-DWI: A Novel Scheme for Pre-Processing of Diffusion Weighted Images in the Gradient Direction Domain

Farshid Sepehrband , Jeiran Choupan , Emmanuel Caruyer , Nyoman D. Kurniawan , Yaniv Gal et al.

Frontiers in Neurology, 2015, 5 (290), ⟨10.3389/fneur.2014.00290⟩

Article dans une revue hal-01103577v1

Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI

Alessandro Daducci , Erick Canales Rodgriguez , Maxime Descoteaux , Eleftherios Garyfallidis , Yaniv Gur et al.

IEEE Transactions on Medical Imaging, 2014, 99, pp.384-399. ⟨10.1109/TMI.2013.2285500⟩

Article dans une revue hal-00908289v1
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A computational diffusion MRI and parametric dictionary learning framework for modeling the diffusion signal and its features

Sylvain L. Merlet , Emmanuel Caruyer , Aurobrata Ghosh , Rachid Deriche

Medical Image Analysis, 2013, pp.MEDIMA779. ⟨10.1016/j.media.2013.04.011⟩

Article dans une revue hal-00820817v1

Motion Detection in Diffusion MRI via Online ODF Estimation

Emmanuel Caruyer , Iman Aganj , Christophe Lenglet , Guillermo Sapiro , Rachid Deriche

International Journal of Biomedical Imaging, 2013, 2013 (Article ID 84936), pp.1-8. ⟨10.1155/2013/849363⟩

Article dans une revue hal-00798582v1
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Design of multishell sampling schemes with uniform coverage in diffusion MRI

Emmanuel Caruyer , Christophe Lenglet , Guillermo Sapiro , Rachid Deriche

Magnetic Resonance in Medicine, 2013, 69 (6), pp.1534-1540. ⟨10.1002/mrm.24736⟩

Article dans une revue hal-00821688v1
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Diffusion MRI Signal Reconstruction with Continuity Constraint and Optimal Regularization

Emmanuel Caruyer , Rachid Deriche

Medical Image Analysis, 2012, 16 (6), pp.1113-1120. ⟨10.1016/j.media.2012.06.011⟩

Article dans une revue hal-00711883v1
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IRM de diffusion du Q-space : Acquisition et pré-traitements

Emmanuel Caruyer

Medical Imaging. Université Nice Sophia Antipolis, 2012. English. ⟨NNT : ⟩

Thèse tel-00750144v1