Eric Tannier

Chercheur Inria
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Publications

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The Silene latifolia genome and its giant Y chromosome

Carol Moraga , Catarina Branco , Quentin Rougemont , Paris Veltsos , Pavel Jedlička et al.
Science, 2025, 387 (6734), pp.630-636. ⟨10.1126/science.adj7430⟩
Article dans une revue hal-04293712 v1
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Response to “On the impact of incomplete taxon sampling on the relative timing of gene transfer events”

Théo Tricou , Eric Tannier , Damien de Vienne
PLoS Biology, 2024, 22 (3), pp.e3002557. ⟨10.1371/journal.pbio.3002557⟩
Article dans une revue hal-04515190 v1

Se réapproprier la production de connaissance

Alexandre Monnin , Eric Tannier , Maël Thomas
Analyse Opinion Critique, 2023, https://aoc.media/opinion/2023/05/17/se-reapproprier-la-production-de-connaissance/
Article dans une revue hal-04102099 v1
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Host-symbiont-gene phylogenetic reconciliation

Hugo Menet , Alexia Nguyen Trung , Vincent Daubin , Eric Tannier
Peer Community Journal, 2023, pp.1-22. ⟨10.24072/pcjournal.273⟩
Article dans une revue hal-03781023 v2
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PhylteR: Efficient Identification of Outlier Sequences in Phylogenomic Datasets

Aurore Comte , Théo Tricou , Eric Tannier , Julien Joseph , Aurélie Siberchicot et al.
Molecular Biology and Evolution, 2023, 40 (11), pp.msad234. ⟨10.1093/molbev/msad234⟩
Article dans une revue hal-03995366 v3
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Ghost lineages can invalidate or even reverse findings regarding gene flow

Théo Tricou , Eric Tannier , Damien M. de Vienne
PLoS Biology, 2022, 20 (9), pp.e3001776. ⟨10.1371/journal.pbio.3001776⟩
Article dans une revue hal-03781025 v2
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The crisis of the scientific mind : an investigation, a tragedy and a collective redistribution of roles

Eric Tannier , Vincent Daubin , Sophie Quinton
Les Cahiers de Framespa : e-Storia, 2022, 40, ⟨10.4000/framespa.13150⟩
Article dans une revue hal-03714886 v1
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Phylogenetic reconciliation

Hugo Menet , Vincent Daubin , Eric Tannier
PLoS Computational Biology, 2022, 18 (11), pp.e1010621. ⟨10.1371/journal.pcbi.1010621⟩
Article dans une revue hal-03258402 v2
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A hapless mathematical contribution to biology

Eric Tannier
History and Philosophy of the Life Sciences, 2022, 44 (34), ⟨10.1007/s40656-022-00514-x⟩
Article dans une revue hal-03153696 v3
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Long-range promoter–enhancer contacts are conserved during evolution and contribute to gene expression robustness

Alexandre Laverré , Eric Tannier , Anamaria Necsulea
Genome Research, 2022, 32 (2), pp.280-296. ⟨10.1101/gr.275901.121⟩
Article dans une revue hal-03559410 v1
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Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation

Simon Penel , Hugo Menet , Théo Tricou , Vincent Daubin , Eric Tannier
Bioinformatics, 2022, 38 (8), pp.2350-2352. ⟨10.1093/bioinformatics/btac062⟩
Article dans une revue hal-03563666 v1
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Ghost lineages highly influence the interpretation of introgression tests

Théo Tricou , Eric Tannier , Damien M. de Vienne
Systematic Biology, 2022, 71 (5), pp.1147-1158. ⟨10.1093/sysbio/syac011⟩
Article dans une revue hal-03455377 v2

L'informatique les pieds sur Terre

Eric Tannier
Interstices, 2020
Article dans une revue hal-02953016 v1
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Evolutionary superscaffolding and chromosome anchoring to improve Anopheles genome assemblies

Robert Waterhouse , Sergey Aganezov , Yoann Anselmetti , Jiyoung Lee , Livio Ruzzante et al.
BMC Biology, 2020, 18 (1), pp.1-20. ⟨10.1186/s12915-019-0728-3⟩
Article dans une revue hal-02455139 v1
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Treerecs: an integrated phylogenetic tool, from sequences to reconciliations.

