fabien lombard

Associate Professor Sorbonne Université Laboratoire d'Océanographie de Villefranche sur Mer
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137
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Affiliation actuelle
  • Laboratoire d'océanographie de Villefranche (LOV)
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Publications

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Pathways for converting zooplankton traits to ecological insights are paved with findable, accessible, interoperable, and reusable (FAIR) data practices

Jessica Titocci , Patrick Pata , Tiziana Durazzano , Sakina-Dorothée Ayata , Corentin Clerc et al.
ICES Journal of Marine Science, 2025, 82 (2), ⟨10.1093/icesjms/fsaf017⟩
Article dans une revue hal-05037181 v1
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Sea surface temperature reconstruction in the Pacific Ocean using multi-elemental proxy in Porites and Diploastrea corals: Application to Palau Archipelago

Marine Canesi , Éric Douville , Paolo Montagna , Louise Bordier , Sandrine Caquineau et al.
Chemical Geology, 2024, 645, pp.121884. ⟨10.1016/j.chemgeo.2023.121884⟩
Article dans une revue hal-04337163 v1
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First release of the Pelagic Size Structure database: global datasets of marine size spectra obtained from plankton imaging devices

Mathilde Dugenne , Marco Corrales-Ugalde , Jessica Luo , Rainer Kiko , Todd O'Brien et al.
Earth System Science Data, 2024, 16 (6), pp.2971-2999. ⟨10.5194/essd-16-2971-2024⟩
Article dans une revue hal-04648046 v1

Combining in situ and ex situ plankton image data to reconstruct zooplankton (>1 mm) volume and mass distribution in the global ocean

Yawouvi Dodji Soviadan , Mathilde Dugenne , Laetitia Drago , Tristan Biard , Emilia Trudnowska et al.
Journal of Plankton Research, 2024, 46 (5), pp.461-474. ⟨10.1093/plankt/fbae046⟩
Article dans une revue hal-04777755 v1
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Multi-omics determination of metabolome diversity in natural coral populations in the Pacific Ocean

Maggie M Reddy , Corentine Goossens , Yuxiang Zhou , Slimane Chaib , Delphine Raviglione et al.
Communications Earth & Environment, 2023, 4 (1), pp.281. ⟨10.1038/s43247-023-00942-y⟩
Article dans une revue hal-04184949 v1
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Pervasive tandem duplications and convergent evolution shape coral genomes

Benjamin Noel , France Denoeud , Alice Rouan , Carol Buitrago-López , Laura Capasso et al.
Genome Biology, 2023, 24 (1), pp.123. ⟨10.1186/s13059-023-02960-7⟩
Article dans une revue hal-04117388 v1
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Host transcriptomic plasticity and photosymbiotic fidelity underpin $Pocillopora$ acclimatization across thermal regimes in the Pacific Ocean

Eric J Armstrong , Julie Lê-Hoang , Quentin Carradec , Jean-Marc Aury , Benjamin Noel et al.
Nature Communications, 2023, 14, pp.3056. ⟨10.1038/s41467-023-38610-6⟩
Article dans une revue cea-04171796 v1
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Editorial: Technological advances for measuring planktonic components of the pelagic ecosystem: An integrated approach to data collection and analysis

Sophie G. Pitois , Elaine S. Fileman , Mark C. Benfield , Peter H. Wiebe , Fabien Lombard
Frontiers in Marine Science, 2023, 10, ⟨10.3389/fmars.2023.1100998⟩
Article dans une revue hal-04020892 v1
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Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals

Alice Rouan , Mélanie Pousse , Nadir Djerbi , Barbara Porro , Guillaume Bourdin et al.
Nature Communications, 2023, 14 (1), pp.3038. ⟨10.1038/s41467-023-38499-1⟩
Article dans une revue cea-04171809 v1
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Monitoring and modelling marine zooplankton in a changing climate

Lavenia Ratnarajah , Rana Abu-Alhaija , Angus Atkinson , Sonia Batten , Nicholas J. Bax et al.
Nature Communications, 2023, 14 (1), pp.564. ⟨10.1038/s41467-023-36241-5⟩
Article dans une revue hal-04020893 v1
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Gelatinous larvacean zooplankton can enhance trophic transfer and carbon sequestration

Cornelia Jaspers , Russell Hopcroft , Thomas Kiørboe , Fabien Lombard , Ángel López-Urrutia et al.
Trends in Ecology & Evolution, 2023, 38 (10), pp.980-993. ⟨10.1016/j.tree.2023.05.005⟩
Article dans une revue hal-04660289 v1
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Diversity of the Pacific Ocean coral reef microbiome

Pierre Galand , Hans-Joachim Ruscheweyh , Guillem Salazar , Corentin Hochart , Nicolas Henry et al.
Nature Communications, 2023, 14 (1), pp.3039. ⟨10.1038/s41467-023-38500-x⟩
Article dans une revue hal-04176291 v1
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Endogenous viral elements reveal associations between a non-retroviral RNA virus and symbiotic dinoflagellate genomes

Alex Veglia , Kalia Bistolas , Christian Voolstra , Benjamin Hume , Hans-Joachim Ruscheweyh et al.
Communications Biology, 2023, 6 (1), pp.566. ⟨10.1038/s42003-023-04917-9⟩
Article dans une revue hal-04176296 v2
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Integrative omics framework for characterization of coral reef ecosystems from the Tara Pacific expedition

Caroline Belser , Julie Poulain , Karine Labadie , Frederick Gavory , Adriana Alberti et al.
Scientific Data , 2023, 10 (1), pp.326. ⟨10.1038/s41597-023-02204-0⟩
Article dans une revue hal-04176297 v3

Differential clearance rates of microbial phylotypes by four appendicularian species

A Dadon-Pilosof , Conley K , Fabien Lombard , Sutherland Kr , Genin A et al.
Marine Ecology Progress Series, 2023, 706, pp.73--89. ⟨10.3354/meps14233⟩
Article dans une revue hal-04021214 v1

