Florence Débarre

Directrice de Recherche, CNRS
48
Documents

Présentation

This is a test

Publications

Publications

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Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived

Jonathan E Pekar , Niema Moshiri , Philippe Lemey , Alexander Crits-Christoph , Florence Débarre et al.

Virus Evolution, 2025, 11 (1), pp.veaf008. ⟨10.1093/ve/veaf008⟩

Article dans une revue hal-05238665v1
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The Spatial Spread and the Persistence of Gene Drives Are Affected by Demographic Feedbacks, Density Dependence and Allee Effects

Léna Kläy , Léo Girardin , Vincent Calvez , Florence Débarre

Molecular Ecology, 2025, 34 (16), pp.e70028. ⟨10.1111/mec.70028⟩

Article dans une revue hal-05238661v1
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Theories of the origin of SARS-CoV-2 in the light of its continuing evolution

Florence Débarre , Zach Hensel

Comptes Rendus. Biologies, 2025, 348 (G1), pp.189-209. ⟨10.5802/crbiol.183⟩

Article dans une revue (article de synthèse) hal-05269180v1
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Correspondence regarding “Geospatial analysis of open-source intelligence data to early detect laboratory-acquired infections, using the 2019 brucellosis laboratory leak in China as a case study”

Georgios Pappas , Florence Débarre

Infection, In press, ⟨10.1007/s15010-025-02675-w⟩

Article dans une revue hal-05341876v1
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A Critical Reexamination of Recovered SARS-CoV-2 Sequencing Data

Florence Débarre , Zach Hensel

Molecular Biology and Evolution, 2025, 42 (6), pp.msaf109. ⟨10.1093/molbev/msaf109⟩

Article dans une revue hal-05232660v1

What we can and cannot learn from SARS-CoV-2 and animals in metagenomic samples from the Huanan market

Florence Débarre

Virus Evolution, 2024, 10 (1), pp.1-7. ⟨10.1093/ve/vead077⟩

Article dans une revue hal-04753095v1
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Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

Alexander Crits-Christoph , Joshua I Levy , Jonathan E Pekar , Stephen A Goldstein , Reema Singh et al.

Cell, 2024, 187 (19), pp.5468-5482.e11. ⟨10.1016/j.cell.2024.08.010⟩

Article dans une revue hal-05238565v1
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Using early detection data to estimate the date of emergence of an epidemic outbreak

Sofía Jijón , Peter Czuppon , François Blanquart , Florence Débarre

PLoS Computational Biology, 2024, 20 (3), pp.e1011934. ⟨10.1371/journal.pcbi.1011934⟩

Article dans une revue hal-04660551v1
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Modelling daisy quorum drive: A short-term bridge across engineered fitness valleys

Frederik J H de Haas , Léna Kläy , Florence Débarre , Sarah P Otto

PLoS Genetics, 2024, 20 (5), pp.e1011262. ⟨10.1371/journal.pgen.1011262⟩

Article dans une revue hal-04646014v1
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Pulled, pushed or failed: the demographic impact of a gene drive can change the nature of its spatial spread

Léna Kläy , Léo Girardin , Vincent Calvez , Florence Débarre

Journal of Mathematical Biology, 2023, 87, pp.30. ⟨10.1007/s00285-023-01926-4⟩

Article dans une revue hal-03830886v2
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Temporal, age, and geographical variation in vaccine efficacy against infection by the Delta and Omicron variants in the community in France, December 2021 to March 2022

François Blanquart , Clémence Abad , Joevin Ambroise , Mathieu Bernard , Florence Débarre et al.

International Journal of Infectious Diseases, 2023, 133, pp.89-96. ⟨10.1016/j.ijid.2023.04.410⟩

Article dans une revue hal-04275605v1
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A stochastic analysis of the interplay between antibiotic dose, mode of action, and bacterial competition in the evolution of antibiotic resistance

Peter Czuppon , Troy Day , Florence Débarre , François Blanquart

PLoS Computational Biology, 2023, 19 (8), pp.e1011364. ⟨10.1371/journal.pcbi.1011364⟩

Article dans une revue hal-04275613v1
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The French Covid-19 vaccination policy did not solve vaccination inequities: a nationwide study on 64.5 million people

Florence Débarre , Emmanuel Lecoeur , Lucie Guimier , Marie Jauffret-Roustide , Anne-Sophie Jannot

European Journal of Public Health, 2022, 32 (5), pp.825-830. ⟨10.1093/eurpub/ckac125⟩

Article dans une revue hal-03508547v2
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Selection for infectivity profiles in slow and fast epidemics, and the rise of SARS-CoV-2 variants

François Blanquart , Nathanaël Hozé , Benjamin John Cowling , Florence Débarre , Simon Cauchemez

eLife, 2022, 11, pp.e75791. ⟨10.7554/eLife.75791⟩

Article dans une revue hal-03835687v1
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SARS-CoV-2 viral dynamics in infections with Alpha and Beta variants of concern in the French community

Gina Cosentino , Mathieu Bernard , Joëvin Ambroise , Jean-Marc Giannoli , Jérémie Guedj et al.

