Eric Tannier
Publications
Publications
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Du serment doctoral d'intégrité scientifique à un serment personnel : un atelier d'écriture et de réflexion sur la responsabilité et le rôle des scientifiques dans la société2026 |
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Botascopia: a digital setup for generating low tech plant field guides2025 |
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GOntact: using chromatin contacts to infer Gene Ontology enrichments for cis -regulatory elements2022 |
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The genome of the medieval Black Death agent (extended abstract)2013 |
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Santés en communs.Université Claude Bernard Lyon 1. 2025 |
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Approche globale des éthiques dans les relations sociétés/natureCNRS - INEE. 2023, pp.211-219 |
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Sciences, Environnements et Sociétés[0] Inria. 2019 |
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Precise detection of rearrangement breakpoints in mammalian chromosomes[Research Report] RR-6533, INRIA. 2008, pp.26 |
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A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and its Application to Mammalian Genomes[Research Report] RR-6494, INRIA. 2008, pp.26 |
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Perfect Sorting by ReversalsRR-5540, INRIA. 2005, pp.13 |
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Sorting by reversals in subquadratic time[Research Report] RR-5097, INRIA. 2004 |
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Aevol 4b: Bridging the gap between artificial life and bioinformaticsALIFE 2024 - International Conference for Artificial Life, Jul 2024, Copenhague, Denmark. pp.41-49, ⟨10.1162/isal_a_00716⟩ |
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Back to the trees: Identifying plants with Human IntelligenceLIMITS 2023 - Ninth Workshop on Computing within Limits, Jul 2023, Virtuel - Online, France. pp.1-11, ⟨10.21428/bf6fb269.265c52ce⟩ |
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Comment la reconstruction de génomes ancestraux peut aider à l'assemblage de génomes actuelsJournées Ouvertes Biologie Informatique Mathématiques, 2016, Lyon, France |
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Dating with transfersJournées Ouvertes Biologie Informatique Mathématiques, 2016, Lyon, France |
Comparative Genomics on Artificial LifeComputability in Europe, Jun 2016, Paris, France. pp.35-44 |
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In silico experimental evolution provides independent and challenging benchmarks for comparative genomicsJournées ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. pp.79-82 |
Genome Rearrangements on both Gene Order and Intergenic RegionsWABI 2016, 2016, Aarhus, Denmark. pp.162-173 |
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Nucleotide, gene and genome evolution : a score to bind them allJournées Ouvertes Biologie Informatique Mathématiques, 2016, Lyon, France |
Preserving Inversion Phylogeny ReconstructionWABI 2012 - 12th International Workshop on Algorithms in Bioinformatics, Sep 2012, Ljubljana, Slovenia. pp.1-13, ⟨10.1007/978-3-642-33122-0_1⟩ |
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Guided genome halving: provably optimal solutions provide good insights into the preduplication ancestral genome of Saccharomyces cerevisiae.Pacific Symposium on Biocomputing, Jan 2010, Big Island, Hawaï, United States. pp.21-30, ⟨10.1142/9789814295291_0004⟩ |
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Prediction of Contiguous Regions in the Amniote Ancestral GenomeISBRA 2009, 5th International Symposium on Bioinformatics Research and Applications,, May 2009, Fort Lauderdale, Florida, United States. ⟨10.1007/978-3-642-01551-9_18⟩ |
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational MethodsRECOMB International Workshop on Comparative Genomics, Sep 2009, Budapest, Hungary. pp.1-12, ⟨10.1007/978-3-642-04744-2_1⟩ |