Mistaking plastic for zooplankton: Risk assessment of plastic ingestion in the Mediterranean sea

S. Fabri-Ruiz , A. Baudena , F. Moullec , F. Lombard , J.-O. Irisson et al.
Science of the Total Environment, 2023, 856 (Part 2), pp.159011. ⟨10.1016/j.scitotenv.2022.159011⟩
Article dans une revue hal-03959364 v1
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Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

Fabien Lombard , Guillaume Bourdin , Stéphane Pesant , Sylvain Agostini , Alberto Baudena et al.
Scientific Data , 2023, 10 (1), pp.324. ⟨10.1038/s41597-022-01757-w⟩
Article dans une revue hal-04164118 v1
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Ocean-wide comparisons of mesopelagic planktonic community structures

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Pierella Karlusich et al.
ISME Communications, 2023, 3 (1), pp.83. ⟨10.1038/s43705-023-00279-9⟩
Article dans une revue hal-04184772 v1
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Differences in carbonate chemistry up-regulation of long-lived reef-building corals

Marine Canesi , Éric Douville , Paolo Montagna , Marco Taviani , Jarosław Stolarski et al.
Scientific Reports, 2023, 13 (1), pp.11589. ⟨10.1038/s41598-023-37598-9⟩
Article dans une revue cea-04170119 v1
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Different environmental response strategies in sympatric corals from Pacific Islands

Barbara Porro , Thamilla Zamoum , Didier Forcioli , Eric Gilson , Adrien Poquet et al.
Communications Earth & Environment, 2023, 4 (1), pp.311. ⟨10.1038/s43247-023-00946-8⟩
Article dans une revue hal-04205154 v1
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Ecology of Endozoicomonadaceae in three coral genera across the Pacific Ocean

Corentin Hochart , Lucas Paoli , Hans-Joachim Ruscheweyh , Guillem Salazar , Emilie Boissin et al.
Nature Communications, 2023, 14 (1), pp.3037. ⟨10.1038/s41467-023-38502-9⟩
Article dans une revue hal-04176293 v1
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Functional responses of aggregate‐colonizing copepods

Marja Koski , Fabien Lombard
Limnology and Oceanography, 2022, 67 (9), pp.2059-2072. ⟨10.1002/lno.12187⟩
Article dans une revue hal-03957133 v1
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Basin-Scale Underway Quantitative Survey of Surface Microplankton Using Affordable Collection and Imaging Tools Deployed From Tara

Zoé Mériguet , Anna Oddone , David Le Guen , Thibaut Pollina , Romain Bazile et al.
Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.916025⟩
Article dans une revue hal-03877194 v1
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Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

Tristan Cordier , Inès Barrenechea Angeles , Nicolas Henry , Franck Lejzerowicz , Cédric Berney et al.
Science Advances , 2022, 8 (5), ⟨10.1126/sciadv.abj9309⟩
Article dans une revue hal-03561462 v1
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Planktoscope protocol for plankton imaging

Fabien Lombard
Article dans une revue hal-04020900 v1
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Establishing Plankton Imagery Dataflows Towards International Biodiversity Data Aggregators

Patricia Martin-Cabrera , Ruben Perez Perez , Jean-Olivier Irrison , Fabien Lombard , Klas Ove Möller et al.
Biodiversity Information Science and Standards, 2022, 6, ⟨10.3897/biss.6.94196⟩
Article dans une revue hal-03958791 v1
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Plankton Planet: A frugal, cooperative measure of aquatic life at the planetary scale

Colomban de Vargas , Noan Le Bescot , Thibaut Pollina , Nicolas Henry , Sarah Romac et al.
Frontiers in Marine Science, 2022, 9, pp.936972. ⟨10.3389/fmars.2022.936972⟩
Article dans une revue hal-03788523 v1
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Siliceous Rhizaria abundances and diversity in the Mediterranean Sea assessed by combined imaging and metabarcoding approaches

Natalia Llopis Monferrer , Tristan Biard , Miguel Sandin , Fabien Lombard , Marc Picheral et al.
Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.895995⟩
Article dans une revue hal-03847226 v1
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Global Distribution of Zooplankton Biomass Estimated by In Situ Imaging and Machine Learning

Laetitia Drago , Thelma Panaïotis , Jean-Olivier Irisson , Marcel Babin , Tristan Biard et al.
Frontiers in Marine Science, 2022, 9, pp.894372. ⟨10.3389/fmars.2022.894372⟩
Article dans une revue hal-03810062 v1
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An integrative assessment of the plastic debris load in the Mediterranean Sea

M.L. Pedrotti , Fabien Lombard , Alberto Baudena , François Galgani , Amanda Elineau et al.
Science of the Total Environment, 2022, 838, Part 1, pp.155958. ⟨10.1016/j.scitotenv.2022.155958⟩
Article dans une revue hal-03712132 v1
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Patterns of mesozooplankton community composition and vertical fluxes in the global ocean

Yawouvi Dodji Soviadan , Fabio Benedetti , Manoela Brandão , Sakina-Dorothée Ayata , Jean-Olivier Irisson et al.
Progress in Oceanography, 2022, pp.102717. ⟨10.1016/j.pocean.2021.102717⟩
Article dans une revue hal-03449715 v1
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PlanktoScope: Affordable Modular Quantitative Imaging Platform for Citizen Oceanography

Thibaut Pollina , Adam Larson , Fabien Lombard , Hongquan Li , David Le Guen et al.
Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.949428⟩
Article dans une revue hal-03971225 v1
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A robust approach to estimate relative phytoplankton cell abundances from metagenomes

Juan José Pierella Karlusich , Eric Pelletier , Lucie Zinger , Fabien Lombard , Adriana Zingone et al.
Molecular Ecology Resources, 2022, 23 (1), pp.16-40. ⟨10.1111/1755-0998.13592⟩
Article dans une revue hal-03559541 v1
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Coupling Imaging and Omics in Plankton Surveys: State-of-the-Art, Challenges, and Future Directions