Nicolas Comte , Benoît Morel , Damir Hasic , Laurent Guéguen , Bastien Boussau et al.
Bioinformatics, 2020, 36 (18), pp.4822-4824. ⟨10.1093/bioinformatics/btaa615⟩
Article dans une revue hal-02883386 v1
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Zombi: A phylogenetic simulator of trees, genomes and sequences that accounts for dead lineages

Adrian A Davin , Theo Tricou , Eric Tannier , Damien M. de Vienne , Gergely J Szöllosi
Article dans une revue hal-02302010 v1

Quand les branches de l’arbre du vivant s’entremêlent

Eric Tannier , Bastien Boussau , Vincent Daubin
Pour la science, 2019, ⟨10.3917/pls.506.0056⟩
Article dans une revue hal-02414245 v1
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Gene tree species tree reconciliation with gene conversion

Damir Hasic , Eric Tannier
Journal of Mathematical Biology, 2019, 78 (6), pp.1981-2014. ⟨10.1007/s00285-019-01331-w⟩
Article dans une revue hal-01495707 v2

Gene tree reconciliation including transfers with replacement is NP-hard and FPT

Damir Hasic , Eric Tannier
Journal of Combinatorial Optimization, 2019, 38 (2), pp.502-544. ⟨10.1007/s10878-019-00396-z⟩
Article dans une revue hal-02301454 v1
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Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes

Yoann Anselmetti , Wandrille Duchemin , Eric Tannier , Cedric Chauve , Sèverine Bérard
BMC Genomics, 2018, 19 (S2), pp.1-15. ⟨10.1186/s12864-018-4466-7⟩
Article dans une revue hal-01791884 v1
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Gene transfers can date the tree of life

Adrián Davín , Eric Tannier , Tom A Williams , Bastien Boussau , Vincent Daubin et al.
Nature Ecology & Evolution, 2018, 2 (5), pp.904-909. ⟨10.1038/s41559-018-0525-3⟩
Article dans une revue hal-01913812 v1
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RecPhyloXML: a format for reconciled gene trees

Wandrille Duchemin , Guillaume Gence , Anne-Muriel Arigon Chifolleau , Lars Arvestad , Mukul Bansal et al.
Bioinformatics, 2018, 34 (21), pp.3646-3652. ⟨10.1093/bioinformatics/bty389⟩
Article dans une revue lirmm-01800296 v1
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Algorithms for computing the double cut and join distance on both gene order and intergenic sizes

Guillaume Fertin , Géraldine Jean , Eric Tannier
Algorithms for Molecular Biology, 2017, 12, 16 (11 p.). ⟨10.1186/s13015-017-0107-y⟩
Article dans une revue hal-01533200 v1
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Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses

Edwin Jacox , Mathias Weller , Eric Tannier , Celine Scornavacca
Bioinformatics, 2017, 33 (7), pp.980-987. ⟨10.1093/bioinformatics/btw778⟩
Article dans une revue hal-01526643 v1
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DeCoSTAR: Reconstructing the ancestral organization of genes or genomes using reconciled phylogenies

Wandrille Duchemin , Yoann Anselmetti , Murray Patterson , Yann Ponty , Sèverine Bérard et al.
Genome Biology and Evolution, 2017, 9 (5), pp.1312-1319. ⟨10.1093/gbe/evx069⟩
Article dans une revue hal-01503766 v2
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Efficient gene tree correction guided by genome evolution

Emmanuel Noutahi , Magali Semeria , Manuel Lafond , Jonathan Seguin , Bastien Boussau et al.
PLoS ONE, 2016, 11 (8), e0159559 (22 p.). ⟨10.1371/journal.pone.0159559⟩
Article dans une revue hal-01162963 v4
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Genome rearrangements with indels in intergenes restrict the scenario space

Laurent Bulteau , Guillaume Fertin , Eric Tannier
BMC Bioinformatics, 2016, 17 (Suppl 14), 426 (7 p.). ⟨10.1186/s12859-016-1264-6⟩
Article dans une revue hal-01396842 v1
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Francisella IglG protein and the DUF4280 proteins: PAAR-like proteins in non-canonical Type VI secretion systems?

