Eric Dugat-Bony

Eric Dugat-Bony - INRAE - Researcher
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Publications

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Publications

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Iron fortification modifies the microbial community structure and metabolome of a model surface-ripened cheese

Mahtab Shoukat , Vincent Hervé , Anne-Sophie Sarthou , Anne-Claire Peron , Alice Danel et al.
International Journal of Food Microbiology, 2025, 427, pp.110971. ⟨10.1016/j.ijfoodmicro.2024.110971⟩
Article dans une revue hal-04878181 v1
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Exploring viral diversity in fermented vegetables through viral metagenomics

Julia Cantuti Gendre , Claire Le Marrec , Stéphane Chaillou , Lysiane Omhover-Fougy , Sophie Landaud et al.
Food Microbiology, 2025, 128, pp.104733. ⟨10.1016/j.fm.2025.104733⟩
Article dans une revue hal-04915669 v1
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Iron-based microbial interactions: the role of iron metabolism in the cheese ecosystem

Rina Mekuli , Mahtab Shoukat , Eric Dugat-Bony , Pascal Bonnarme , Sophie Landaud et al.
Journal of Bacteriology, In press, pp.e00539-24. ⟨10.1128/jb.00539-24⟩
Article dans une revue hal-05036938 v1

Dynamics of the viral community on the surface of a French smear-ripened cheese during maturation and persistence across production years

Thomas Paillet , Quentin Lamy-Besnier , Clarisse Figueroa , Marie-Agnès Petit , Eric Dugat-Bony
mSystems, 2024, 9 (7), pp.e0020124. ⟨10.1128/msystems.00201-24⟩
Article dans une revue hal-04616642 v1
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A comprehensive, large-scale analysis of “terroir” cheese and milk microbiota reveals profiles strongly shaped by both geographical and human factors

Francoise Irlinger , Mahendra Mariadassou , Eric Dugat-Bony , Olivier Rué , Cécile Neuvéglise et al.
ISME Communications, 2024, 4 (1), pp.ycae095. ⟨10.1093/ismeco/ycae095⟩
Article dans une revue hal-04668230 v1
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Comparison of metabarcoding taxonomic markers to describe fungal communities in fermented foods

Olivier Rué , Monika Coton , Eric Dugat-Bony , Kate Howell , Françoise Irlinger et al.
Peer Community Journal, 2023, 3, pp.e97. ⟨10.24072/pcjournal.321⟩
Article dans une revue hal-04234976 v1
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Genetic and technological diversity of Streptococcus thermophilus isolated from the Saint-Nectaire PDO cheese-producing area.

Anna Grizon , Sébastien Theil , Cécile Callon , Pauline Gerber , Sandra Helinck et al.
Frontiers in Microbiology, 2023, 14, pp.1245510. ⟨10.3389/fmicb.2023.1245510⟩
Article dans une revue hal-04271384 v1
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Virulent Phages Isolated from a Smear-Ripened Cheese Are Also Detected in Reservoirs of the Cheese Factory

Thomas Paillet , Julien Lossouarn , Clarisse Figueroa , Cédric Midoux , Olivier Rué et al.
Viruses, 2022, 14 (8), pp.1620. ⟨10.3390/v14081620⟩
Article dans une revue hal-03738602 v1
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Analysis of Microbiota Persistence in Quebec’s Terroir Cheese Using a Metabarcoding Approach

Annick Raymond-Fleury , Marie-Hélène Lessard , Julien Chamberland , Yves Pouliot , Eric Dugat-Bony et al.
Microorganisms, 2022, 10 (7), pp.1381. ⟨10.3390/microorganisms10071381⟩
Article dans une revue hal-03721977 v1
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Protein Sources Alternative to Meat: State of the Art and Involvement of Fermentation

Mariagrazia Molfetta , Etiele Morais , Luisa Barreira , Giovanni Luigi Bruno , Francesco Porcelli et al.
Foods, 2022, 11 (14), pp.2065. ⟨10.3390/foods11142065⟩
Article dans une revue hal-03721991 v1

The microbial community associated with pea seeds (Pisum sativum) of different geographical origins

Valentine Chartrel , Eric Dugat-Bony , Anne-Sophie Sarthou , Sophie Huchette , Pascal Bonnarme et al.
Plant and Soil, 2021, 462 (1-2), pp.405-427. ⟨10.1007/s11104-021-04856-6⟩
Article dans une revue hal-03359046 v1
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Bacteriophage ecology of fermented foods: anything new under the sun?

