Florence Débarre

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The Spatial Spread and the Persistence of Gene Drives Are Affected by Demographic Feedbacks, Density Dependence and Allee Effects

Léna Kläy , Léo Girardin , Vincent Calvez , Florence Débarre
Molecular Ecology, 2025, 34 (16), pp.e70028. ⟨10.1111/mec.70028⟩
Article dans une revue hal-05238661 v1
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Recently reported SARS-CoV-2 genomes suggested to be intermediate between the two early main lineages are instead likely derived

Jonathan E Pekar , Niema Moshiri , Philippe Lemey , Alexander Crits-Christoph , Florence Débarre et al.
Virus Evolution, 2025, 11 (1), pp.veaf008. ⟨10.1093/ve/veaf008⟩
Article dans une revue hal-05238665 v1
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Theories of the origin of SARS-CoV-2 in the light of its continuing evolution

Florence Débarre , Zach Hensel
Comptes Rendus. Biologies, 2025, 348 (G1), pp.189-209. ⟨10.5802/crbiol.183⟩
Article dans une revue (article de synthèse) hal-05269180 v1
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A Critical Reexamination of Recovered SARS-CoV-2 Sequencing Data

Florence Débarre , Zach Hensel
Molecular Biology and Evolution, 2025, 42 (6), pp.msaf109. ⟨10.1093/molbev/msaf109⟩
Article dans une revue hal-05232660 v1

What we can and cannot learn from SARS-CoV-2 and animals in metagenomic samples from the Huanan market

Florence Débarre
Virus Evolution, 2024, 10 (1), ⟨10.1093/ve/vead077⟩
Article dans une revue hal-04753095 v1
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Genetic tracing of market wildlife and viruses at the epicenter of the COVID-19 pandemic

Alexander Crits-Christoph , Joshua I Levy , Jonathan E Pekar , Stephen A Goldstein , Reema Singh et al.
Cell, 2024, 187 (19), pp.5468-5482.e11. ⟨10.1016/j.cell.2024.08.010⟩
Article dans une revue hal-05238565 v1
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Using early detection data to estimate the date of emergence of an epidemic outbreak

Sofía Jijón , Peter Czuppon , François Blanquart , Florence Débarre
PLoS Computational Biology, 2024, 20 (3), pp.e1011934. ⟨10.1371/journal.pcbi.1011934⟩
Article dans une revue hal-04660551 v1
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Modelling daisy quorum drive: A short-term bridge across engineered fitness valleys

Frederik J H de Haas , Léna Kläy , Florence Débarre , Sarah P Otto
PLoS Genetics, 2024, 20 (5), pp.e1011262. ⟨10.1371/journal.pgen.1011262⟩
Article dans une revue hal-04646014 v1
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Pulled, pushed or failed: the demographic impact of a gene drive can change the nature of its spatial spread

Léna Kläy , Léo Girardin , Vincent Calvez , Florence Débarre
Journal of Mathematical Biology, 2023, 87, pp.30. ⟨10.1007/s00285-023-01926-4⟩
Article dans une revue hal-03830886 v2
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Temporal, age, and geographical variation in vaccine efficacy against infection by the Delta and Omicron variants in the community in France, December 2021 to March 2022

François Blanquart , Clémence Abad , Joevin Ambroise , Mathieu Bernard , Florence Débarre et al.
International Journal of Infectious Diseases, 2023, 133, pp.89-96. ⟨10.1016/j.ijid.2023.04.410⟩
Article dans une revue hal-04275605 v1
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A stochastic analysis of the interplay between antibiotic dose, mode of action, and bacterial competition in the evolution of antibiotic resistance

Peter Czuppon , Troy Day , Florence Débarre , François Blanquart
PLoS Computational Biology, 2023, 19 (8), pp.e1011364. ⟨10.1371/journal.pcbi.1011364⟩
Article dans une revue hal-04275613 v1
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The French Covid-19 vaccination policy did not solve vaccination inequities: a nationwide study on 64.5 million people

Florence Débarre , Emmanuel Lecoeur , Lucie Guimier , Marie Jauffret-Roustide , Anne-Sophie Jannot
European Journal of Public Health, 2022, 32 (5), pp.825-830. ⟨10.1093/eurpub/ckac125⟩
Article dans une revue hal-03508547 v2
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Selection for infectivity profiles in slow and fast epidemics, and the rise of SARS-CoV-2 variants

François Blanquart , Nathanaël Hozé , Benjamin John Cowling , Florence Débarre , Simon Cauchemez
eLife, 2022, 11, pp.e75791. ⟨10.7554/eLife.75791⟩
Article dans une revue hal-03835687 v1
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Characterisation of vaccine breakthrough infections of SARS-CoV-2 Delta and Alpha variants and within-host viral load dynamics in the community, France, June to July 2021