Claire Lays , Eric Tannier , Thomas Henry
Microbial Cell , 2016, 3 (11), pp.576-578. ⟨10.15698/mic2016.11.543⟩
Article dans une revue hal-01394403 v2
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Breaking Good: Accounting for Fragility of Genomic Regions in Rearrangement Distance Estimation

Priscila Biller , Laurent Guéguen , Carole Knibbe , Eric Tannier
Genome Biology and Evolution, 2016, 8 (5), pp.1427-1439. ⟨10.1093/gbe/evw083⟩
Article dans une revue hal-01334923 v1
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Karyotype and Gene Order Evolution from ReconstructedExtinct Ancestors Highlight Contrasts in Genome Plasticity ofModern Rosid Crops

Florent Murat , Rongzhi R. Zhang , Sébastien Guizard , Haris Gavranovic , Raphael Flores et al.
Genome Biology and Evolution, 2015, 7 (3), pp.735-749. ⟨10.1093/gbe/evv014⟩
Article dans une revue hal-01133906 v1
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Ancestral gene synteny reconstruction improves extant species scaffolding

Yoann Anselmetti , Vincent Berry , Cedric Chauve , Annie Chateau , Eric Tannier et al.
BMC Genomics, 2015, 16 (Suppl 10), pp.S11. ⟨10.1186/1471-2164-16-S10-S11⟩
Article dans une revue hal-01180303 v2

Genome-scale phylogenetic analysis finds extensive gene transfer among fungi

G.J. Szollosi , Adrián Arellano Davin , Eric Tannier , Vincent Daubin , Bastien Boussau
Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences (1934–1990), 2015, 370, 20140335 (11 p.). ⟨10.1098/rstb.2014.0335⟩
Article dans une revue hal-01218565 v1
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Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies

Magali Semeria , Eric Tannier , Laurent Guéguen
BMC Bioinformatics, 2015, 16 (Suppl 14), pp.S5. ⟨10.1186/1471-2105-16-S14-S5⟩
Article dans une revue hal-01179596 v2
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Moments of genome evolution by Double Cut-and-Join

Priscila Biller , Laurent Guéguen , Eric Tannier
BMC Bioinformatics, 2015, 16 (Suppl 14), pp.S7. ⟨10.1186/1471-2105-16-S14-S7⟩
Article dans une revue hal-01179597 v2
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Reconstruction of an ancestral Yersinia pestis genome and comparison with an ancient sequence

Wandrille Duchemin , Vincent Daubin , Eric Tannier
BMC Genomics, 2015, 16 (Suppl 10), pp.S9. ⟨10.1007/978-3-319-19048-8_16⟩
Article dans une revue hal-01179197 v3

The inference of gene trees with species trees

Gergely Szöllősi , Eric Tannier , Vincent Daubin , Bastien Boussau
Systematic Biology, 2015, Special Issue: Mathematical and Computational Evolutionary Biology (2013), 64 (1), pp.e42-e62. ⟨10.1093/sysbio/syu048⟩
Article dans une revue hal-00915301 v1

Counting and sampling SCJ small parsimony solutions

István Miklós , Sándor Z. Kiss , Eric Tannier
Theoretical Computer Science, 2014, 552, pp.83-98. ⟨10.1016/j.tcs.2014.07.027⟩
Article dans une revue hal-01077270 v1

FPSAC: Fast Phylogenetic Scaffolding of Ancient Contigs

Ashok Rajaraman , Eric Tannier , Cedric Chauve
Bioinformatics, 2013, 29 (23), pp.2987-2994. ⟨10.1093/bioinformatics/btt527⟩
Article dans une revue hal-00859185 v1
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Gene tree correction guided by orthology

Manuel Lafond , Magali Semeria , Krister M. Swenson , Eric Tannier , Nadia El-Mabrouk
BMC Bioinformatics, 2013, 14 (Suppl 15), pp.S5
Article dans une revue hal-00873235 v1

Efficient Exploration of the Space of Reconciled Gene Trees.