Thomas Paillet , Eric Dugat-Bony
Current Opinion in Food Science, 2021, 40, pp.102-111. ⟨10.1016/j.cofs.2021.03.007⟩
Article dans une revue hal-03298690 v1
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Phenotypic and Genetic Characterization of the Cheese Ripening Yeast Geotrichum candidum

Vincent Perkins , Stéphanie Vignola , Marie-Helene Lessard , Pier-Luc Plante , Jacques Corbeil et al.
Frontiers in Microbiology, 2020, 11, ⟨10.3389/fmicb.2020.00737⟩
Article dans une revue hal-02873333 v1

Analysis of bacterial and archaeal communities associated with Fogo volcanic soils of different ages

Corinne Biderre-Petit , Corentin Hochart , Hélène Gardon , Eric Dugat-Bony , Sébastien Terrat et al.
FEMS Microbiology Ecology, 2020, 96 (7), ⟨10.1093/femsec/fiaa104⟩
Article dans une revue hal-02996360 v1
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Viral metagenomic analysis of the cheese surface: A comparative study of rapid procedures for extracting viral particles

Eric Dugat-Bony , Julien Lossouarn , Marianne de Paepe , Anne-Sophie Sarthou , Yasmina Fedala et al.
Food Microbiology, 2020, 85 (103278), ⟨10.1016/j.fm.2019.103278⟩
Article dans une revue hal-02623156 v1
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Influence of feed temperature to biofouling of ultrafiltration membrane during skim milk processing

Julien Chamberland , Thomas Messier , Eric Dugat-Bony , Marie-Helene Lessard , Steve Labrie et al.
International Dairy Journal, 2019, 93, pp.99-105. ⟨10.1016/j.idairyj.2019.02.005⟩
Article dans une revue hal-02629063 v1
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Effect of sodium chloride reduction or partial substitution with potassium chloride on the microbiological, biochemical and sensory characteristics of semi-hard and soft cheeses

Eric Dugat-Bony , Pascal Bonnarme , Sébastien Fraud , Jessie Catellote , Anne-Sophie Sarthou et al.
Food Research International, 2019, 125, pp.108643. ⟨10.1016/j.foodres.2019.108643⟩
Article dans une revue hal-02349939 v1
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Guide pratique à destination des biologistes, bioinformaticiens et statisticiens qui souhaitent s’initier aux analyses métabarcoding

Hélène Falentin , Lucas Auer , Mahendra Mariadassou , Géraldine Pascal , Olivier Rué et al.
Cahier des Techniques de l'INRA, 2019, 97, pp.46-69
Article dans une revue (article de synthèse) hal-02311421 v1

Design of microbial consortia for the fermentation of pea-protein-enriched emulsions

Salma Ben-Harb , Anne Saint-Eve , Maud Panouillé , Isabelle Souchon , Pascal Bonnarme et al.
International Journal of Food Microbiology, 2019, 293, pp.124-136. ⟨10.1016/j.ijfoodmicro.2019.01.012⟩
Article dans une revue (article de synthèse) hal-04413334 v1
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Effect of dairy matrices on the survival of Streptococcus thermophilus, Brevibacterium aurantiacum and Hafnia alvei during digestion

Leticia Hernandez Galan , Thomas Cattenoz , Steven Le Feunteun , Alexis Canette , Romain Briandet et al.
Food Research International, 2017, 100 (1), pp.477-488. ⟨10.1016/j.foodres.2017.07.044⟩
Article dans une revue hal-01607632 v1
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Changes in bacterial community composition of Escherichia coli O157:H7 super-shedder cattle occur in the lower intestine

