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Iron fortification modifies the microbial community structure and metabolome of a model surface-ripened cheese
Mahtab Shoukat
,
Vincent Hervé
,
Anne-Sophie Sarthou
,
Anne-Claire Peron
,
Alice Danel
et al.
Article dans une revue
hal-04878181
v1
|
|
Exploring viral diversity in fermented vegetables through viral metagenomics
Julia Cantuti Gendre
,
Claire Le Marrec
,
Stéphane Chaillou
,
Lysiane Omhover-Fougy
,
Sophie Landaud
et al.
Article dans une revue
hal-04915669
v1
|
|
Iron-based microbial interactions: the role of iron metabolism in the cheese ecosystem
Rina Mekuli
,
Mahtab Shoukat
,
Eric Dugat-Bony
,
Pascal Bonnarme
,
Sophie Landaud
et al.
Article dans une revue
hal-05036938
v1
|
|
Dynamics of the viral community on the surface of a French smear-ripened cheese during maturation and persistence across production years
Thomas Paillet
,
Quentin Lamy-Besnier
,
Clarisse Figueroa
,
Marie-Agnès Petit
,
Eric Dugat-Bony
Article dans une revue
hal-04616642
v1
|
|
A comprehensive, large-scale analysis of “terroir” cheese and milk microbiota reveals profiles strongly shaped by both geographical and human factors
Francoise Irlinger
,
Mahendra Mariadassou
,
Eric Dugat-Bony
,
Olivier Rué
,
Cécile Neuvéglise
et al.
Article dans une revue
hal-04668230
v1
|
|
Comparison of metabarcoding taxonomic markers to describe fungal communities in fermented foods
Olivier Rué
,
Monika Coton
,
Eric Dugat-Bony
,
Kate Howell
,
Françoise Irlinger
et al.
Article dans une revue
hal-04234976
v1
|
|
Genetic and technological diversity of Streptococcus thermophilus isolated from the Saint-Nectaire PDO cheese-producing area.
Anna Grizon
,
Sébastien Theil
,
Cécile Callon
,
Pauline Gerber
,
Sandra Helinck
et al.
Article dans une revue
hal-04271384
v1
|
|
Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory
Thomas Paillet
,
Julien Lossouarn
,
Clarisse Figueroa
,
Cédric Midoux
,
Olivier Rué
et al.
Article dans une revue
hal-03738602
v1
|
|
Analysis of Microbiota Persistence in Quebec’s Terroir Cheese Using a Metabarcoding Approach
Annick Raymond-Fleury
,
Marie-Hélène Lessard
,
Julien Chamberland
,
Yves Pouliot
,
Eric Dugat-Bony
et al.
Article dans une revue
hal-03721977
v1
|
|
Protein Sources Alternative to Meat: State of the Art and Involvement of Fermentation
Mariagrazia Molfetta
,
Etiele Morais
,
Luisa Barreira
,
Giovanni Luigi Bruno
,
Francesco Porcelli
et al.
Article dans une revue
hal-03721991
v1
|
|
The microbial community associated with pea seeds (Pisum sativum) of different geographical origins
Valentine Chartrel
,
Eric Dugat-Bony
,
Anne-Sophie Sarthou
,
Sophie Huchette
,
Pascal Bonnarme
et al.
Article dans une revue
hal-03359046
v1
|
|
Bacteriophage ecology of fermented foods: anything new under the sun?
Thomas Paillet
,
Eric Dugat-Bony
Article dans une revue
hal-03298690
v1
|
|
Phenotypic and Genetic Characterization of the Cheese Ripening Yeast Geotrichum candidum
Vincent Perkins
,
Stéphanie Vignola
,
Marie-Helene Lessard
,
Pier-Luc Plante
,
Jacques Corbeil
et al.
Article dans une revue
hal-02873333
v1
|
|
Analysis of bacterial and archaeal communities associated with Fogo volcanic soils of different ages
Corinne Biderre-Petit
,
Corentin Hochart
,
Hélène Gardon
,
Eric Dugat-Bony
,
Sébastien Terrat
et al.
Article dans une revue
hal-02996360
v1
|
|
Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles
Eric Dugat-Bony
,
Julien Lossouarn
,
Marianne de Paepe
,
Anne-Sophie Sarthou
,
Yasmina Fedala
et al.