Gergely J Szöllosi , Wojciech Rosikiewicz , Bastien Boussau , Eric Tannier , Vincent Daubin
Systematic Biology, 2013, 62 (6), pp.901-912. ⟨10.1093/sysbio/syt054⟩
Article dans une revue hal-00856826 v1

L'ADN, mémoire numérique du vivant

Vincent Daubin , Simon Penel , Eric Tannier
Pour la science, 2013, pp.102-108
Article dans une revue hal-00878875 v1

Lateral Gene Transfer from the Dead.

Gergely J Szöllosi , Eric Tannier , Nicolas Lartillot , Vincent Daubin
Systematic Biology, 2013, 62 (3), pp.386-397. ⟨10.1093/sysbio/syt003⟩
Article dans une revue hal-00784662 v1
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Lateral gene transfer, rearrangement, reconciliation

Murray Patterson , Gergely Szöllősi , Vincent Daubin , Eric Tannier
BMC Bioinformatics, 2013, 14 (Suppl 15), pp.S4
Article dans une revue hal-00873233 v1
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Genome-scale coestimation of species and gene trees.

Bastien Boussau , Gergely J Szöllosi , L. Duret , Manolo Gouy , Eric Tannier et al.
Genome Research, 2013, 23 (2), pp.323-330. ⟨10.1101/gr.141978.112⟩
Article dans une revue hal-00750148 v1

ANGES: reconstructing ANcestral GEnomeS maps.

Bradley R Jones , Ashok Rajaraman , Eric Tannier , Cedric Chauve
Bioinformatics, 2012, 28 (18), pp.2388-2390. ⟨10.1093/bioinformatics/bts457⟩
Article dans une revue hal-00733180 v1
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Linearization of ancestral multichromosomal genomes

Ján Maňuch , Murray Patterson , Roland Wittler , Cedric Chauve , Eric Tannier
BMC Bioinformatics, 2012, 13 (Suppl 19), pp.S11. ⟨10.1186/1471-2105-13-S19-S11⟩
Article dans une revue hal-00773071 v1

Approximating the number of Double Cut-and-Join scenarios

Istvan Miklos , Eric Tannier
Theoretical Computer Science, 2012, 439, pp.30-40. ⟨10.1016/j.tcs.2012.03.006⟩
Article dans une revue hal-00699567 v1
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Lateral gene transfer as a support for the tree of life.

Sophie S Abby , Eric Tannier , Manolo Gouy , Vincent Daubin
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (13), pp.4962-4967. ⟨10.1073/pnas.1116871109⟩
Article dans une revue hal-00752055 v1
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Phylogenetic modeling of lateral gene transfer reconstructs the pattern and relative timing of speciations.

Gergely J Szöllosi , Bastien Boussau , Sophie S Abby , Eric Tannier , Vincent Daubin
Proceedings of the National Academy of Sciences of the United States of America, 2012, 109 (43), pp.17513-17518. ⟨10.1073/pnas.1202997109⟩
Article dans une revue hal-00740292 v1

Evolution of gene neighborhoods within reconciled phylogenies

Sèverine Bérard , Coralie Gallien , Bastien Boussau , Gergely J Szöllosi , Vincent Daubin et al.
Bioinformatics, 2012, 28 (18), pp.i382-i388. ⟨10.1093/bioinformatics/bts374⟩
Article dans une revue hal-00733178 v1

Preface : Satellite Workshop on Comparative Genomics Research in Computational Molecular Biology (RECOMB-CG 2010)

Eric Tannier
Journal of Computational Biology, 2011, 18(9), pp.1-3
Article dans une revue hal-00698246 v1
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Mapping ancestral genomes with massive gene loss: a matrix sandwich problem.