Juan José Pierella Karlusich , Fabien Lombard , Jean-Olivier Irisson , Chris Bowler , Rachel Foster
Frontiers in Marine Science, 2022, 9, ⟨10.3389/fmars.2022.878803⟩
Article dans une revue hal-03956267 v1
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Priorities for ocean microbiome research

Andre Abreu , Etienne Bourgois , Adam Gristwood , Romain Troublé , Silvia Acinas et al.
Nature Microbiology, 2022, 7 (7), pp.937-947. ⟨10.1038/s41564-022-01145-5⟩
Article dans une revue hal-03781942 v1
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A global marine particle size distribution dataset obtained with the Underwater Vision Profiler 5

Rainer Kiko , Marc Picheral , David Antoine , Marcel Babin , Léo Berline et al.
Earth System Science Data, 2022, 14 (9), pp.4315-4337. ⟨10.5194/essd-14-4315-2022⟩
Article dans une revue hal-03794258 v1
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Genomic differentiation of three pico‐phytoplankton species in the Mediterranean Sea

Ophélie da Silva , Sakina-Dorothée Ayata , Enrico Ser-Giacomi , Jade Leconte , Eric Pelletier et al.
Environmental Microbiology, 2022, 24 (12), pp.6086-6099. ⟨10.1111/1462-2920.16171⟩
Article dans une revue hal-03784277 v1
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The Underwater Vision Profiler 6: an imaging sensor of particle size spectra and plankton, for autonomous and cabled platforms

Marc Picheral , Camille Catalano , Denis Brousseau , Hervé Claustre , Laurent Coppola et al.
Limnology and Oceanography: Methods, 2022, ⟨10.1002/lom3.10475⟩
Article dans une revue hal-03508179 v1
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Machine learning techniques to characterize functional traits of plankton from image data

Eric C. Orenstein , Sakina-Dorothée Ayata , Frédéric Maps , Érica C. Becker , Fabio Benedetti et al.
Limnology and Oceanography, 2022, 67 (8), pp.1647-1669. ⟨10.1002/lno.12101⟩
Article dans une revue hal-03482282 v2
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Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods

Juan José Pierella Karlusich , Eric Pelletier , Fabien Lombard , Madeline Carsique , Etienne Dvorak et al.
Nature Communications, 2021, 12, pp.4160. ⟨10.1038/s41467-021-24299-y⟩
Article dans une revue hal-03334117 v2
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Invasion genomics uncover contrasting scenarios of genetic diversity in a widespread marine invader

Cornelia Jaspers , Moritz Ehrlich , José Martin Pujolar , Sven Künzel , Till Bayer et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (51), pp.e2116211118. ⟨10.1073/pnas.2116211118⟩
Article dans une revue hal-03531081 v1
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Macroscale patterns of oceanic zooplankton composition and size structure

Manoela Brandão , Fabio Benedetti , Séverine Martini , Yawouvi Dodji Soviadan , Jean-Olivier Irisson et al.
Scientific Reports, 2021, 11 (1), pp.15714. ⟨10.1038/s41598-021-94615-5⟩
Article dans une revue hal-03318806 v1
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Enhanced monitoring of life in the sea is a critical component of conservation management and sustainable economic growth

Maurice Estes , Clarissa Anderson , Ward Appeltans , Nic Bax , Nina Bednaršek et al.
Marine Policy, 2021, 132, pp.104699. ⟨10.1016/j.marpol.2021.104699⟩
Article dans une revue hal-03406870 v1
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Functional trait-based approaches as a common framework for aquatic ecologists

Severine Martini , Floriane Larras , Aurélien Boyé , Emile Faure , Nicole Aberle et al.
Limnology and Oceanography, 2021, 66 (3), pp.965-994. ⟨10.1002/lno.11655⟩
Article dans une revue hal-02996072 v1
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Diel cycle of sea spray aerosol concentration

J. Michel Flores , Guillaume Bourdin , Alexander Kostinski , Orit Altaratz , Guy Dagan et al.
Nature Communications, 2021, 12 (1), ⟨10.1038/s41467-021-25579-3⟩
Article dans une revue hal-03350257 v1
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Probabilistic modeling to estimate jellyfish ecophysiological properties and size distributions

Simon Ramondenc , Damien Eveillard , Lionel Guidi , Fabien Lombard , Benoit Delahaye
Scientific Reports, 2020, 10 (1), ⟨10.1038/s41598-020-62357-5⟩
Article dans une revue hal-02539195 v1
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Tara Pacific Expedition’s Atmospheric Measurements of Marine Aerosols across the Atlantic and Pacific Oceans: Overview and Preliminary Results

J. Flores , G. Bourdin , O. Altaratz , M. Trainic , N. Lang-Yona et al.
Bulletin of the American Meteorological Society, 2020, 101 (5), pp.E536-E554. ⟨10.1175/BAMS-D-18-0224.1⟩
Article dans une revue hal-02967981 v1

Tara Oceans: towards global ocean ecosystems biology

Shinichi Sunagawa , Silvia Acinas , Peer Bork , Chris Bowler , Silvia Acinas et al.
Nature Reviews Microbiology, 2020, 18 (8), pp.428-445. ⟨10.1038/s41579-020-0364-5⟩
Article dans une revue hal-04394809 v1
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Airborne microplastic particles detected in the remote marine atmosphere

Miri Trainic , J Michel Flores , Iddo Pinkas , Maria Luiza Pedrotti , Fabien Lombard et al.
Communications Earth & Environment, 2020, 1, ⟨10.1038/s43247-020-00061-y⟩
Article dans une revue hal-03434730 v1
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Expanding Tara Oceans Protocols for Underway, Ecosystemic Sampling of the Ocean-Atmosphere Interface During Tara Pacific Expedition (2016–2018)

