Estelle Chaix
Publications
Publications
MPV : Réservoirs animaux, risques de transmission aux animaux autochtones hors d’Afrique42ème réunion interdisciplinaire de Chimiothérapie anti-infectieuse (RICAI), ACAI, Dec 2022, Paris Palais des congrès, France |
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Sale of food products without packaging: the consumer as a key player in food safetySafeConsume International Conference, Jun 2022, Bucharest, Romania |
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Bacteria Biotope at BioNLP Open Shared Tasks 20195th Workshop on BioNLP Open Shared Tasks BioNLP-OST@EMNLP-IJCNLP 2019, Association for Computational Linguistics, Jin-Dong Kim; Claire Nédellec; Robert Bossy; Louise Deléger, Nov 2019, Hong-Kong, Hong Kong SAR China. ⟨10.18653/v1/D19-5719⟩ |
Reconstruction and visualisation of gene regulatory networks from different provenances : application at Arabidopsis thalianaBLAH4, Jan 2018, Tokyo, Japan. 2 p |
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L'ontologie OntoBiotope pour l'étude de la biodiversité microbienneEGC'2018: 18èmes Conférence Internationale sur l'Extraction et la Gestion des Connaissances, Jan 2018, Paris, France |
A text mining approach to enhance knowledge of food microorganismsNext Generation Challenges in Food Microbiology, FoodMicro, Aug 2018, Athens, Greece |
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Recovering the complexity in scientific knowledge: towards automatically reconstructing the maize floral transition gene regulatory networkInternational Conférence on Ecological Science, Oct 2018, Paris, France |
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Florilège: a database gathering microbial phenotypes of food interest2017 Scientific MEM days: Journées scientifiques MEM (Métaomiques et écosystèmes microbiens), Jan 2017, Paris, France |
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Integration of Alvis within the OpenMinTeD platform as Galaxy utilitiesGalaxy Community Conference, Jun 2017, Montpellier, France. pp.1, ⟨10.5281/zenodo.200370⟩ |
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Text-mining and ontologies: new approaches to knowledge discovery of microbial diversity4th International Conference on Microbial Diversity 2017, Oct 2017, Bari, Italy |
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Text-mining needs of the food microbiology research community2017 EFITA WCCA Congress, Jul 2017, Montpellier, France |
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Text mining tools for extracting information about microbial biodiversity in foodMicrobial Spoilers in Food 2017, Association pour le Développement de la Recherche Appliquée aux Industries Agricoles et Alimentaires (ADRIA). FRA., Jun 2017, Quimper, France. pp.95 |
Overview of the bacteria biotope task at BioNLP shared taskBioNLP Shared Task, Aug 2016, Berlin, Germany. pp.101 |
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Shared Task SeeDev : Extraction de régulations impliquées dans le développement de la graine d’Arabidopsis thaliana à partir de publications scientifiquesLes journées Bioinformatique de l'Inra, Mar 2016, Montpellier, France. pp.1 |
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OntoBiotope: une ontologie pour croiser les habitats microbiens avec les analyses de génomes.Les journées Bioinformatique de l'Inra, Mar 2016, Montpellier, France. pp.1 |
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Overview of the regulatory network of plant seed development (SeeDev) task at the BioNLP shared task 2016BioNLP Shared Task, Aug 2016, Berlin, Germany. pp.113 |
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Knowledge model of regulatory networks involved in Arabidopsis seed development for information extraction and integration from textBioCreative 5, Sep 2015, Madrid, Spain |
Information extraction from articles for the elaboration of the regulatory networks involved in Arabidopsis seed development26th International Conference on Arabidopsis Research, Jul 2015, Paris, France |
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Information extraction challenge Gene Regulation Network in Arabidopsis thaliana (GRNA)Paris-Saclay Center for Data Science: Open Software Initiative (OSI), Oct 2015, Orsay, France. pp.14 slides, ⟨10.13140/RG.2.1.4286.6326⟩ |
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Les gaz et l'aliment. Les éléments déterminant de l'efficacité des gaz vis-à-vis des microorganismesEfficacité des atmosphères modifiées sur la qualité microbiologique des aliments, Association pour le Développement de la Recherche Appliquée aux Industries Agricoles et Alimentaires (ADRIA). FRA., Sep 2015, Saint Pierre de Quiberon, France |
