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Estelle Chaix

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An agent-based model to simulate SARS-CoV-2 contamination of surfaces and meat cuts in processing plants

Ngoc-Du Martin Luong , Laurent Guillier , Michel Federighi , Yvonnick Guillois , Pauline Kooh
International Journal of Food Microbiology, 2023, 404, pp.110321. ⟨10.1016/j.ijfoodmicro.2023.110321⟩
Journal articles anses-04169721v1
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Database of SARS-CoV-2 and coronaviruses kinetics relevant for assessing persistence in food processing plants

Ngoc-Du Martin Luong , Laurent Guillier , Sandra Martin-Latil , Christophe Batejat , India Leclercq
Scientific Data , 2022, 9 (1), pp.654. ⟨10.1038/s41597-022-01763-y⟩
Journal articles anses-03832274v1

Risk of Monkeypox virus (MPXV) transmission through the handling and consumption of food

Estelle Chaix , Mickaël Boni , Laurent Guillier , Stéphane Bertagnoli , Alexandra Mailles
Microbial Risk Analysis, 2022, 22, pp.100237. ⟨10.1016/j.mran.2022.100237⟩
Journal articles anses-03898801v1
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Guidance Level for Brevetoxins in French Shellfish

Nathalie Arnich , Eric Abadie , Zouher Amzil , Marie-Yasmine Dechraoui Bottein , Katia Comte
Marine drugs, 2021, 19 (9), pp.520. ⟨10.3390/md19090520⟩
Journal articles anses-03350437v1
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Modelling the inactivation of viruses from the Coronaviridae family in response to temperature and relative humidity in suspensions or surfaces.

Laurent Guillier , Sandra Martin-Latil , Estelle Chaix , Anne Thébault , Nicole Pavio
Applied and Environmental Microbiology, 2020, ⟨10.1128/AEM.01244-20⟩
Journal articles pasteur-02908234v1
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Text-mining tools for extracting information about microbial biodiversity in food

Estelle Chaix , Louise Deleger , Robert Bossy , Claire Nédellec
Food Microbiology, 2019, 81, pp.63-75. ⟨10.1016/j.fm.2018.04.011⟩
Journal articles hal-02628265v1

Performance of a non-invasive methodology for assessing oxygen diffusion in liquid and solid food products

Estelle Chaix , Carole Guillaume , Nathalie Gontard , Valérie Guillard
Journal of Food Engineering, 2016, 171, pp.87-94. ⟨10.1016/j.jfoodeng.2015.10.014⟩
Journal articles hal-01269384v1

Validation of a predictive model coupling gas transfer and microbial growth in fresh food packed under modified atmosphere

Valérie Guillard , Olivier Couvert , Valérie Stahl , Aurélie Hanin , Catherine Denis
Food Microbiology, 2016, 58, pp.43-55. ⟨10.1016/j.fm.2016.03.011⟩
Journal articles hal-01607135v1
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CO2 and O2 solubility and diffusivity data in food products stored in data warehouse structured by ontology

Valérie V. Guillard , Patrice Buche , Juliette Dibie-Barthelemy , Stéphane Dervaux , Filippo Acerbi
Data in Brief, 2016, 7, pp.1556-1559. ⟨10.1016/j.dib.2016.04.044⟩
Journal articles hal-01357730v1

Predictive microbiology coupled with gas (O2/CO2) transfer in food/packaging systems: how to develop an efficient decision support tool for food packaging dimensioning

Estelle Chaix , Olivier Couvert , Carole Guillaume , Nathalie N. Gontard , Valérie Guillard
Comprehensive Reviews in Food Science and Food Safety, 2015, 14 (1), pp.1-21. ⟨10.1111/1541-4337.12117⟩
Journal articles hal-02632580v1
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Conception assistée d’emballage sous atmosphère modifiée

Dominique Thuault , Estelle Chaix , Rim Touhami , Véronique Huchet , Patrice Buche
Industries Alimentaires et Agricoles, 2015, Dossier Emballage (sept-oct), pp.18-24
Journal articles hal-01231247v1

Mechanistic model coupling gas exchange dynamics and Listeria monocytogenes growth in modified atmosphere packaging of non respiring food

Estelle Chaix , Bertrand Broyart , O. Couvert , Carole Guillaume , Nathalie Gontard
Food Microbiology, 2015, 51, pp.192-205. ⟨10.1016/j.fm.2015.05.017⟩
Journal articles hal-01269206v1

Diffusivity and solubility of CO2 in dense solid food products

Estelle Chaix , Carole Guillaume , Nathalie Gontard , Valérie Guillard
Journal of Food Engineering, 2015, 166, pp.1-9. ⟨10.1016/j.jfoodeng.2015.05.023⟩
Journal articles hal-01269248v1