Haris Gavranović , Cedric Chauve , Jérôme Salse , Eric Tannier
Bioinformatics, 2011, 27 (13), pp.i257-65. ⟨10.1093/bioinformatics/btr224⟩
Article dans une revue hal-00680540 v1

L'époque romantique contre la peine de mort

Eric Tannier
incollection, 2011, --, pp.54-56
Article dans une revue hal-00698248 v1

Reconstructing the architecture of the ancestral amniote genome.

Aïda Ouangraoua , Eric Tannier , Cedric Chauve
Bioinformatics, 2011, 27, 27 (19), pp.2664-2671. ⟨10.1093/bioinformatics/btr461⟩
Article dans une revue inria-00635016 v1

HDR - Evolution combinatoire Algorithmique des chromosomes

Eric Tannier
incollection, 2011, --, pp.54-56
Article dans une revue hal-00698247 v1

Comparative Genomics

Eric Tannier
incollection, 2010, 6938, pp.1-12
Article dans une revue hal-00539254 v1

Cassis: detection of genomic rearrangement breakpoints.

Christian Baudet , Claire Lemaitre , Zanoni Dias , Christian Gautier , Eric Tannier et al.
Bioinformatics, 2010, 26 (15), pp.1897-8. ⟨10.1093/bioinformatics/btq301⟩
Article dans une revue hal-00681095 v1

Bayesian sampling of genomic rearrangement scenarios via double cut and join.

István Miklós , Eric Tannier
Bioinformatics, 2010, 26 (24), pp.3012-9. ⟨10.1093/bioinformatics/btq574⟩
Article dans une revue hal-00680633 v1

Ancestral grass karyotype reconstruction unravels new mechanisms of genome shuffling as a source of plant evolution.

Florent Murat , Jian-Hong Xu , Eric Tannier , Michael Abrouk , Nicolas Guilhot et al.
Genome Research, 2010, 20 (11), pp.1545-57. ⟨10.1101/gr.109744.110⟩
Article dans une revue hal-00680636 v1
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Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests

Sophie S. Abby , Eric Tannier , Manolo Gouy , Vincent Daubin
BMC Bioinformatics, 2010, 11 (324), pp.13. ⟨10.1186/1471-2105-11-324⟩
Article dans une revue inria-00527151 v1

Yeast ancestral genome reconstructions: the possibilities of computational methods II.

Cedric Chauve , Haris Gavranovic , Aida Ouangraoua , Eric Tannier
Journal of Computational Biology, 2010, 17 (9), pp.1097-112. ⟨10.1089/cmb.2010.0092⟩
Article dans une revue hal-00681091 v1

Palaeogenomics of plants: synteny-based modelling of extinct ancestors.

Michael Abrouk , Florent Murat , Caroline Pont , Joachim Messing , Scott Jackson et al.
Trends in Plant Science, 2010, 15 (9), pp.479-87. ⟨10.1016/j.tplants.2010.06.001⟩
Article dans une revue istex hal-00681093 v1

Le génome aux ordres des mathématiciens

Eric Tannier
La Recherche, 2010, 439, pp.54-56
Article dans une revue hal-00539457 v1
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Multichromosomal median and halving problems under different genomic distances

Eric Tannier , Chunfang Zheng , David Sankoff
BMC Bioinformatics, 2009, 10 (1), pp.120. ⟨10.1186/1471-2105-10-120⟩
Article dans une revue hal-00784456 v1

Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes

Sèverine Bérard , Annie Chateau , Cedric Chauve , Christophe Paul , Eric Tannier
Journal of Computational Biology, 2009, 16 (10), pp.1287-1309. ⟨10.1089/cmb.2009.0088⟩
Article dans une revue lirmm-00432670 v1

Footprints of Inversions at Present and Past Pseudoautosomal Boundaries in Human Sex Chromosomes

Claire Lemaitre , Marília D.V. Braga , Christian Gautier , M.-F. Sagot , Eric Tannier et al.
Genome Biology and Evolution, 2009, 1(1), pp.56-66
Article dans une revue hal-00428362 v1
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Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation

Claire Lemaitre , Lamia Zaghloul , Marie-France Sagot , Christian Gautier , Alain Arneodo et al.
BMC Genomics, 2009, 10 (1), pp.335. ⟨10.1186/1471-2164-10-335⟩
Article dans une revue hal-00784451 v1