Gabriel Gorsky , Guillaume Bourdin , Fabien Lombard , Maria Luiza Pedrotti , Samuel Audrain et al.
Frontiers in Marine Science, 2019, 6, pp.650. ⟨10.3389/fmars.2019.00750⟩
Article dans une revue hal-02407578 v1
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The Tara Pacific expedition-A pan-ecosystemic approach of the "-omics" complexity of coral reef holobionts across the Pacific Ocean

Serge Planes , Denis Allemand , Sylvain Agostini , Bernard Banaigs , Emilie Boissin et al.
PLoS Biology, 2019, 17 (9), pp.e3000483. ⟨10.1371/journal.pbio.3000483⟩
Article dans une revue hal-02402685 v1
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Prey taxonomy rather than size determines salp diets

Ayelet Dadon-Pilosof , Fabien Lombard , Amatzia Genin , Kelly R Sutherland , Gitai Yahel
Limnology and Oceanography, 2019, 64 (5), pp.1996-2010. ⟨10.1002/lno.11165⟩
Article dans une revue hal-02302266 v1

From egg to maturity: a closed system for complete life cycle studies of the holopelagic jellyfish Pelagia noctiluca

Simon Ramondenc , Mathilde Ferrieux , Sophie Collet , Fabio Benedetti , Lionel Guidi et al.
Journal of Plankton Research, 2019, 41 (3), pp.207-217. ⟨10.1093/plankt/fbz013⟩
Article dans une revue hal-02386811 v1
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The Seasonal and Inter-Annual Fluctuations of Plankton Abundance and Community Structure in a North Atlantic Marine Protected Area

Fabio Benedetti , Laëtitia Jalabert , Marc Sourisseau , Beatriz Becker , Caroline Cailliau et al.
Frontiers in Marine Science, 2019, 6, pp.214. ⟨10.3389/fmars.2019.00214⟩
Article dans une revue hal-02125435 v1

Microplastic Ingestion by Gelatinous Zooplankton May Lower Efficiency of the Biological Pump

Alina Wieczorek , Peter Croot , Fabien Lombard , Jerome Sheahan , Thomas Doyle
Environmental Science and Technology, 2019, 53 (9), pp.5387-5395. ⟨10.1021/acs.est.8b07174⟩
Article dans une revue hal-03955946 v1
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Globally Consistent Quantitative Observations of Planktonic Ecosystems

Fabien Lombard , Emmanuel Boss , Anya M Waite , Meike Vogt , Julia Uitz et al.
Frontiers in Marine Science, 2019, 6, pp.Article 196. ⟨10.3389/fmars.2019.00196⟩
Article dans une revue hal-02325576 v1

Are tropical coastal reefs sinks or sources of mesozooplankton? A case study in a Brazilian marine protected area

Gleice S. Santos , Lars Stemmann , Fabien Lombard , Ralf Schwamborn
Coral Reefs, 2019, 38, pp.1107-1120. ⟨10.1007/s00338-019-01860-2⟩
Article dans une revue insu-03661728 v1
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Global Trends in Marine Plankton Diversity across Kingdoms of Life

Federico Ibarbalz , Nicolas Henry , Manoela Brandão , Severine Martini , Greta Busseni et al.
Cell, 2019, 179 (5), pp.1084-1097.e21. ⟨10.1016/j.cell.2019.10.008⟩
Article dans une revue hal-03094778 v1
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Community‐Level Responses to Iron Availability in Open Ocean Plankton Ecosystems

Luigi Caputi , Quentin Carradec , Damien Eveillard , Amos Kirilovsky , Eric Pelletier et al.
Global Biogeochemical Cycles, 2019, 33 (3), pp.391-419. ⟨10.1029/2018GB006022⟩
Article dans une revue hal-02999805 v1
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Eukaryotic and cyanobacterial communities associated with marine snow particles in the oligotrophic Sargasso Sea

Regitze B C Lundgreen , Cornelia Jaspers , Sachia J Traving , Daniel J Ayala , Fabien Lombard et al.
Scientific Reports, 2019, 9, pp.8891. ⟨10.1038/s41598-019-45146-7⟩
Article dans une revue hal-02183469 v1

Patterns of invasive ctenophore Mnemiopsis leidyi distribution and variability in different recipient environments of the Eurasian seas: A review

T. A. Shiganova , U. Sommer , J. Javidpour , J. C. Molinero , A. Malej et al.
Marine Environmental Research, 2019, pp.104791. ⟨10.1016/j.marenvres.2019.104791⟩
Article dans une revue hal-02439853 v1

Into the bloom: Molecular response of pelagic tunicates to fluctuating food availability

Paolo Sordino , Salvatore d'Aniello , Eric Pelletier , Patrick Wincker , Valeria Nittoli et al.
Molecular Ecology, 2019, 29 (2), pp.292-307. ⟨10.1111/mec.15321⟩
Article dans une revue hal-03955981 v1
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Jellyfish blooms: advances and challenges

Veronica L. Fuentes , Jennifer E. Purcell , Robert H. Condon , Fabien Lombard , Cathy H. Lucas
Marine Ecology Progress Series, 2018, 591, pp.3-5. ⟨10.3354/meps12536⟩
Article dans une revue hal-03505067 v1
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Symbiont Chloroplasts Remain Active During Bleaching-Like Response Induced by Thermal Stress in Collozoum pelagicum (Collodaria, Retaria)

Emilie Villar , Vincent Dani , Estelle Bigeard , Tatiana Linhart , Miguel Mendez-Sandin et al.
Frontiers in Marine Science, 2018, 5, pp.387. ⟨10.3389/fmars.2018.00387⟩
Article dans une revue hal-02046464 v1
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Diazotrophic Trichodesmium impact on UV–Vis radiance and pigment composition in the western tropical South Pacific

Cecile Dupouy , Robert Frouin , Marc Tedetti , Morgane Maillard , Martine Rodier et al.
Biogeosciences, 2018, 15 (16), pp.5249-5269. ⟨10.5194/bg-15-5249-2018⟩
Article dans une revue hal-01864724 v1

Pediatric angiostrongyliasis.