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CO2 kinetics in cheese matrix at 20°C position from interface (mm) A new methodology to monitor CO 2 transfer and determine its diffusivity and solubility in solid food2012 EFFoST Annual Meeting - A Lunch Box for Tomorrow : An interactive combination of integrated analysis and specialized knowledge of food, Nov 2012, Montpellier, France. pp.1 |
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Evaluation of O2 transfer in the food/packaging system for a better shelf life evaluation of modified atmosphere food packaging.2012 EFFoST Annual Meeting - A Lunch Box for Tomorrow : An interactive combination of integrated analysis and specialized knowledge of food, Nov 2012, Montpellier, France. pp.2 |
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Bacteria biotope annotation guidelines2019, 30 p |
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Overview of the Regulatory Network of Plant Seed Development (SeeDev) Task at the BioNLP Shared Task 2016.2016, pp.1-11. ⟨10.18653/v1/W16-3001⟩ |
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Annotation Guidelines BIONLP-ST 2016 SeeDev task2016, pp.47 |
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Omnicrobe, an open-access database of microbial habitats and phenotypes using a comprehensive text mining and data fusion approach2022 |
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Dérèglement climatique et pratiques alimentaires : explorer les tendances émergentes pour anticiper les enjeux sanitaires associésCongrès SFSE 2025, Nov 2025, Montpellier, France. |
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SafeFood4ClimDiet : dérèglement climatique, nouvelles pratiques alimentaires et émergence de risques microbiologiquesMicrobes 2025, Sep 2025, Bordeaux, France. 20e congrès national de la Société Française de Microbiologie - du 24 au 26 septembre 2025 - Palais des Congrès de Bordeaux, France - Livre des résumés, pp.Page 336 |
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Risque de transmission du virus Monkeypox par la manipulation et la consommation d'alimentsJohn Libbey Eurotext. XXVIes Journées francophones de virologie, Apr 2024, Bruxelles, Belgique. , Virologie, 28 (2), 2024 |
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Une base de données pour évaluer la persistance du SARS-CoV-2 dans les ateliers de transformation des alimentsJohn Libbey Eurotext. XXVIes Journées francophones de virologie, Apr 2024, Bruxelles, Belgique. , Virologie, 28 (2), 2024 |
Pathobiome analyses in vegetable food products12th International Congress of Plant Pathology, Aug 2023, LYON, France. , Poster |
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Omnicrobe : une base de données d’habitats et de phénotypes microbiens23ème édition du colloque du Club des Bactéries Lactiques, Jun 2022, Rennes, France. , 2022 |
An agent-based model to predict SARS-CoV-2 contamination of surfaces and meat cuts in processing plantsFoodMicro2022, Aug 2022, Athene, Greece. |
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Omnicrobe, an open-access database of microbial habitats, phenotypes and uses extracted from textJOBIM 2022, Jul 2022, Rennes, France. , Proceedings Posters Demos, pp.42 |
Project SACADA: SARS-CoV-2 transmission in meat processing plantsFoodMicro2022, Aug 2022, Athene, Greece. |
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Florilege, a database gathering microbial habitats, phenotypes and usesJOBIM 2020, Jun 2020, Montpellier, France |
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FLORILEGE: an integrative database using text mining and ontologiesJOBIM 2018, Jul 2018, Marseille, France. , 2018, ABSTRACTS JOBIM 2018 |
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Florilege : a database gathering microbial phenotypes of food interest4. International Conference on Microbial Diversity 2017, Oct 2017, Bari, Italy. , 2017 |
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A decision support tool to predict mass transfer and microorganism growth in modified atmosphere packagingof fresh food products2012 EFFoST Annual Meeting - A Lunch Box for Tomorrow : An interactive combination of integrated analysis and specialized knowledge of food, Nov 2012, Montpellier, France. 2012 |
Caractérisation et modélisation des transferts de gaz (O2 /CO2) dans le système emballage/aliment en lien avec les réactions de croissance microbienne (microbiologie prévisionnelle)Chemical and Process Engineering. Université Montpellier 2 (Sciences et Techniques), 2014. English. ⟨NNT : ⟩ |