Rahat Zaheer , Eric Dugat-Bony , Devon Holman , Elodie Cousteix , Yong Xu et al.
PLoS ONE, 2017, 12 (1), pp.e0170050. ⟨10.1371/journal.pone.0170050⟩
Article dans une revue hal-01465156 v1
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Comparative genomic analysis of Brevibacterium strains: insights into key genetic determinants involved in adaptation to the cheese habitat

Nguyen Phuong Pham , Séverine Layec , Eric Dugat-Bony , Marie Vidal , Francoise Irlinger et al.
BMC Genomics, 2017, 18 (1), pp.955. ⟨10.1186/s12864-017-4322-1⟩
Article dans une revue hal-02628710 v1
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The effect of reduced sodium chloride content on the microbiological and biochemical properties of a soft surface-ripened cheese

Eric Dugat-Bony , Anne-Sophie Sarthou , Marie-Claire Perello , Gilles de Revel , Pascal Bonnarme et al.
Journal of Dairy Science, 2016, 99 (4), pp.2502-2511. ⟨10.3168/jds.2015-10502⟩
Article dans une revue hal-01532552 v1
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Highlighting the microbial diversity of 12 French cheese varieties

Eric Dugat-Bony , Lucille Garnier , Jeremie Denonfoux , Stéphanie Ferreira , Anne-Sophie Sarthou et al.
International Journal of Food Microbiology, 2016, 238, pp.265-273. ⟨10.1016/j.ijfoodmicro.2016.09.026⟩
Article dans une revue hal-01389685 v1
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Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus CFL1, a Lactic Acid Bacterium Isolated from French Handcrafted Fermented Milk

Julie Meneghel , Eric Dugat-Bony , Françoise Irlinger , Valentin Loux , Marie Vidal et al.
Genome Announcements, 2016, 4 (2), pp.e00052-16. ⟨10.1128/genomeA.00052-16⟩
Article dans une revue hal-01511494 v1
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Draft Genome Sequence of Corynebacterium variabile Mu292, Isolated from Munster, a French Smear-Ripened Cheese

Eric Dugat-Bony , Anne-Sophie Sarthou , Valentin Loux , Marie Vidal , Pascal Bonnarme et al.
Genome Announcements, 2016, 4 (4), pp.e00669-16. ⟨10.1128/genomea.00669-16⟩
Article dans une revue hal-03649175 v1
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Distribution of dehalococcoidia in the anaerobic deep water of a remote meromictic crater lake and detection of dehalococcoidia-derived reductive dehalogenase homologous genes

Corinne Biderre-Petit , Eric Dugat-Bony , Mickaël Mege , Nicolas Parisot , Lorenz Adrian et al.
PLoS ONE, 2016, 11 (1), ⟨10.1371/journal.pone.0145558⟩
Article dans une revue hal-01599389 v2
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Draft Genome Sequence of Lactobacillus delbrueckii subsp. bulgaricus CFL1, a Lactic Acid Bacterium Isolated from French Handcrafted Fermented Milk

Julie Meneghel , Eric Dugat-Bony , Françoise Irlinger , Valentin Loux , Marie Vidal et al.
Genome Announcements, 2016, 4 (2), pp.e00052-16. ⟨10.1128/genomea.00052-16⟩
Article dans une revue hal-03649172 v1
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Draft genome sequence of Corynebacterium variabile Mu292, isolated from Munster, a french smear-ripened cheese

Eric Dugat-Bony , Anne-Sophie Sarthou , Valentin Loux , Marie Vidal , Pascal Bonnarme et al.
Genome Announcements, 2016, 4 (4), ⟨10.1128/genomeA.00669-16⟩
Article dans une revue hal-01480898 v1
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Investigation of the activity of the microorganisms in a reblochon-style cheese by metatranscriptomic analysis

Christophe C. Monnet , Eric Dugat-Bony , Dominique Swennen , Jean-Marie Beckerich , Francoise F. Irlinger et al.
Frontiers in Microbiology, 2016, 7, ⟨10.3389/fmicb.2016.00536⟩
Article dans une revue hal-02633875 v1
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Overview of a surface-ripened cheese community functioning by meta-omics analyses