François Blanquart , Clémence Abad , Joëvin Ambroise , Mathieu Bernard , Gina Cosentino et al.
Eurosurveillance, 2021, 26 (37), pp.2100824. ⟨10.2807/1560-7917.ES.2021.26.37.2100824⟩
Article dans une revue hal-03370775 v1
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The stochastic dynamics of early epidemics: probability of establishment, initial growth rate, and infection cluster size at first detection

Peter Czuppon , Emmanuel Schertzer , François Blanquart , Florence Débarre
Journal of the Royal Society Interface, 2021, 18 (184), pp.20210575. ⟨10.1098/rsif.2021.0575⟩
Article dans une revue hal-03439370 v1
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Success of prophylactic antiviral therapy for SARS-CoV-2: predicted critical efficacies and impact of different drug-specific mechanisms of action

Peter Czuppon , Florence Débarre , Antonio Gonçalves , Olivier Tenaillon , Alan S Perelson et al.
PLoS Computational Biology, 2021, 17 (3), pp.e1008752. ⟨10.1371/journal.pcbi.1008752⟩
Article dans une revue hal-03003001 v3
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The Effect of Habitat Choice on Evolutionary Rescue in Subdivided Populations

Peter Czuppon , François Blanquart , Hildegard Uecker , Florence Débarre
The American Naturalist, 2021, 197 (6), pp.625-643. ⟨10.1086/714034⟩
Article dans une revue hal-03439344 v1
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Demographic feedbacks can hamper the spatial spread of a gene drive

Léo Girardin , Florence Débarre
Journal of Mathematical Biology, 2021, 83, pp.67. ⟨10.1007/s00285-021-01702-2⟩
Article dans une revue hal-03121911 v2
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MetaPopGen 2.0: a multilocus genetic simulator to model populations of large size

Marco Andrello , Christelle Noirot , Florence Débarre , Stéphanie Manel
Molecular Ecology Resources, 2020, 21 (2), pp.596-608. ⟨10.1111/1755‐0998.13270⟩
Article dans une revue hal-03002459 v1
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Can a Population Targeted by a CRISPR-Based Homing Gene Drive Be Rescued?

Nicolas O. Rode , Virginie Courtier-Orgogozo , Florence Débarre
G3, 2020, 10 (9), pp.3403-3415. ⟨10.1534/g3.120.401484⟩
Article dans une revue hal-02978494 v1
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Factors favouring the evolution of multidrug resistance in bacteria

Eliott Jacopin , Sonja Lehtinen , Florence Débarre , François Blanquart
Journal of the Royal Society Interface, 2020, 17 (168), ⟨10.1098/rsif.2020.0105⟩
Article dans une revue hal-03002992 v1
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The split-and-drift random graph, a null model for speciation

François Bienvenu , Florence Débarre , Amaury Lambert
Stochastic Processes and their Applications, 2019, 129 (6), pp.2010-2048. ⟨10.1016/j.spa.2018.06.009⟩
Article dans une revue hal-01533404 v3
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Imperfect Strategy Transmission Can Reverse the Role of Population Viscosity on the Evolution of Altruism

Florence Débarre
Dynamic Games and Applications, 2019, 10, pp.732-763. ⟨10.1007/s13235-019-00326-y⟩
Article dans une revue hal-02406568 v1
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Population management using gene drive: molecular design, models of spread dynamics and assessment of ecological risks

Nicolas O. Rode , Arnaud A Estoup , Denis Bourguet , Virginie Courtier-Orgogozo , Florence Débarre
Conservation Genetics, 2019, 20 (4), pp.671-690. ⟨10.1007/s10592-019-01165-5⟩
Article dans une revue (article de synthèse) hal-02338278 v1
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Detecting the macroevolutionary signal of species interactions

Luke J Harmon , Cecilia S Andreazzi , Florence Débarre , Jonathan Drury , Emma E Goldberg et al.
Journal of Evolutionary Biology, 2019, 32 (8), pp.769-782. ⟨10.1111/jeb.13477⟩
Article dans une revue hal-03002995 v1
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Gene Drives: Dynamics and Regulatory Matters—A Report from the Workshop “Evaluation of Spatial and Temporal Control of Gene Drives,” April 4–5, 2019, Vienna

Bernd Giese , Johannes L Friess , Nicholas H Barton , Philipp W Messer , Florence Débarre et al.
BioEssays, 2019, 10 (9), pp.1900151. ⟨10.1002/bies.201900151⟩
Article dans une revue hal-02321692 v1
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Catch me if you can: a spatial model for a brake-driven gene drive reversal