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Multichromosomal Genome Median and Halving ProblemsInternational Workshop on Algorithms in Bioinformatics (WABI), Sep 2008, Karlsruhe, Germany. pp.1-13, ⟨10.1007/978-3-540-87361-7_1⟩ |
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Perfect DCJ rearrangementRECOMB-CG: Comparative Genomics, Oct 2008, Paris, France. pp.158-169, ⟨10.1007/978-3-540-87989-3_12⟩ |
Advances on Stochastic Local Search Algorithms for the Genomic Median ProblemInternational Conference on Metaheuristics and Nature Inspired Computing (META), Oct 2008, Hammamet, Tunisie, Tunisia. pp.266-276 |
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Reactive Stochastic Local Search Algorithms for the Genomic Median ProblemEuropean Conference on Evolutionary Computation in Combinatorial Optimization (EvoCOP), Mar 2008, Naples, Italy. pp.266-276, ⟨10.1007/978-3-540-78604-7_23⟩ |
Prédiction de synténies dans le génome ancestral des amniotesJournées Ouvertes de Biologie, Informatique et Mathématiques, JOBIM 2008, Dec 2008, Vancouver, Canada. pp.141-148 |
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The solution space of sorting by reversals3rd International Symposium on Bioinformatics Research and Applications (ISBRA 2007), May 2007, Atlanta, GA, United States. pp.293-304, ⟨10.1007/978-3-540-72031-7_27⟩ |
Effective Stochastic Local Search Algorithms for the Genomic Median ProblemDoctoral Symposium on Engineering Stochastic Local Search Algorithms (SLS-DS), Sep 2007, Bruxelles, Belgium. pp.1-5 |
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Perfect sorting by reversalsInternational Computing and Combinatorics Conference, Aug 2005, Kunming, China. pp.42-51, ⟨10.1007/11533719_7⟩ |
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Sorting by reversals in subquadratic timeAnnual Symposium on Combinatorial Pattern Matching (CPM), Jul 2004, Istanbul, Turkey. pp.1-13, ⟨10.1007/978-3-540-27801-6_1⟩ |
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Connected Joins in GraphsInternational Conference on Integer Programming and Combinatorial Optimization (IPCO), Jun 2001, Utrecht, Netherlands. pp.383-395 |
Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree ReconciliationMultiple Sequence Alignment, 2231, Humana, pp.241-260, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1036-7_15⟩ |
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Ancestral Genome Organization as a Diagnosis Tool for PhylogenomicsScornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book, pp.2.5:1--2.5:19, 2020 |
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Comparative Methods for Reconstructing Ancient Genome OrganizationComparative Genomics: Methods and Protocols, pp.343 - 362, 2017, ⟨10.1007/978-1-4939-7463-4_13⟩ |
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Ancestral Reconstruction: Theory and PracticeRichard M. Kliman. Encyclopedia of Evolutionary Biology, Elsevier, pp.70-77, 2016, ⟨10.1016/B978-0-12-800049-6.00166-9⟩ |
Sorting Signed Permutations by Reversal (Reversal Sequence)Kao, Ming-Yang. Encyclopedia of Algorithms, Springer, pp.2028-2032, 2016, 978-1-4939-2863-7 |
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Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years LaterModels and Algorithms for Genome Evolution, 19, Springer, pp.47-62, 2013, Series Computational Molecular Biology, 978-1-4471-5297-2 |
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La fin d'un tout petit monde2020 |
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MaxTiC: Fast Ranking Of A Phylogenetic Tree By Maximum Time Consistency With Lateral Gene Transfers2017, ⟨10.1101/127548⟩ |
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Evolution Combinatoire, Algorithmique des ChromosomesBio-Informatique, Biologie Systémique [q-bio.QM]. Université Claude Bernard - Lyon I, 2011 |
Comparative genomics : international workshop, RECOMB-CG 2010, Ottawa, Canada, October 9-11, 2010 : proceedingsEric Tannier. International Workshop on Comparative Genomics, Oct 2010, Ottawa, Canada. Springer, 2010, Lecture notes in computer science, 978-3-642-16180-3 |
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RECOMB Satellite Workshop on Comparative Genomics8. Annual RECOMB Satellite Workshop on Comparative Genomics, 2010, Ottawa, Canada. Springer, pp.303, 2010, 978-3-642-16181-0 |