A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes

C. Chauve , Eric Tannier
PLoS Computational Biology, 2008, 4, pp.391-410
Article dans une revue hal-00428245 v1
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Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution

Marília D.V. Braga , Marie-France Sagot , Celine Scornavacca , Eric Tannier
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2008, 5 (3), pp.348-356. ⟨10.1109/TCBB.2008.16⟩
Article dans une revue hal-00428206 v1
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Precise detection of rearrangement breakpoints in mammalian chromosomes

Claire Lemaitre , Eric Tannier , Christian Gautier , Marie-France Sagot
BMC Bioinformatics, 2008, 9 (1), pp.286. ⟨10.1186/1471-2105-9-286⟩
Article dans une revue hal-00784460 v1

Sorting Signed Permutations by Reversal (Reversal Sequence) 2004; Tannier Sagot

Eric Tannier
incollection, 2008, --, pp.860-863
Article dans une revue hal-00428183 v1

Evolution under Reversals: Parsimony and Conservation of Common Intervals

Y. Diekmann , M.-F. Sagot , Eric Tannier
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2007, 4, pp.301-309
Article dans une revue hal-00434588 v1

Advances on sorting by reversals

Eric Tannier , A. Bergeron , M.-F. Sagot
Discrete Applied Mathematics, 2007, 155, pp.881-888
Article dans une revue hal-00434657 v1

On Metric Generators of Graphs

András Sebő , Eric Tannier
Mathematics of Operations Research, 2004, 29, pp.383-393
Article dans une revue hal-00427651 v1

On a modular domination game

S. Gravier , M. Mhalla , Eric Tannier
Theoretical Computer Science, 2003, 306, pp.291-303
Article dans une revue hal-00427433 v1
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Aevol 4b: Bridging the gap between artificial life and bioinformatics

Hugo Daudey , David P. Parsons , Eric Tannier , Vincent Daubin , Bastien Boussau et al.
ALIFE 2024 - International Conference for Artificial Life, Jul 2024, Copenhague, Denmark. pp.41-49, ⟨10.1162/isal_a_00716⟩
Communication dans un congrès hal-04667220 v1
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Back to the trees: Identifying plants with Human Intelligence

Simon Castellan , Jos Käfer , Eric Tannier
LIMITS 2023 - Ninth Workshop on Computing within Limits, Jul 2023, Virtuel - Online, France. pp.1-11, ⟨10.21428/bf6fb269.265c52ce⟩
Communication dans un congrès hal-04121511 v1

Comparative Genomics on Artificial Life

Priscila Biller , Carole Knibbe , Guillaume Beslon , Eric Tannier
Computability in Europe, Jun 2016, Paris, France. pp.35-44
Communication dans un congrès hal-01334930 v1
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In silico experimental evolution provides independent and challenging benchmarks for comparative genomics

Priscila Biller , Eric Tannier , Guillaume Beslon , Carole Knibbe
Journées ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. pp.79-82
Communication dans un congrès hal-01375657 v1

Genome Rearrangements on both Gene Order and Intergenic Regions

Guillaume Fertin , Géraldine Jean , Eric Tannier
WABI 2016, 2016, Aarhus, Denmark. pp.162-173
Communication dans un congrès hal-01334942 v1
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Dating with transfers

Adrián Davín , Gergely J Szöllosi , Eric Tannier , Bastien Boussau , Vincent Daubin
Journées Ouvertes Biologie Informatique Mathématiques, 2016, Lyon, France
Communication dans un congrès hal-01394410 v1
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Comment la reconstruction de génomes ancestraux peut aider à l'assemblage de génomes actuels

Yoann Anselmetti , Vincent Berry , Cedric Chauve , Annie Chateau , Eric Tannier et al.
Journées Ouvertes Biologie Informatique Mathématiques, 2016, Lyon, France
Communication dans un congrès hal-01394409 v1
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Nucleotide, gene and genome evolution : a score to bind them all