Eric Dugat-Bony , Cecile Straub , Aurélie Teissandier , Djamila Onesime , Valentin Loux et al.
PLoS ONE, 2015, 10 (4), pp.e0124360. ⟨10.1371/journal.pone.0124360⟩
Article dans une revue hal-01195505 v1
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Cheese rind microbial communities: diversity, composition and origin

Francoise Irlinger , Séverine Layec , Sandra Hélinck , Eric Dugat-Bony
FEMS Microbiology Letters, 2015, 362 (1), pp.1-11. ⟨10.1093/femsle/fnu015⟩
Article dans une revue (article de synthèse) hal-01535274 v1
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Escherichia coli O157:H7 Super-Shedder and Non-Shedder Feedlot Steers Harbour Distinct Fecal Bacterial Communities

Yong Xu , Eric Dugat-Bony , Rahat Zaheer , Lorna Selinger , Ruth Barbieri et al.
PLoS ONE, 2014, 9 (5), ⟨10.1371/journal.pone.0098115⟩
Article dans une revue hal-01195479 v1

Metagenomic insights into microbial metabolism affecting arsenic dispersion in Mediterranean marine sediments

Frédéric Plewniak , Sandrine Koechler , Benjamin Navet , Eric Dugat-Bony , Olivier Bouchez et al.
Molecular Ecology, 2013, 22 (19), pp.4870-4883. ⟨10.1111/mec.12432⟩
Article dans une revue istex hal-01026453 v1
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Gene Capture Coupled to High-Throughput Sequencing as a Strategy for Targeted Metagenome Exploration

Jérémie Denonfoux , Nicolas Parisot , Eric Dugat-Bony , Corinne Petit , Delphine Boucher et al.
DNA Research, 2013, 20 (2), pp. 1-12. ⟨10.1093/dnares/dst001⟩
Article dans une revue hal-00783545 v1

KASpOD a web service for highly specific and explorative oligonucleotide design

Nicolas Parisot , Jérémie Denonfoux , Eric Dugat-Bony , Pierre Peyret , Eric Peyretaillade
Bioinformatics, 2012, 28 (23), pp.3161-3162. ⟨10.1093/bioinformatics/bts597⟩
Article dans une revue hal-02651992 v1

Annotation of microsporidian genomes using transcriptional signals.

Eric Peyretaillade , Nicolas Parisot , Valérie Polonais , Sébastien Terrat , Jérémie Denonfoux et al.
Nature Communications, 2012, 3 (1), pp.1137. ⟨10.1038/ncomms2156⟩
Article dans une revue hal-00813939 v1
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Detecting unknown sequences with DNA microarrays: explorative probe design strategies.

Eric Dugat-Bony , Eric Peyretaillade , Nicolas Parisot , Corinne Biderre-Petit , Faouzi Jaziri et al.
Environmental Microbiology, 2012, 14 (2), pp.356-71. ⟨10.1111/j.1462-2920.2011.02559.x⟩
Article dans une revue istex hal-00822134 v1
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In situ TCE degradation mediated by complex dehalorespiring communities during biostimulation processes

Eric Dugat-Bony , Corinne Biderre-Petit , Faouzi Jaziri , Maude M. David , Jérémie Denonfoux et al.
Microbial Biotechnology, 2012, 5 (5 SI), pp.642-653. ⟨10.1111/j.1751-7915.2012.00339.x⟩
Article dans une revue hal-00747255 v1
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HiSpOD: probe design for functional DNA microarrays.

Eric Dugat-Bony , Mohieddine Missaoui , Eric Peyretaillade , Corinne Biderre-Petit , Ourdia Bouzid et al.
Bioinformatics, 2011, 27 (5), pp.641-8. ⟨10.1093/bioinformatics/btq712⟩
Article dans une revue hal-00842882 v1
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Identification of microbial communities involved in the methane cycle of a freshwater meromictic lake.