Oxygen and Carbon Dioxide Solubility and Diffusivity in Solid Food Matrices: A Review of Past and Current Knowledge

Estelle Chaix , Carole Guillaume , Valérie Guillard
Comprehensive Reviews in Food Science and Food Safety, 2014, 13 (3), pp.261 - 286. ⟨10.1111/1541-4337.12058⟩
Journal articles hal-01268528v1

Sale of food products without packaging: the consumer as a key player in food safety

Estelle Chaix , Nathalie Arnich , Bernard Caron , Catherine Chubilleau , Alain Gonthier
SafeConsume International Conference, Jun 2022, Bucharest, Romania
Conference papers hal-03719766v1

Bacteria Biotope at BioNLP Open Shared Tasks 2019

Robert Bossy , Louise Deleger , Estelle Chaix , Mouhamadou Ba , Claire Nédellec
5th Workshop on BioNLP Open Shared Tasks BioNLP-OST@EMNLP-IJCNLP 2019, Association for Computational Linguistics, Jin-Dong Kim; Claire Nédellec; Robert Bossy; Louise Deléger, Nov 2019, Hong-Kong, Hong Kong SAR China. ⟨10.18653/v1/D19-5719⟩
Conference papers hal-02437609v1
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L'ontologie OntoBiotope pour l'étude de la biodiversité microbienne

Claire Nédellec , Estelle Chaix , Robert Bossy , Louise Deleger , Sandra Derozier
EGC'2018: 18èmes Conférence Internationale sur l'Extraction et la Gestion des Connaissances, Jan 2018, Paris, France
Conference papers hal-02737399v1

Reconstruction and visualisation of gene regulatory networks from different provenances : application at Arabidopsis thaliana

Estelle Chaix , Robert Bossy , Claire Nédellec
BLAH4, Jan 2018, Tokyo, Japan. 2 p
Conference papers hal-02786388v1
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Text mining tools for extracting information about microbial biodiversity in food

Estelle Chaix , Louise Deleger , Robert Bossy , Claire Nédellec
Microbial Spoilers in Food 2017, Association pour le Développement de la Recherche Appliquée aux Industries Agricoles et Alimentaires (ADRIA). FRA., Jun 2017, Quimper, France. pp.95
Conference papers hal-01602552v1

Integration of Alvis within the OpenMinTeD platform as Galaxy utilities

Jean-Baptiste Bohuon , Mouhamadou Ba , Estelle Chaix , Robert Bossy , Claire Nédellec
Galaxy Community Conference, Jun 2017, Montpellier, France. pp.1, ⟨10.5281/zenodo.200370⟩
Conference papers hal-01556276v1
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Text-mining and ontologies: new approaches to knowledge discovery of microbial diversity

Claire Nédellec , Robert Bossy , Estelle Chaix , Louise Deleger
4th International Conference on Microbial Diversity 2017, Oct 2017, Bari, Italy
Conference papers hal-02736151v1
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Text-mining needs of the food microbiology research community

Estelle Chaix , Sophie Aubin , Louise Deleger , Claire Nédellec
2017 EFITA WCCA Congress, Jul 2017, Montpellier, France
Conference papers hal-01580677v1

Florilège: a database gathering microbial phenotypes of food interest

Hélène Falentin , Estelle Chaix , Bedis Dridi , Philippe Bessieres , S Buchin
2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France
Conference papers hal-01607327v1
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OntoBiotope: une ontologie pour croiser les habitats microbiens avec les analyses de génomes.

Robert Bossy , Estelle Chaix , Louise Deleger , Arnaud Ferré , Mouhamadou Ba
Les journées Bioinformatique de l'Inra, Mar 2016, Montpellier, France. pp.1
Conference papers hal-01455856v1
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Overview of the regulatory network of plant seed development (SeeDev) task at the BioNLP shared task 2016

Estelle Chaix , Bertrand Dubreucq , Abdelhak Fatihi , Dialekti Valsamou , Robert Bossy
BioNLP Shared Task, Aug 2016, Berlin, Germany. pp.113
Conference papers hal-01455854v1

Shared Task SeeDev : Extraction de régulations impliquées dans le développement de la graine d’Arabidopsis thaliana à partir de publications scientifiques

Estelle Chaix , Bertrand Dubreucq , Dialekti Valsamou , Abdelhak Fatihi , Louise Deleger
Les journées Bioinformatique de l'Inra, Mar 2016, Montpellier, France. pp.1
Conference papers hal-01455855v1

Overview of the bacteria biotope task at BioNLP shared task

Louise Deleger , Robert Bossy , Estelle Chaix , Mouhamadou Ba , Arnaud Ferré
BioNLP Shared Task, Aug 2016, Berlin, Germany. pp.101
Conference papers hal-01455857v1