Journal of Infection, 2022, 84 (1), pp.94-118. ⟨10.1016/j.jinf.2021.07.031⟩

Article dans une revue hal-03835698v1
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Characterisation of vaccine breakthrough infections of SARS-CoV-2 Delta and Alpha variants and within-host viral load dynamics in the community, France, June to July 2021

François Blanquart , Clémence Abad , Joëvin Ambroise , Mathieu Bernard , Gina Cosentino et al.

Eurosurveillance, 2021, 26 (37), pp.2100824. ⟨10.2807/1560-7917.ES.2021.26.37.2100824⟩

Article dans une revue hal-03370775v1
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The stochastic dynamics of early epidemics: probability of establishment, initial growth rate, and infection cluster size at first detection

Peter Czuppon , Emmanuel Schertzer , François Blanquart , Florence Débarre

Journal of the Royal Society Interface, 2021, 18 (184), pp.20210575. ⟨10.1098/rsif.2021.0575⟩

Article dans une revue hal-03439370v1
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Success of prophylactic antiviral therapy for SARS-CoV-2: predicted critical efficacies and impact of different drug-specific mechanisms of action

Peter Czuppon , Florence Débarre , Antonio Gonçalves , Olivier Tenaillon , Alan S Perelson et al.

PLoS Computational Biology, 2021, 17 (3), pp.e1008752. ⟨10.1371/journal.pcbi.1008752⟩

Article dans une revue hal-03003001v3
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The Effect of Habitat Choice on Evolutionary Rescue in Subdivided Populations

Peter Czuppon , François Blanquart , Hildegard Uecker , Florence Débarre

The American Naturalist, 2021, 197 (6), pp.625-643. ⟨10.1086/714034⟩

Article dans une revue hal-03439344v1
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Demographic feedbacks can hamper the spatial spread of a gene drive

Léo Girardin , Florence Débarre

Journal of Mathematical Biology, 2021, 83, pp.67. ⟨10.1007/s00285-021-01702-2⟩

Article dans une revue hal-03121911v2
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Factors favouring the evolution of multidrug resistance in bacteria

Eliott Jacopin , Sonja Lehtinen , Florence Débarre , François Blanquart

Journal of the Royal Society Interface, 2020, 17 (168), ⟨10.1098/rsif.2020.0105⟩

Article dans une revue hal-03002992v1
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MetaPopGen 2.0: a multilocus genetic simulator to model populations of large size

Marco Andrello , Christelle Noirot , Florence Débarre , Stéphanie Manel

Molecular Ecology Resources, 2020, 21 (2), pp.596-608. ⟨10.1111/1755‐0998.13270⟩

Article dans une revue hal-03002459v1
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Can a Population Targeted by a CRISPR-Based Homing Gene Drive Be Rescued?

Nicolas O. Rode , Virginie Courtier-Orgogozo , Florence Débarre

G3, 2020, 10 (9), pp.3403-3415. ⟨10.1534/g3.120.401484⟩

Article dans une revue hal-02978494v1
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The split-and-drift random graph, a null model for speciation

François Bienvenu , Florence Débarre , Amaury Lambert

Stochastic Processes and their Applications, 2019, 129 (6), pp.2010-2048. ⟨10.1016/j.spa.2018.06.009⟩

Article dans une revue hal-01533404v3
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Imperfect Strategy Transmission Can Reverse the Role of Population Viscosity on the Evolution of Altruism

Florence Débarre

Dynamic Games and Applications, 2019, 10, pp.732-763. ⟨10.1007/s13235-019-00326-y⟩

Article dans une revue hal-02406568v1
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Population management using gene drive: molecular design, models of spread dynamics and assessment of ecological risks

Nicolas O. Rode , Arnaud A Estoup , Denis Bourguet , Virginie Courtier-Orgogozo , Florence Débarre

Conservation Genetics, 2019, 20 (4), pp.671-690. ⟨10.1007/s10592-019-01165-5⟩

Article dans une revue (article de synthèse) hal-02338278v1
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Detecting the macroevolutionary signal of species interactions

Luke J Harmon , Cecilia S Andreazzi , Florence Débarre , Jonathan Drury , Emma E Goldberg et al.

Journal of Evolutionary Biology, 2019, 32 (8), pp.769-782. ⟨10.1111/jeb.13477⟩

Article dans une revue hal-03002995v1
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Gene Drives: Dynamics and Regulatory Matters—A Report from the Workshop “Evaluation of Spatial and Temporal Control of Gene Drives,” April 4–5, 2019, Vienna

Bernd Giese , Johannes L Friess , Nicholas H Barton , Philipp W Messer , Florence Débarre et al.