F. Lombard , D Basset , G. Cambonie , P. Bastien , E. Jeziorski
Médecine et santé tropicales , 2018, 28 (1), pp.76-81. ⟨10.1684/mst.2018.0756⟩
Article dans une revue hal-01957540 v1

Vertical structure of plankton communities in areas of European eel larvae distribution in the Sargasso Sea

Peter Munk , Torkel Gissel Nielsen , Cornelia Jaspers , Daniel J. Ayala , Kam W. Tang et al.
Journal of Plankton Research, 2018, 40 (4), pp.362-375. ⟨10.1093/plankt/fby025⟩
Article dans une revue hal-03505057 v1
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Mammoth grazers on the ocean's minuteness: a review of selective feeding using mucous meshes

Keats R Conley , Fabien Lombard , Kelly R Sutherland
Proceedings of the Royal Society B: Biological Sciences, 2018, 285 (1978), pp.20180056. ⟨10.1098/rspb.2018.0056⟩
Article dans une revue hal-01812596 v1
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Ocean current connectivity propelling the secondary spread of a marine invasive comb jelly across western Eurasia

Cornelia Jaspers , Ulrich Niermann , Victor T. Langenberg , Elvire Antajan , Bastian Huwer et al.
Global Ecology and Biogeography, 2018, 27 (7), pp.814-827. ⟨10.1111/geb.12742⟩
Article dans une revue hal-02002281 v1

Author Correction: Surface properties of SAR11 bacteria facilitate grazing avoidance

Ayelet Dadon-Pilosof , Keats R. Conley , Yuval Jacobi , Markus Haber , Fabien Lombard et al.
Nature Microbiology, 2017, 2 (12), pp.1696. ⟨10.1038/s41564-017-0064-8⟩
Article dans une revue hal-04020172 v1

An initial carbon export assessment in the Mediterranean Sea based on drifting sediment traps and the Underwater Vision Profiler data sets,

Simon Ramondenc , M. Goutx , Fabien Lombard , Chiara Santinelli , Pernille Stemann Larsen et al.
Deep Sea Research Part I: Oceanographic Research Papers, 2016, 117, pp.107-119. ⟨10.1016/j.dsr.2016.08.015⟩
Article dans une revue hal-01437158 v1
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Projected impacts of climate change and ocean acidification on the global biogeography of planktonic Foraminifera

Tilla Roy , F. Lombard , Laurent Bopp , Marion Gehlen
Biogeosciences, 2015, 12 (10), pp.2873-2889. ⟨10.5194/bg-12-2873-2015⟩
Article dans une revue hal-01207717 v1

Respiration of fragile planktonic zooplankton: Extending the possibilities with a single method

M. K. S. Lilley , F. Lombard
Journal of Experimental Marine Biology and Ecology, 2015, 471, pp.226--231. ⟨10.1016/j.jembe.2015.06.013⟩
Article dans une revue hal-01445152 v1
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Comparative muscle development of scyphozoan jellyfish with simple and complex life cycles

Rebecca R Helm , Stefano Tiozzo , Martin K S Lilley , Fabien Lombard , Casey W Dunn
EvoDevo, 2015, 6 (1), pp.11. ⟨10.1186/s13227-015-0005-7⟩
Article dans une revue hal-01153728 v1

A first step towards improving copepod cultivation using modelling: the effects of density, crowding, cannibalism, tank design and strain selection on copepod egg production yields

Guillaume Drillet , Fabien Lombard
Aquaculture Research, 2015, 46 (7), pp.1638-1647. ⟨10.1111/are.12317⟩
Article dans une revue istex hal-03502732 v1
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Accumulation of nanoparticles in " jellyfish " mucus: a bio-inspired route to decontamination of nano-waste

Amit Patwa , Alain Thiéry , Fabien Lombard , Martin K.S. Lilley , Claire Boisset et al.
Scientific Reports, 2015, 5, pp.11387 ⟨10.1038/srep11387⟩
Article dans une revue hal-01202430 v1

Respiration demands increase significantly with both temperature and mass in the invasive ctenophore Mnemiopsis leidyi

M. K. S. Lilley , Delphine Thibault , F. Lombard
Journal of Plankton Research, 2014, 36 (3), pp.831-837. ⟨10.1093/plankt/fbu008⟩
Article dans une revue hal-03502770 v1

Individual shrinking to enhance population survival: quantifying the reproductive and metabolic expenditures of a starving jellyfish, Pelagia noctiluca

Martin K. S. Lilley , Amanda Elineau , Martina Ferraris , Alain Thiéry , Lars Stemmann et al.
Journal of Plankton Research, 2014, 36 (6), pp.1585-1597. ⟨10.1093/plankt/fbu079⟩
Article dans une revue hal-03502757 v1
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Culture and growth of the jellyfish Pelagia noctiluca in the laboratory

Martin K. S. Lilley , Martina Ferraris , Amanda Elineau , Léo Berline , Perrine Cuvilliers et al.
Marine Ecology Progress Series, 2014, 510, pp.265-273. ⟨10.3354/meps10854⟩
Article dans une revue hal-03502778 v1

Copepods use chemical trails to find sinking marine snow aggregates

M. Koski , T. Kiorboe , Fabien Lombard
Limnology and Oceanography, 2013, 58 (1), pp.185-192. ⟨10.4319/lo.2013.58.1.0185⟩
Article dans une revue hal-03502646 v1

Seasonal dynamics of early life stages of invasive and native ctenophores give clues to invasion and bloom potential in the Baltic Sea