Corinne Biderre-Petit , Didier Jézéquel , Eric Dugat-Bony , Filipa Lopes , Jan Kuever et al.
FEMS Microbiology Ecology, 2011, 77 (3), pp.533-45. ⟨10.1111/j.1574-6941.2011.01134.x⟩
Article dans une revue hal-00842871 v1
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Exploration of horizontal gene transfer between transplastomic tobacco and plant-associated bacteria

Sandrine Demanèche , Jean-Michel Monier , Eric Dugat-Bony , Pascal Simonet
FEMS Microbiology Ecology, 2011, 78 (1), pp.129-136. ⟨10.1111/j.1574-6941.2011.01126.x⟩
Article dans une revue hal-00630134 v1
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Detecting variants with Metabolic Design, a new software tool to design probes for explorative functional DNA microarray development.

Sébastien Terrat , Eric Peyretaillade , Olivier Gonçalves , Eric Dugat-Bony , Fabrice Gravelat et al.
BMC Bioinformatics, 2010, 11 (1), pp.478. ⟨10.1186/1471-2105-11-478⟩
Article dans une revue hal-00529644 v1

Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation

Eric Peyretaillade , Olivier Gonçalves , Sébastien Terrat , Eric Dugat-Bony , Patrick Wincker et al.
BMC Genomics, 2009, 10 (1), ⟨10.1186/1471-2164-10-607⟩
Article dans une revue hal-01888038 v1
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Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation

Eric Peyretaillade , Olivier Gonçalves , Sébastien Terrat , Eric Dugat-Bony , Patrick Wincker et al.
BMC Genomics, 2009, 10, pp.607. ⟨10.1186/1471-2164-10-607⟩
Article dans une revue hal-00461524 v1

Recherche et caractérisation de nouveaux bactériophages infectant les bactéries d’affinage des fromages : Présentation du projet SURPHAGES

Hugo Le Lan , Sarah Chuzeville , Didier Goux , Angélique Hennard , Eric Dugat-Bony et al.
5e Journée de la Fédération de Recherche Régionale "Sécurité sanitaire, Bien être & Aliments durables" SéSAD, Nov 2024, Caen, France
Communication dans un congrès hal-04794921 v1

Drivers of microbial diversity in French Protected designation of Origin (PDO) cheeses

Francoise Irlinger , Mahendra Mariadassou , Eric Dugat-Bony , Cécile Neuvéglise , Olivier Rué et al.
IDF World Dairy Science, Oct 2024, Paris, France
Communication dans un congrès hal-04820075 v1

MetaPDOcheese : investigation of the drivers of microbial communities from French PDO milks and cheeses

Francoise Irlinger , Mahendra Mariadassou , Eric Dugat-Bony , Cécile Neuvéglise , Olivier Rué et al.
FORUM ON FERMENTED FOODS, COST PIMENTO, May 2023, Lyon, France
Communication dans un congrès hal-04221356 v1
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Exploration of viral diversity in fermented foods of plant origin

Julia Gendre , Claire Le Marrec , Marie-Agnès Petit , Stephane Chaillou , Sophie Landaud et al.
7th International ISEKI-Food Conference, Iseki-Food Association, Jul 2023, Palaiseau (91), France
Communication dans un congrès hal-04214649 v1
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Advances in understanding the ecology of bacteriophages in cheese

Thomas Paillet , Julien Lossouarn , Quentin Lamy-Besnier , Marie-Agnès Petit , Eric Dugat-Bony
Phages in Lyon 2023, Nov 2023, Lyon, France
Communication dans un congrès hal-04416383 v1

Optimisation de la composition des laits et la qualité nutritionnelle, probiotique et sensorielle des produits laitiers par les pratiques d'élevage des vaches laitières (amont) et l'ajout de ferments (aval)

Benoit Graulet , Francoise Irlinger , Eric Dugat-Bony , Sophie Landaud-Liautaud , Céline Delbès et al.
Webinaire "Glande mammaire, lait" Galactinnov, Nov 2021, Visio Conférence, France
Communication dans un congrès hal-04823848 v1

Stability and functional redundancy of a microbial cheese ecosystem subjected to a perturbation: presentation of several case studies.