Article dans une revue
hal-02623156
v1
|
|
Influence of feed temperature to biofouling of ultrafiltration membrane during skim milk processing
Julien Chamberland
,
Thomas Messier
,
Eric Dugat-Bony
,
Marie-Helene Lessard
,
Steve Labrie
et al.
Article dans une revue
hal-02629063
v1
|
|
Effect of sodium chloride reduction or partial substitution with potassium chloride on the microbiological, biochemical and sensory characteristics of semi-hard and soft cheeses
Eric Dugat-Bony
,
Pascal Bonnarme
,
Sébastien Fraud
,
Jessie Catellote
,
Anne-Sophie Sarthou
et al.
Article dans une revue
hal-02349939
v1
|
|
Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding
Hélène Falentin
,
Lucas Auer
,
Mahendra Mariadassou
,
Géraldine Pascal
,
Olivier Rué
et al.
Cahier des Techniques de l'INRA, 2019, 97, pp.46-69
Article dans une revue
(article de synthèse)
hal-02311421
v1
|
|
Design of microbial consortia for the fermentation of pea-protein-enriched emulsions
Salma Ben-Harb
,
Anne Saint-Eve
,
Maud Panouillé
,
Isabelle Souchon
,
Pascal Bonnarme
et al.
Article dans une revue
(article de synthèse)
hal-04413334
v1
|
|
Effect of dairy matrices on the survival of Streptococcus thermophilus, Brevibacterium aurantiacum and Hafnia alvei during digestion
Leticia Hernandez Galan
,
Thomas Cattenoz
,
Steven Le Feunteun
,
Alexis Canette
,
Romain Briandet
et al.
Article dans une revue
hal-01607632
v1
|
|
Changes in bacterial community composition of Escherichia coli O157:H7 super-shedder cattle occur in the lower intestine
Rahat Zaheer
,
Eric Dugat-Bony
,
Devon Holman
,
Elodie Cousteix
,
Yong Xu
et al.
Article dans une revue
hal-01465156
v1
|
|
Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat
Nguyen Phuong Pham
,
Séverine Layec
,
Eric Dugat-Bony
,
Marie Vidal
,
Francoise Irlinger
et al.
Article dans une revue
hal-02628710
v1
|
|
The effect of reduced sodium chloride content on the microbiological and biochemical properties of a soft surface-ripened cheese
Eric Dugat-Bony
,
Anne-Sophie Sarthou
,
Marie-Claire Perello
,
Gilles de Revel
,
Pascal Bonnarme
et al.
Article dans une revue
hal-01532552
v1
|
|
Highlighting the microbial diversity of 12 French cheese varieties
Eric Dugat-Bony
,
Lucille Garnier
,
Jeremie Denonfoux
,
Stéphanie Ferreira
,
Anne-Sophie Sarthou
et al.
Article dans une revue
hal-01389685
v1
|
|
Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus CFL1, a Lactic Acid Bacterium Isolated from French Handcrafted Fermented Milk
Julie Meneghel
,
Eric Dugat-Bony
,
Françoise Irlinger
,
Valentin Loux
,
Marie Vidal
et al.
Article dans une revue
hal-01511494
v1
|
|
Draft Genome Sequence of Corynebacterium variabile Mu292, Isolated from Munster, a French Smear-Ripened Cheese
Eric Dugat-Bony
,
Anne-Sophie Sarthou
,
Valentin Loux
,
Marie Vidal
,
Pascal Bonnarme
et al.
Article dans une revue
hal-03649175
v1
|
|
Distribution of dehalococcoidia in the anaerobic deep water of a remote meromictic crater lake and detection of dehalococcoidia-derived reductive dehalogenase homologous genes
Corinne Biderre-Petit
,
Eric Dugat-Bony
,
Mickaël Mege
,
Nicolas Parisot
,
Lorenz Adrian
et al.
Article dans une revue
hal-01599389
v2
|
|
Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus CFL1, a Lactic Acid Bacterium Isolated from French Handcrafted Fermented Milk
Julie Meneghel
,
Eric Dugat-Bony
,
Françoise Irlinger
,
Valentin Loux
,
Marie Vidal
et al.
Article dans une revue
hal-03649172
v1
|
|
Draft genome sequence of Corynebacterium variabile Mu292, isolated from Munster, a french smear-ripened cheese
Eric Dugat-Bony
,
Anne-Sophie Sarthou
,
Valentin Loux
,
Marie Vidal
,
Pascal Bonnarme
et al.