Cornelia Jaspers , Matilda Haraldsson , Fabien Lombard , Soren Bolte , Thomas Kirboe
Journal of Plankton Research, 2013, 35 (3), pp.582-594. ⟨10.1093/plankt/fbt001⟩
Article dans une revue hal-03502633 v1

Mid-Holocene and last glacial maximum climate simulations with the IPSL model: part II: model-data comparisons

Masa Kageyama , Pascale Braconnot , Laurent Bopp , Véronique Mariotti , Tilla Roy et al.
Climate Dynamics, 2013, 40, pp.2469-2495. ⟨10.1007/S00382-012-1499-5⟩
Article dans une revue istex hal-00873380 v1
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Effect of Type and Concentration of Ballasting Particles on Sinking Rate of Marine Snow Produced by the Appendicularian Oikopleura dioica

Fabien Lombard , Lionel Guidi , Thomas Kiørboe
PLoS ONE, 2013, 8 (9), pp.e75676. ⟨10.1371/journal.pone.0075676⟩
Article dans une revue hal-01771755 v1

Mid-Holocene and Last Glacial Maximum climate simulations with the IPSL model--part I: comparing IPSL_CM5A to IPSL_CM4

Masa Kageyama , Pascale Braconnot , Laurent Bopp , Arnaud Caubel , Marie-Alice Foujols et al.
Climate Dynamics, 2013, 40, pp.2447-2468. ⟨10.1007/S00382-012-1488-8⟩
Article dans une revue istex hal-00873377 v1

Distribution of Pelagia noctiluca (Cnidaria, Scyphozoa) in the Ligurian Sea (NW Mediterranean Sea)

Martina Ferraris , L. Berline , Fabien Lombard
Journal of Plankton Research, 2012, 34 (10), pp.874-885. ⟨10.1093/plankt/fbs049⟩
Article dans une revue hal-00740688 v1

Oxygen respiration rates of benthic foraminifera as measured with oxygen microsensors

E. Geslin , N. Risgaard-Petersen , F. Lombard , E. Metzger , Dewi Langlet et al.
Journal of Experimental Marine Biology and Ecology, 2011, 396 (2), pp.108-114
Article dans une revue hal-01972334 v1
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Holocene evolution of summer winds and marine productivity in the tropical Indian Ocean in response to insolation forcing: data-model comparison

F. Bassinot , C. Marzin , P. Braconnot , O. Marti , E. Mathien-Blard et al.
Climate of the Past, 2011, 7 (3), pp.815-829. ⟨10.5194/cp-7-815-2011⟩
Article dans une revue hal-02921933 v1
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Modelling planktic foraminifer growth and distribution using an ecophysiological multi-species approach

F. Lombard , L. Labeyrie , E. Michel , L. Bopp , E. Cortijo et al.
Biogeosciences, 2011, 8 (4), pp.853-873. ⟨10.5194/bg-8-853-2011⟩
Article dans une revue hal-02913924 v1

Grazer cues induce stealth behavior in marine dinoflagellates

Erik Selander , Hans H. Jakobsen , Fabien Lombard , Thomas Kiorboe
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (10), pp.4030-4034. ⟨10.1073/pnas.1011870108⟩
Article dans une revue hal-04020173 v1
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Experimental and modeling evidence of appendicularian-ciliate interactions

Fabien Lombard , Damien Eloire , Angélique Gobet , Lars Stemmann , John R. Dolan et al.
Limnology and Oceanography, 2010, 55 (1), pp.77 - 90. ⟨10.4319/lo.2010.55.1.0077⟩
Article dans une revue hal-01893823 v1

Marine snow originating from appendicularian houses: Age-dependent settling characteristics

Fabien Lombard , Thomas Kiorboe
Deep Sea Research Part I: Oceanographic Research Papers, 2010, 57 (10), pp.1304-1313. ⟨10.1016/j.dsr.2010.06.008⟩
Article dans une revue istex hal-04020174 v1
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Impact of appendicularians on detritus and export fluxes: a model approach at DyFAMed site

L. Berline , Lars Stemmann , Marcello Vichi , Fabien Lombard , Gaby Gorsky
Journal of Plankton Research, 2010, ⟨10.1093/plankt/FBQ163⟩
Article dans une revue hal-00655066 v1
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Effect of carbonate ion concentration and irradiance on calcification in planktonic foraminifera

F. Lombard , R. da Rocha , J. Bijma , J.-P. Gattuso
Biogeosciences, 2010, 7 (1), pp.247-255. ⟨10.5194/bg-7-247-2010⟩
Article dans une revue hal-03200964 v1

Modelling the temperature dependent growth rates of planktic foraminifera

Fabien Lombard , Laurent Labeyrie , Elisabeth Michel , Howard Spero , David Lea
Marine Micropaleontology, 2009, 70 (1-2), pp.1-7. ⟨10.1016/j.marmicro.2008.09.004⟩
Article dans une revue istex hal-02913780 v1

Particle fluxes and recent sediment accumulation on the Aquitanian margin of Bay of Biscay

Sabine Schmidt , Hélène Howa , Aurélia Mouret , Fabien Lombard , Pierre Anschutz et al.
Continental Shelf Research, 2009, 29 (8), pp.1044-1052. ⟨10.1016/j.csr.2008.11.018⟩
Article dans une revue istex hal-02959706 v1

Appendicularian ecophysiology I

Fabien Lombard , Florent Renaud , Christopher Sainsbury , Antoine Sciandra , Gabriel Gorsky
Journal of Marine Systems, 2009, 78 (4), pp.606 - 616. ⟨10.1016/J.Jmarsys.2009.01.004⟩
Article dans une revue istex hal-01893832 v1

Planktic foraminiferal production along an offshore–onshore transect in the south-eastern Bay of Biscay