Dominique Swennen , Gersende Gonez , Stevenn Volant , Eric Dugat-Bony , Sandra Helinck et al.
IDF International Cheese Science and Technology Symposium, Jun 2021, Virtual conference, Canada
Communication dans un congrès hal-04441076 v1
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Bacteriophages on the cheese surface: what diversity and what ecological role?

Eric Dugat-Bony , Thomas Paillet , Julien Lossouarn , Marie-Agnès Petit , Stéphane Chaillou
IDF International Cheese Science and Technology Symposium, Jun 2021, Québec, Canada
Communication dans un congrès hal-03298693 v1
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Isolation and characterization of phage-host couples from Epoisses cheese rind

Thomas Paillet , Julien Lossouarn , Marie-Agnès Petit , Eric Dugat-Bony
IDF International Cheese Science and Technology Symposium, Jun 2021, Québec, Canada
Communication dans un congrès hal-03298696 v1
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Inhibition du contaminant Cladosporium cladosporoides par des souches fongiques naturelles de l'écosystème laitier dans un contexte fromager

Steve Labrie , Eric Dugat-Bony
ANTIMIC 2019, Jul 2019, Lille, France
Communication dans un congrès hal-04416576 v1

Caractérisation et modélisation des populations de bactériophages de la croûte de fromages (type époisses) sous différentes conditions environnementales d’affinage

Stephane Chaillou , Eric Dugat-Bony , Julien Lossouarn , Marie-Agnès Petit , Mahendra Mariadassou et al.
15. Congrès de la Société Française de Microbiologie (SFM), Société Française de Microbiologie (SFM). FRA., Sep 2019, Paris, France
Communication dans un congrès hal-02789388 v1
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Ecological modelling of phage, bacterial and yeast populations structure in Epoisses cheese under changing ripening conditions using factorial experimental design and metavirome analysis

Eric Dugat-Bony , Julien Lossouarn , Mahendra Mariadassou , Daniel Picque , Marie-Agnès Petit et al.
MD 2019 : 5th International Conference on Microbial Diversity, Sep 2019, Catania, Italy
Communication dans un congrès hal-04416628 v1

Ecological modelling of phages, bacterial and yeast population structure in smear washed-rind cheese under various environmental ripening conditions using factorial experimental design and metavirome analysis

Eric Dugat-Bony , Julien Lossouarn , Marie-Agnès Petit , Stephane Chaillou
5. International Conference on Microbial Diversity 2019, Sep 2019, Catane, Italy
Communication dans un congrès hal-02787377 v1

Characterization and modelling of phages population structure in smear washed-rind cheese under various environmental ripening conditions

Eric Dugat-Bony , Julien Lossouarn , Marie-Agnès Petit , Stephane Chaillou
Phages in Bordeaux, Réseau Thématique Pluridisciplinaire PHAGES.fr., Sep 2018, Bordeaux, France
Communication dans un congrès hal-02785802 v1

A semi-automatic modelling approach for the production and freeze drying of lactic acid bacteria

Thomas Chabin , Marc Barnabe , Alberto Tonda , Nadia Boukhelifa , Fernanda Fonseca et al.
10. International Conference on Simulation and Modelling in the Food and Bio-Industry, FOODSIM 2018. Eurosis, 2018., Apr 2018, Ghent, Belgium
Communication dans un congrès hal-02266291 v1
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The effect of reduced sodium chloride content on the development of fluorescent Pseudomonas in a Reblochon-like cheese

Sandra Hélinck , Eric Dugat-Bony , Sebastien Fraud , Nadège Bel , Sarah Chuzeville et al.
Microbial Spoilers in Food 2017, Jun 2017, Quimper, France
Communication dans un congrès hal-01572164 v1
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An high-throughput molecular tool for highlighting the eukaryotic food microbial communities : application on 12 french cheese varieties

Jeremie Denonfoux , Stéphanie Ferreira , Lucille Garnier , Anne-Sophie Sarthou , Pascal Bonnarme et al.
7. Congress of European Microbiologists (FEMS 2017), Jul 2017, Valencia, Spain
Communication dans un congrès hal-01567202 v1