Article dans une revue
hal-01480898
v1
|
|
Investigation of the activity of the microorganisms in a reblochon-style cheese by metatranscriptomic analysis
Christophe C. Monnet
,
Eric Dugat-Bony
,
Dominique Swennen
,
Jean-Marie Beckerich
,
Francoise F. Irlinger
et al.
Article dans une revue
hal-02633875
v1
|
|
Overview of a surface-ripened cheese community functioning by meta-omics analyses
Eric Dugat-Bony
,
Cecile Straub
,
Aurélie Teissandier
,
Djamila Onesime
,
Valentin Loux
et al.
Article dans une revue
hal-01195505
v1
|
|
Cheese rind microbial communities: diversity, composition and origin
Francoise Irlinger
,
Séverine Layec
,
Sandra Hélinck
,
Eric Dugat-Bony
Article dans une revue
(article de synthèse)
hal-01535274
v1
|
|
Escherichia coli O157:H7 Super-Shedder and Non-Shedder Feedlot Steers Harbour Distinct Fecal Bacterial Communities
Yong Xu
,
Eric Dugat-Bony
,
Rahat Zaheer
,
Lorna Selinger
,
Ruth Barbieri
et al.
Article dans une revue
hal-01195479
v1
|
|
Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments
Frédéric Plewniak
,
Sandrine Koechler
,
Benjamin Navet
,
Eric Dugat-Bony
,
Olivier Bouchez
et al.
Article dans une revue
istex
hal-01026453
v1
|
|
Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration
Jérémie Denonfoux
,
Nicolas Parisot
,
Eric Dugat-Bony
,
Corinne Petit
,
Delphine Boucher
et al.
Article dans une revue
hal-00783545
v1
|
|
KASpOD a web service for highly specific and explorative oligonucleotide design
Nicolas Parisot
,
Jérémie Denonfoux
,
Eric Dugat-Bony
,
Pierre Peyret
,
Eric Peyretaillade
Article dans une revue
hal-02651992
v1
|
|
Annotation of microsporidian genomes using transcriptional signals.
Eric Peyretaillade
,
Nicolas Parisot
,
Valérie Polonais
,
Sébastien Terrat
,
Jérémie Denonfoux
et al.
Article dans une revue
hal-00813939
v1
|
|
Detecting unknown sequences with DNA microarrays: explorative probe design strategies.
Eric Dugat-Bony
,
Eric Peyretaillade
,
Nicolas Parisot
,
Corinne Biderre-Petit
,
Faouzi Jaziri
et al.
Article dans une revue
istex
hal-00822134
v1
|
|
In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes
Eric Dugat-Bony
,
Corinne Biderre-Petit
,
Faouzi Jaziri
,
Maude M. David
,
Jérémie Denonfoux
et al.
Article dans une revue
hal-00747255
v1
|
|
HiSpOD: probe design for functional DNA microarrays.
Eric Dugat-Bony
,
Mohieddine Missaoui
,
Eric Peyretaillade
,
Corinne Biderre-Petit
,
Ourdia Bouzid
et al.
Article dans une revue
hal-00842882
v1
|
|
Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake.
Corinne Biderre-Petit
,
Didier Jézéquel
,
Eric Dugat-Bony
,
Filipa Lopes
,
Jan Kuever
et al.
Article dans une revue
hal-00842871
v1
|
|
Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria
Sandrine Demanèche
,
Jean-Michel Monier
,
Eric Dugat-Bony
,
Pascal Simonet
Article dans une revue
hal-00630134
v1
|
|
Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development.
Sébastien Terrat
,
Eric Peyretaillade
,
Olivier Gonçalves
,
Eric Dugat-Bony
,
Fabrice Gravelat
et al.
Article dans une revue
hal-00529644
v1
|
|
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Eric Peyretaillade
,
Olivier Gonçalves
,
Sébastien Terrat
,
Eric Dugat-Bony
,
Patrick Wincker
et al.
Article dans une revue
hal-01888038
v1
|
|
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
Eric Peyretaillade
,
Olivier Gonçalves
,
Sébastien Terrat
,
Eric Dugat-Bony
,
Patrick Wincker
et al.
Article dans une revue
hal-00461524
v1
|