Wandrille Duchemin , Vincent Daubin , Eric Tannier
Journées Ouvertes Biologie Informatique Mathématiques, 2016, Lyon, France
Communication dans un congrès hal-01394417 v1

Preserving Inversion Phylogeny Reconstruction

Matthias Bernt , Kun-Mao Chao , Jyun-Wei Kao , Martin Middendorf , Eric Tannier
WABI 2012 - 12th International Workshop on Algorithms in Bioinformatics, Sep 2012, Ljubljana, Slovenia. pp.1-13, ⟨10.1007/978-3-642-33122-0_1⟩
Communication dans un congrès hal-00733188 v1
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Guided genome halving: provably optimal solutions provide good insights into the preduplication ancestral genome of Saccharomyces cerevisiae.

Haris Gavranović , Eric Tannier
Pacific Symposium on Biocomputing, Jan 2010, Big Island, Hawaï, United States. pp.21-30, ⟨10.1142/9789814295291_0004⟩
Communication dans un congrès hal-00681096 v1
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Prediction of Contiguous Regions in the Amniote Ancestral Genome

Aïda Ouangraoua , Frédéric Boyer , Andrew Mcpherson , Eric Tannier , Cedric Chauve
ISBRA 2009, 5th International Symposium on Bioinformatics Research and Applications,, May 2009, Fort Lauderdale, Florida, United States. ⟨10.1007/978-3-642-01551-9_18⟩
Communication dans un congrès hal-00368187 v1

Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods

Eric Tannier
RECOMB International Workshop on Comparative Genomics, Sep 2009, Budapest, Hungary. pp.1-12, ⟨10.1007/978-3-642-04744-2_1⟩
Communication dans un congrès istex hal-00428396 v1
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Perfect DCJ rearrangement

Annie Chateau , Cedric Chauve , Sèverine Bérard , Eric Tannier , Christophe Paul
RECOMB-CG: Comparative Genomics, Oct 2008, Paris, France. pp.158-169, ⟨10.1007/978-3-540-87989-3_12⟩
Communication dans un congrès lirmm-00327258 v1

Advances on Stochastic Local Search Algorithms for the Genomic Median Problem

Renaud Lenne , Christine Solnon , Thomas Stützle , Eric Tannier
International Conference on Metaheuristics and Nature Inspired Computing (META), Oct 2008, Hammamet, Tunisie, Tunisia. pp.266-276
Communication dans un congrès hal-01542519 v1

Multichromosomal Genome Median and Halving Problems

Eric Tannier , C. Zheng , D. Sankoff
International Workshop on Algorithms in Bioinformatics (WABI), Sep 2008, Karlsruhe, Germany. pp.1-13, ⟨10.1007/978-3-540-87361-7_1⟩
Communication dans un congrès istex hal-00428121 v1
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Reactive Stochastic Local Search Algorithms for the Genomic Median Problem

R. Lenne , Christine Solnon , T. Stützle , Eric Tannier , M. Birattari
European Conference on Evolutionary Computation in Combinatorial Optimization (EvoCOP), Mar 2008, Naples, Italy. pp.266-276, ⟨10.1007/978-3-540-78604-7_23⟩
Communication dans un congrès istex hal-00428150 v1

Prédiction de synténies dans le génome ancestral des amniotes

F. Boyer , C. Chauve , Eric Tannier
Journées Ouvertes de Biologie, Informatique et Mathématiques, JOBIM 2008, Dec 2008, Vancouver, Canada. pp.141-148
Communication dans un congrès hal-00428137 v1

Effective Stochastic Local Search Algorithms for the Genomic Median Problem

Renaud Lenne , Christine Solnon , Thomas Stützle , Eric Tannier , Mauro Birattari
Doctoral Symposium on Engineering Stochastic Local Search Algorithms (SLS-DS), Sep 2007, Bruxelles, Belgium. pp.1-5
Communication dans un congrès hal-01542514 v1
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The solution space of sorting by reversals

Marília D.V. Braga , Marie-France Sagot , Celine Scornavacca , Eric Tannier
3rd International Symposium on Bioinformatics Research and Applications (ISBRA 2007), May 2007, Atlanta, GA, United States. pp.293-304, ⟨10.1007/978-3-540-72031-7_27⟩
Communication dans un congrès istex hal-00434566 v1