S. Retailleau , H. Howa , R. Schiebel , F. Lombard , F. Eynaud et al.
Continental Shelf Research, 2009, 29 (8), pp.1123-1135. ⟨10.1016/j.csr.2008.12.021⟩
Article dans une revue istex hal-02959695 v1
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Temperature effect on respiration and photosynthesis of the symbiont-bearing planktonic foraminifera $Globigerinoides\ ruber$ , $Orbulina\ universa$ , and $Globigerinella\ siphonifera$

F. Lombard , J. Erez , Elisabeth Michel , L. Labeyrie
Limnology and Oceanography Bulletin, 2009, 54 (1), pp.210-218. ⟨10.4319/lo.2009.54.1.0210⟩
Article dans une revue hal-02913778 v1

Appendicularian ecophysiology. II. Modeling nutrition, metabolism, growth and reproduction of the appendicularian Oikopleura dioica

Fabien Lombard , Antoine Sciandra , Gabriel Gorsky
Journal of Marine Systems, 2009, 78 (4), pp.617 - 629. ⟨10.1016/J.Jmarsys.2009.01.005⟩
Article dans une revue istex hal-01893831 v1

Global zoogeography of fragile macrozooplankton in the upper 100-1000 m inferred from the underwater video profiler

Lars Stemmann , Marsh Youngbluth , Kevin Robert , Aino Hosia , Marc Picheral et al.
ICES JOURNAL OF MARINE SCIENCE, 2008, 65 (3), pp.433-442. ⟨10.1093/icesjms/fsn010⟩
Article dans une revue hal-03494350 v1
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Influence of body mass, food concentration, temperature and filtering activity on the oxygen uptake of the appendicularian Oikopleura dioica

F. Lombard , A. Sciandra , G. Gorsky
Marine Ecology Progress Series, 2005, 301, pp.149 - 158. ⟨10.3354/Meps301149⟩
Article dans une revue hal-01893853 v1

A pipeline for in-situ plankton imaging data: Improving our understanding of ocean particle distribution and carbon fluxes using morphological traits

Miriam Beck , Sakina-Dorothée Ayata , Marc Picheral , Fabien Lombard , Rainer Kiko et al.
SFEcologie 2022, Nov 2022, Metz, France
Communication dans un congrès hal-04026448 v1

Are we ready for protist population metagenomics? Challenges to decipher drivers of genetic differentiation in marine planktonic populations

Ophélie da Silva , Enrico Ser-Giacomi , Eric Pelletier , Cécile Fauvelot , Jade Leconte et al.
The 6th International Marine Connectivity Conference (iMarco/Sea-Unicorn), Dec 2021, Paris, France
Communication dans un congrès hal-04230339 v1

TOWARDS INTEGRATION OF NEW DATA DESCRIBING BIOLOGICAL ESSENTIAL OCEAN VARIABLES FROM MARINE COASTAL ECOSYSTEMS.

Véronique Creach , Patricia Cabrera , Luis Felipe Artigas , Gérald Grégori , Jean-Olivier Irrisson et al.
ASLO 2021 - Aquatic Sciences for a Sustainable Future: Nurturing Cooperation, Association for the Sciences of Limnology and Oceanography, Jun 2021, On line, France
Communication dans un congrès hal-03419320 v1

Observing the biology of the ocean through an integrated genomic and imaging approach

L Guidi , F. Not , J.O. Irisson , F. Lombard
Mongoos Workshop, 2020, Online, Unknown Region
Communication dans un congrès hal-04024052 v1

UVP6: a new low power, low cost and deep ocean rated imaging sensor for automatic quantification of particles and plankton from autonomous platforms

Marc Picheral , Emna Abidi , François Berry , Jerome Coindat , Denis Brousseau et al.
Ocean Sciences Meeting, 2020, San Diego, United States
Communication dans un congrès hal-04026430 v1

Typology of Plankton Communities seen by In Situ Imaging, from the Epi to the Mesopelagic Layers of the Global Ocean.

T. Panaiotis , M. Babin , T. Biard , F. Carlotti , L. Coppola et al.
Ocean Science Meeting, 2020, San Diego, USA, Unknown Region
Communication dans un congrès hal-04024041 v1

Pelagia noctiluca as a model to uncover scyphozoan developmental mechanisms.

Y. Kraus , R. Copley , J.M. Aury , F. Rentzsch , F. Lombard et al.
At the roots of bilaterian complexity: Insights from early emerging metazoans., 2019, Evangelische Akademie Tutzing, Germany
Communication dans un congrès hal-04024044 v1

Modeling Pelagia noctiluca dynamics in the Mediterranean Sea

L. Berline , Pierre Guiart , Melika Baklouti , Jean-Christophe Poggiale , Fabien Lombard et al.
6th International Jellyfish Blooms Symposium, Nov 2019, Cape Town, South Africa
Communication dans un congrès hal-02962029 v1

Global in-situ imaging of large plankton and particles by the Underwater Vision Profiler in the upper kilometer of all oceans

L. Stemmann , F. Lombard , L Guidi , L. Coppola , J.O. Irisson et al.
Ocean Science Meeting, 2018, Portland, Oregon, USA, Unknown Region
Communication dans un congrès hal-04024047 v1

THE IMPACT OF CLIMATE CHANGE AND OCEAN ACIDIFICATION ON THE BIOGEOGRAPHY OF FORAMIFERA

Tilla Roy , Laurent Bopp , M. Gehlen , Fabien Lombard
ClimECO2 International Summer School - Oceans, Marine Ecosystems, and Society facing Climate Change, Aug 2010, Brest, France
Communication dans un congrès hal-00502902 v1

Foraminifer from the Bay of Biscay: seasonal flux and d18O variations in sediment trap and surface sediments

E. Michel , H. Howa , T. Kuhnt , F. Lombard , F. Dewilde et al.
FORAMS 2010, Sep 2010, Bonn, Germany
Communication dans un congrès hal-00558907 v1

Particle fluxes and recent sediment accumulation on the Aquitanian margin of Bay of Biscay