BioEssays, 2019, 10 (9), pp.1900151. ⟨10.1002/bies.201900151⟩

Article dans une revue hal-02321692v1
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Catch me if you can: a spatial model for a brake-driven gene drive reversal

Léo Girardin , Vincent Calvez , Florence Débarre

Bulletin of Mathematical Biology, 2019, 81 (12), pp.5054-5088. ⟨10.1007/s11538-019-00668-z⟩

Article dans une revue hal-01954463v2
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Gender equity at scientific events

Florence Débarre , Nicolas O. Rode , L. V. Ugelvig

Evolution Letters, 2018, 2 (3), pp.148-157. ⟨10.1002/evl3.49⟩

Article dans une revue hal-02622749v1
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Environmentally Mediated Social Dilemmas

Sylvie Estrela , Eric Libby , Jeremy van Cleve , Florence Débarre , Maxime Deforet et al.

Trends in Ecology & Evolution, 2018, 34 (1), pp.6-18. ⟨10.1016/j.tree.2018.10.004⟩

Article dans une revue hal-01941198v1

Linking local adaptation with the evolution of sex differences

Tim Connallon , Florence Débarre , Xiang-Yi Li

Philosophical Transactions of the Royal Society B: Biological Sciences, 2018, 373 (1757), pp.20170414. ⟨10.1098/rstb.2017.0414⟩

Article dans une revue hal-02406588v1
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Chaos and the (Un)Predictability of Evolution in a Changing Environment

Artur Rego-Costa , Florence Débarre , Luis-Miguel Chevin

Evolution - International Journal of Organic Evolution, 2018, 72 (2), pp.375--385. ⟨10.1111/evo.13407⟩

Article dans une revue hal-03985243v1
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Fidelity of parent-offspring transmission and the evolution of social behavior in structured populations

Florence Débarre

Journal of Theoretical Biology, 2017, 420, pp.26 - 35. ⟨10.1016/j.jtbi.2017.02.027⟩

Article dans une revue hal-01484829v1

Evolution of dispersal in spatially and temporally variable environments: the importance of life cycles

François Massol , Florence Débarre

Evolution - International Journal of Organic Evolution, 2015, 69 (7), pp.1925-1937. ⟨10.1111/evo.12699⟩

Article dans une revue istex hal-01165583v1
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Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus

Fanny Gascuel , Marc Choisy , Jean-Marc J.-M. Duplantier , Florence Débarre , Carine Brouat

PLoS Computational Biology, 2013, 9 (5), ⟨10.1371/journal.pcbi.1003039⟩

Article dans une revue hal-02646316v1
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Evolution of host life-history traits in a spatially structured host-parasite system

Florence Débarre , Sébastien Lion , Minus Van Baalen , Sylvain Gandon

The American Naturalist, 2012, 179 (1), pp.52-63. ⟨10.1086/663199⟩

Article dans une revue hal-02122398v1

A critical reexamination of recovered SARS-CoV-2 sequencing data

Florence Débarre , Z. Hensel

2024

Pré-publication, Document de travail hal-04753118v1

Genetic evidence of susceptible wildlife in SARS-CoV-2 positive samples at the Huanan Wholesale Seafood Market, Wuhan: Analysis and interpretation of data released by the Chinese Center for Disease Control

Alex Crits-Christoph , Karthik Gangavarapu , Jonathan Pekar , Niema Moshiri , Reema Singh et al.

2023

Pré-publication, Document de travail hal-04275674v1

Using early detection data to estimate the date of emergence of an epidemic outbreak

S. Jijón , P. Czuppon , F. Blanquart , Florence Débarre

2023

Pré-publication, Document de travail hal-04275665v1
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Spread of the Delta variant, vaccine effectiveness against PCR-detected infections and within-host viral load dynamics in the community in France

François Blanquart , Clémence Abad , Joevin Ambroise , Mathieu Bernard , Gina Cosentino et al.

2021

Pré-publication, Document de travail hal-03289443v1
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SARS-CoV-2 viral dynamics in infections with variants of concern in the French community

Gina Cosentino , Mathieu Bernard , Joëvin Ambroise , Jean-Marc Giannoli , Jérémie Guedj et al.

2021

Pré-publication, Document de travail hal-03217231v1
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Characterization of vaccine-breakthrough infections of SARS-CoV-2 Delta and Alpha variants and within-host viral load dynamics in the community in France

François Blanquart , Clémence Abad , Joevin Ambroise , Mathieu Bernard , Gina Cosentino et al.

2021

Pré-publication, Document de travail hal-03318483v2
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The effect of habitat choice on evolutionary rescue in subdivided populations

Peter Czuppon , François Blanquart , Hildegard Uecker , Florence Débarre

2020

Pré-publication, Document de travail hal-03002998v1