FORTRESS : Impact of microbial diversity on the barrier effect against an exogenous species

Eric Dugat-Bony , Philippine de Barbeyrac , Mahendra Mariadassou , Cecile Callon , Pascal Bonnarme et al.
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Communication dans un congrès hal-01608159 v1
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Who is doing what on the cheese surface? Overview of the cheese microbial ecosystem functioning by metatranscriptomic analyses

Eric Dugat-Bony
Summer school 2016 in metagenomics, Institut Pasteur [Paris]. FRA., Sep 2016, Paris, France. pp.1
Communication dans un congrès hal-01572175 v1
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Ecology and diversity of yeasts in fermented food ecosystems

Thibault Nidelet , Maria Belen Carbonetto , Eric Dugat-Bony , Cecile Callon , Céline Delbès et al.
16. International Symposium on Microbial Ecology - ISME16, Aug 2016, Montréal, Canada
Communication dans un congrès hal-01606838 v1

Accessing virus genomes out of metagenomic data: improving statistical and bioinformatics analytic tools to better assess the contribution of phages on microbial ecosystems

Marianne de Paepe , Eric Dugat-Bony , Jérôme Hamelin , Mahendra Mariadassou , Kim Milferstedt et al.
Phages On Marseille, Nov 2016, Marseille, France. pp.1
Communication dans un congrès hal-01531724 v1

Métatranscriptomique : l'exemple du fromage

Eric Dugat-Bony
École Chercheur Écologie Microbienne, Jun 2016, Pont-à-Mousson, France
Communication dans un congrès hal-01572173 v1

Nouveau regard sur la diversité microbienne de fromages français grâce aux outils NGS

Eric Dugat-Bony , Lucille Garnier , Jeremie Denonfoux , Stéphanie Ferreira , Pascal Bonnarme et al.
20. Colloque du Club des Bactéries Lactiques, Jun 2015, Lille, France
Communication dans un congrès hal-01603506 v1

Fungal secondary metabolites from Monascus spp. reduce methane production by affecting rumen methanogenic Archaea diversity in wethers

Milka Popova , Nicolas Parisot , Céline Ribière , Jérémie Denonfoux , Eric Dugat-Bony et al.
Greenhouse Gases and Animal Agriculture Conference, 2013, Dublin, Ireland
Communication dans un congrès hal-02746467 v1

MetaExploArrays: a large-scale oligonucleotide probe design software for explorative DNA microarrays

Faouzi Jaziri , David R.C. Hill , Nicolas Parisot , Jeremie Denonfoux , Eric Dugat-Bony et al.
13. International Conference on Parallel and Distributed Computing, Applications and Technologies, Dec 2012, Bejing, China. ⟨10.1109/PDCAT.2012.94⟩
Communication dans un congrès hal-01393662 v1
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Détermination de sondes oligonucléotidiques pour biopuces phylogénétiques en environnement grille de calcul

Faouzi Jaziri , Sébastien Cipière , Mohieddine Missaoui , Denonfoux Jérémie , Eric Dugat-Bony et al.
Rencontres Scientifiques France Grilles 2011, Sep 2011, Lyon, France
Communication dans un congrès hal-00658712 v1

SURPHAGES: TOWARDS THE CONSTRUCTION OF A LARGE COLLECTION OF DAIRY PHAGES INFECTING NON-ACIDIFYING BACTERIA

Sarah Chuzeville , Marion Dalmasso , Hugo Le Lan , Angélique Hennard , Thomas Paillet et al.
IDF WDS 2024, Oct 2024, Paris, France
Poster de conférence hal-04773299 v1

Establishing a collection of ripening bacteriophages isolated from cheese: insights from the surphages project.