Perfect sorting by reversals

M.-F. Sagot , Eric Tannier
International Computing and Combinatorics Conference, Aug 2005, Kunming, China. pp.42-51, ⟨10.1007/11533719_7⟩
Communication dans un congrès istex hal-00427848 v1

Sorting by reversals in subquadratic time

Eric Tannier , M.-F. Sagot
Annual Symposium on Combinatorial Pattern Matching (CPM), Jul 2004, Istanbul, Turkey. pp.1-13, ⟨10.1007/978-3-540-27801-6_1⟩
Communication dans un congrès istex hal-00427659 v1

Connected Joins in Graphs

András Sebő , Eric Tannier
International Conference on Integer Programming and Combinatorial Optimization (IPCO), Jun 2001, Utrecht, Netherlands. pp.383-395
Communication dans un congrès hal-00427193 v1

Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation

Manolo Gouy , Eric Tannier , Nicolas Comte , David Parsons
Multiple Sequence Alignment, 2231, Humana, pp.241-260, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1036-7_15⟩
Chapitre d'ouvrage hal-03065564 v1
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Ancestral Genome Organization as a Diagnosis Tool for Phylogenomics

Eric Tannier , Adelme Bazin , Adrián Davín , Laurent Guéguen , Sèverine Bérard et al.
Scornavacca, Celine; Delsuc, Frédéric; Galtier, Nicolas. Phylogenetics in the Genomic Era, No commercial publisher | Authors open access book, pp.2.5:1--2.5:19, 2020
Chapitre d'ouvrage hal-02535466 v1
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Comparative Methods for Reconstructing Ancient Genome Organization

Yoann Anselmetti , Nina Luhmann , Sèverine Bérard , Eric Tannier , Cedric Chauve
Comparative Genomics: Methods and Protocols, pp.343 - 362, 2017, ⟨10.1007/978-1-4939-7463-4_13⟩
Chapitre d'ouvrage hal-03192460 v1
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Ancestral Reconstruction: Theory and Practice

Mathieu Groussin , Vincent Daubin , Eric Tannier , Manolo Gouy
Richard M. Kliman. Encyclopedia of Evolutionary Biology, Elsevier, pp.70-77, 2016, ⟨10.1016/B978-0-12-800049-6.00166-9⟩
Chapitre d'ouvrage hal-01334934 v1

Sorting Signed Permutations by Reversal (Reversal Sequence)

Eric Tannier
Kao, Ming-Yang. Encyclopedia of Algorithms, Springer, pp.2028-2032, 2016, 978-1-4939-2863-7
Chapitre d'ouvrage hal-01334936 v1

Duplication, Rearrangement and Reconciliation: A Follow-Up 13 Years Later

Cedric Chauve , Nadia El-Mabrouk , Laurent Gueguen , Magali Semeria , Eric Tannier
Models and Algorithms for Genome Evolution, 19, Springer, pp.47-62, 2013, Series Computational Molecular Biology, 978-1-4471-5297-2
Chapitre d'ouvrage hal-00847155 v1
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Evolution Combinatoire, Algorithmique des Chromosomes

Eric Tannier
Bio-Informatique, Biologie Systémique [q-bio.QM]. Université Claude Bernard - Lyon I, 2011
HDR tel-00750199 v1

Comparative genomics : international workshop, RECOMB-CG 2010, Ottawa, Canada, October 9-11, 2010 : proceedings

Eric Tannier
Eric Tannier. International Workshop on Comparative Genomics, Oct 2010, Ottawa, Canada. Springer, 2010, Lecture notes in computer science, 978-3-642-16180-3
Proceedings/Recueil des communications hal-02091309 v1

RECOMB Satellite Workshop on Comparative Genomics

Eric Tannier
8. Annual RECOMB Satellite Workshop on Comparative Genomics, 2010, Ottawa, Canada. Springer, pp.303, 2010, 978-3-642-16181-0
Proceedings/Recueil des communications hal-00748561 v1