Information extraction from articles for the elaboration of the regulatory networks involved in Arabidopsis seed development

Bertrand Dubreucq , Dialekti Valsamou , Abdelhak Fatihi , Estelle Chaix , Robert Bossy
26th International Conference on Arabidopsis Research, Jul 2015, Paris, France
Conference papers hal-01524850v1
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Knowledge model of regulatory networks involved in Arabidopsis seed development for information extraction and integration from text

Estelle Chaix , Bertrand Dubreucq , Dialekti Valsamou , Abdelhak Fatihi , Robert Bossy
BioCreative 5, Sep 2015, Madrid, Spain
Conference papers hal-01512197v1

Information extraction challenge Gene Regulation Network in Arabidopsis thaliana (GRNA)

Estelle Chaix , Bertrand Dubreucq , Dialekti Valsamou , Abdelhak Fatihi , Robert Bossy
Paris-Saclay Center for Data Science: Open Software Initiative (OSI), Oct 2015, Orsay, France. pp.14 slides, ⟨10.13140/RG.2.1.4286.6326⟩
Conference papers hal-01603453v1
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Les gaz et l'aliment. Les éléments déterminant de l'efficacité des gaz vis-à-vis des microorganismes

Estelle Chaix
Efficacité des atmosphères modifiées sur la qualité microbiologique des aliments, Association pour le Développement de la Recherche Appliquée aux Industries Agricoles et Alimentaires (ADRIA). FRA., Sep 2015, Saint Pierre de Quiberon, France
Conference papers hal-01603755v1
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CO2 kinetics in cheese matrix at 20°C position from interface (mm) A new methodology to monitor CO 2 transfer and determine its diffusivity and solubility in solid food

Estelle Chaix , Valérie Guillard
2012 EFFoST Annual Meeting - A Lunch Box for Tomorrow : An interactive combination of integrated analysis and specialized knowledge of food, Nov 2012, Montpellier, France. pp.1
Conference papers hal-01601871v1
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Evaluation of O2 transfer in the food/packaging system for a better shelf life evaluation of modified atmosphere food packaging.

Estelle Chaix , Valérie Guillard
2012 EFFoST Annual Meeting - A Lunch Box for Tomorrow : An interactive combination of integrated analysis and specialized knowledge of food, Nov 2012, Montpellier, France. pp.2
Conference papers hal-01601670v1

Project SACADA: SARS-CoV-2 transmission in meat processing plants

Estelle Chaix , Christophe Batéjat , G. Boué , S. Duret , Michel Federighi
FoodMicro2022, Aug 2022, Athene, Greece.
Conference poster anses-03903141v1
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Omnicrobe : une base de données d’habitats et de phénotypes microbiens

Hélène Falentin , Olivier Harlé , Sandra Derozier , Louise Deléger , Estelle Chaix
23ème édition du colloque du Club des Bactéries Lactiques, Jun 2022, Rennes, France. , 2022
Conference poster hal-03694214v1

An agent-based model to predict SARS-CoV-2 contamination of surfaces and meat cuts in processing plants

Ngoc-Du Martin Luong , Laurent Guillier , Estelle Chaix , Michel Federighi , Pauline Kooh
FoodMicro2022, Aug 2022, Athene, Greece.
Conference poster anses-03903173v1
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Florilege, a database gathering microbial habitats, phenotypes and uses

Sandra Derozier , Louise Deleger , Estelle Chaix , Reda Mekdad , Mouhamadou Ba
JOBIM 2020, Jun 2020, Montpellier, France
Conference poster hal-02904156v1
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FLORILEGE: an integrative database using text mining and ontologies

Estelle Chaix , Sandra Derozier , Louise Deleger , Hélène Falentin , Jean-Baptiste Bohuon
JOBIM 2018, Jul 2018, Marseille, France. , 2018, ABSTRACTS JOBIM 2018
Conference poster hal-01827946v1
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Florilege : a database gathering microbial phenotypes of food interest

Hélène Falentin , Estelle Chaix , Bedis Dridi , Philippe Bessieres , S Buchin
4th International Conference on Microbial Diversity 2017, Oct 2017, Bari, Italy. , 2017
Conference poster hal-01651302v1
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A decision support tool to predict mass transfer and microorganism growth in modified atmosphere packagingof fresh food products

Estelle Chaix , Bertrand Broyart , Carole Guillaume , Olivier Couvert , Valérie Guillard
2012 EFFoST Annual Meeting - A Lunch Box for Tomorrow : An interactive combination of integrated analysis and specialized knowledge of food, Nov 2012, Montpellier, France. 2012
Conference poster hal-01628134v1