Ralf Schiebel , Hélène Howa , Aurélia Mouret , Neven Lončarić , Fabien Lombard et al.
XI International Symposium on Oceanography of the Bay of Biscay, 2008, Saint-Sébastien, Spain
Communication dans un congrès hal-03278246 v1

Vertical distribution of living planktonic foraminifera in the northern part of the Plateau des Landes (Bay of Biscay)

Sophie Retailleau , Hélène Howa , Neven Lončarić , Fabien Lombard , Laurent Labeyrie
XI International Symposium on Oceanography of the Bay of Biscay, 2008, Saint-Sébastien, Spain
Communication dans un congrès hal-03278260 v1

Zooplancton : macroplancton et séries à long terme

Paul Nival , Fabien Lombard , Lars Stemmann , Jacqueline Goy , Janine Cuzin
Chistophe Migon; Antoine Sciandra; Paul Nival. La mer Méditerranée face au changement global 2. Dynamique biologique et évolution de la mer Ligure, ISTE Editions Ltd, pp.115-154, 2021, 978-1-78405-733-6
Chapitre d'ouvrage hal-03200031 v1

Zooplankton II. Macroplankton and Long-Term Series

Paul Nival , Fabien Lombard , Janine Cuzin , Jacqueline Goy , Lars Stemmann
Christophe Migon; Antoine Sciandra; Paul Nival. The Mediterranean Sea in the Era of Global Change 2. 30 Years of Multidisciplinary Study of the Ligurian Sea, ISTE Ltd; John Wiley & Sons, Inc., pp.109-146, 2020, 978-1-78630-586-2. ⟨10.1002/9781119704782.ch4⟩
Chapitre d'ouvrage hal-03199632 v1

TARA Pacific bleaching prevalence of sampling sites (Islands)

Christian R Voolstra , Benjamin C.C Hume , Kyra Pikaar , Guillaume Bourdin , Stéphane Pesant et al.
Autre publication scientifique hal-04384087 v1

TARA Pacific CTAX colony morphological annotations release version 1_1

Guinther Mitushasi , Sylvain Algostini , Benjamin Hume , Yuko Kitano , Julie Poulain et al.
Autre publication scientifique hal-04384090 v1

IMAGED-BASED ANALYSIS OF THE GLOBAL DISTRIBUTION OF ZOOPLANKTON BIOMASS THROUGH A HABITAT MODELLING APPROACH

T.Panaïotis Drago , J.O. Irisson , M. Babin , T. Biard , F. Carlotti et al.
2021
Autre publication scientifique hal-04023030 v1

Tara Pacific V9 18S rDNA metabarcoding dataset

Frédéric Mahé , Nicolas Henry , Cédric Berney , Julie Poulain , Sarah Romac et al.
Autre publication scientifique hal-04384095 v1

Tara Pacific ITS2 Symbiodiniaceae data release version 1

Benjamin C.C. Hume , Julie Poulain , Stéphane Pesant , Caroline Belser , Hans-Joachim Ruscheweyh et al.
Autre publication scientifique hal-04384112 v1

Tara Pacific metabarcoding sequencing (16S, 18S, ITS2) reference & replication tables version 1

Benjamin C.C. Hume , Julie Poulain , Stéphane Pesant , Caroline Belser , Hans-Joachim Ruscheweyh et al.
Autre publication scientifique hal-04384100 v1

Tara Pacific 16S rRNA data analysis release

Hans-Joachim Ruscheweyh , Guillem Salazar , Julie Poulain , Caroline Belser , Quentin Clayssen et al.
Autre publication scientifique hal-04384109 v1

Tara Pacific 18S-based coral host genetic analysis data release version 1

Benjamin C.C. Hume , Julie Poulain , Stéphane Pesant , Caroline Belser , Hans-Joachim Ruscheweyh et al.
Autre publication scientifique hal-04384097 v1

Contribution of the jellyfish Pelagia Noctiluca to carbon export in the Mediterranean Sea

S. Ramondenc , F. Delahaye , D. Eveillard , L. Stemmann , L. Guidi et al.
2017
Autre publication scientifique hal-04023034 v1

Ubiquity of inverted ’gelatinous’ ecosystem pyramids in the global ocean

Lombard Fabien , Guidi Lionel , Manoela Brandão , Coelho Luis Pedro , Colin Sébastien et al.
2025
Pré-publication, Document de travail hal-04887475 v1
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From genome wide SNPs to genomic islands of differentiation: the quest for species diagnostic markers in two scleractinian corals,<i>Pocillopora</i>and<i>Porites</i>

Romane Deshuraud , Alexandre Ottaviani , Julie Poulain , Marine Leprêtre , Odette Beluche et al.
2023
Pré-publication, Document de travail (working paper) hal-04195332 v1
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Insights into biotic and abiotic modulation of ocean mesopelagic communities

Janaina Rigonato , Marko Budinich , Alejandro Murillo , Manoela Brandão , Juan Karlusich et al.
2022
Pré-publication, Document de travail hal-03166899 v1

PlanktonScope: Affordable modular imaging platform for citizen oceanography

Thibaut Pollina , Adam Larson , Fabien Lombard , Hongquan Li , Sebastien Colin et al.
2023
Pré-publication, Document de travail hal-03971945 v1

Plankton Planet : ‘seatizen’ oceanography to assess open ocean life at the planetary scale

Colomban de Vargas , Thibaut Pollina , Sarah Romac , Noan Le Bescot , Nicolas Henry et al.
2023
Pré-publication, Document de travail hal-03971975 v1

Chloroplasts of symbiotic microalgae remain active during bleaching induced by thermal stress in Collodaria (Radiolaria)

Emilie Villar , Vincent Dani , Estelle Bigeard , Tatiana Linhart , Miguel Mendez Sandin et al.
2023
Pré-publication, Document de travail hal-03971941 v1