Eric Dugat-Bony , Sarah Chuzeville , Margareth Renault , Angélique Hennard , Hugo Le Lan et al.
9ème colloque du réseau Phages.fr - Phages in Sète, Nov 2024, Sète, France
Poster de conférence hal-04773319 v1
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Evaluation of the ability of smear-ripened cheese microbial communities to colonize pea-protein matrix

Mahtab Shoukat , Eric Dugat-Bony , Vincent Hervé , Dominique Swennen , Marjon H.J. Wells-Bennik et al.
7th International ISEKI-Food Conference, Jul 2023, Paris, France
Poster de conférence hal-04160030 v1
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Genetic and functional diversity of Streptococcus thermophilus strains isolated from Saint-Nectaire PDO cheese area

Anna Grizon , Sébastien Theil , Cécile Callon , Pauline Gerber , Eric Dugat-Bony et al.
First forum on Fermented Foods, May 2023, Lyon, France
Poster de conférence hal-04862920 v1
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Spotlight on the viral diversity of fermented vegetables using viral metagenomics

Julia Gendre , Claire Le Marrec , Stéphane Chaillou , Sophie Landaud , Eric Dugat-Bony
PHAGES in LYON 2023, Nov 2023, Lyon, France
Poster de conférence hal-04444032 v1
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Functional characterization of thermophilic lactic acid bacteria isolated from Saint-Nectaire cheese PDO area

Anna Grizon , Pascal Bonnarme , Cécile Callon , Eric Dugat-Bony , Sandra Helinck et al.
Journée de l'école doctorale SVSAE, Université Clermont-Auvergne, May 2022, Clermont-Ferrand, France
Poster de conférence hal-04862890 v1
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Bacteriophages infecting surface bacteria from a smear-ripened cheese are persistent and contaminate the dairy plant

Thomas Paillet , Julien Lossouarn , Clarisse Figueroa , Inès Pedros , Cédric Midoux et al.
Viruses of Microbes (VoM) 2022, Jul 2022, Guimarães, Portugal
Poster de conférence hal-04416527 v1
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Impact of iron on structuration & functioning of cheese microbial communities

Mahtab Shoukat , Eric Dugat-Bony , Vincent Hervé , Dominique Swennen , Pascal Bonnarme
Food Micro 2022 (Next Generation Challenges in Food Microbiology), Aug 2022, Athens, Greece
Poster de conférence hal-03986314 v1
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Mise au point d’une méthode d’extraction de particules virales à partir de légumes fermentés à des fins d’analyse de métaviromes.

Julia Gendre , Claire Le Marrec , Marie-Agnès Petit , Sophie Landaud , Eric Dugat-Bony
17e congrès intitulé "La microbiologie dans tous ses états", Oct 2022, Montpellier (FR), France. 2022
Poster de conférence hal-03966973 v1
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New virulent bacteriophages isolated from the surface of Epoisses cheese infect ripening bacteria

Thomas Paillet , Julien Lossouarn , Inès Pedros , Cédric Midoux , Olivier Rué et al.
Sixth symposium of the French PHAGE Network, Oct 2021, Roscoff, France
Poster de conférence hal-03441698 v1
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Testing markers to characterize microbial communities in food ecosystems using a metagenomics approach

Claire Vincent , Serge Casaregola , Monika Coton , Céline Delbès , Hugo Devillers et al.
JOBIM, Jun 2020, Montpellier, France
Poster de conférence hal-02914960 v1
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Reduction / substitution of sodium chloride in cheese: impact on the development of the technological flora and the potential of implantation of spoilers

Sandra Helinck , Eric Dugat-Bony , Nadège Bel , Angélique Pulli , Sébastien Fraud et al.
The 10th Cheese Symposium (2018), Apr 2018, Rennes, France
Poster de conférence hal-04416787 v1

How to design an efficient and robust pipeline for 16S rRNA-gene sequence analysis to improve our understanding on microbial communities?

Lucas Auer , Laurent Cauquil , Stephane Chaillou , Céline Delbès , Eric Dugat-Bony et al.
JOBIM 16. Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015
Poster de conférence hal-01195512 v1
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Design of a functional DNA microarray targeting the methanogenic community of complex anaerobic ecosystems

Ourdia Bouzid , Corinne Biderre-Petit , Eric Dugat-Bony , Mohieddine Missaoui , Diego Morgavi et al.
7. Joint Symposium of Rowett-INRA 2010, Jun 2010, Aberdeen, United Kingdom. 2010
Poster de conférence hal-02823797 v1