Léo Girardin , Vincent Calvez , Florence Débarre
Bulletin of Mathematical Biology, 2019, 81 (12), pp.5054-5088. ⟨10.1007/s11538-019-00668-z⟩
Article dans une revue hal-01954463 v2
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Environmentally Mediated Social Dilemmas

Sylvie Estrela , Eric Libby , Jeremy van Cleve , Florence Débarre , Maxime Deforet et al.
Trends in Ecology & Evolution, 2018, 34 (1), pp.6-18. ⟨10.1016/j.tree.2018.10.004⟩
Article dans une revue hal-01941198 v1

Linking local adaptation with the evolution of sex differences

Tim Connallon , Florence Débarre , Xiang-Yi Li
Philosophical Transactions of the Royal Society B: Biological Sciences, 2018, 373 (1757), pp.20170414. ⟨10.1098/rstb.2017.0414⟩
Article dans une revue hal-02406588 v1
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Chaos and the (Un)Predictability of Evolution in a Changing Environment

Artur Rego-Costa , Florence Débarre , Luis-Miguel Chevin
Evolution - International Journal of Organic Evolution, 2018, 72 (2), pp.375--385. ⟨10.1111/evo.13407⟩
Article dans une revue hal-03985243 v1
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Gender equity at scientific events

Florence Débarre , Nicolas O. Rode , L. V. Ugelvig
Evolution Letters, 2018, 2 (3), pp.148-157. ⟨10.1002/evl3.49⟩
Article dans une revue hal-02622749 v1
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Fidelity of parent-offspring transmission and the evolution of social behavior in structured populations

Florence Débarre
Journal of Theoretical Biology, 2017, 420, pp.26 - 35. ⟨10.1016/j.jtbi.2017.02.027⟩
Article dans une revue hal-01484829 v1

Evolution of dispersal in spatially and temporally variable environments: the importance of life cycles

François Massol , Florence Débarre
Evolution - International Journal of Organic Evolution, 2015, 69 (7), pp.1925-1937. ⟨10.1111/evo.12699⟩
Article dans une revue istex hal-01165583 v1
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Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus

Fanny Gascuel , Marc Choisy , Jean-Marc J.-M. Duplantier , Florence Débarre , Carine Brouat
PLoS Computational Biology, 2013, 9 (5), ⟨10.1371/journal.pcbi.1003039⟩
Article dans une revue hal-02646316 v1
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Evolution of host life-history traits in a spatially structured host-parasite system

Florence Débarre , Sébastien Lion , Minus Van Baalen , Sylvain Gandon
The American Naturalist, 2012, 179 (1), pp.52-63. ⟨10.1086/663199⟩
Article dans une revue hal-02122398 v1

A critical reexamination of recovered SARS-CoV-2 sequencing data

Florence Débarre , Z. Hensel
2024
Pré-publication, Document de travail hal-04753118 v1

Genetic evidence of susceptible wildlife in SARS-CoV-2 positive samples at the Huanan Wholesale Seafood Market, Wuhan: Analysis and interpretation of data released by the Chinese Center for Disease Control

Alex Crits-Christoph , Karthik Gangavarapu , Jonathan Pekar , Niema Moshiri , Reema Singh et al.
2023
Pré-publication, Document de travail hal-04275674 v1

Using early detection data to estimate the date of emergence of an epidemic outbreak

S. Jijón , P. Czuppon , F. Blanquart , Florence Débarre
2023
Pré-publication, Document de travail hal-04275665 v1
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Spread of the Delta variant, vaccine effectiveness against PCR-detected infections and within-host viral load dynamics in the community in France

François Blanquart , Clémence Abad , Joevin Ambroise , Mathieu Bernard , Gina Cosentino et al.
2021
Pré-publication, Document de travail hal-03289443 v1
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SARS-CoV-2 viral dynamics in infections with variants of concern in the French community

Gina Cosentino , Mathieu Bernard , Joëvin Ambroise , Jean-Marc Giannoli , Jérémie Guedj et al.
2021
Pré-publication, Document de travail hal-03217231 v1
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Characterization of vaccine-breakthrough infections of SARS-CoV-2 Delta and Alpha variants and within-host viral load dynamics in the community in France

François Blanquart , Clémence Abad , Joevin Ambroise , Mathieu Bernard , Gina Cosentino et al.
2021
Pré-publication, Document de travail hal-03318483 v2
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The effect of habitat choice on evolutionary rescue in subdivided populations

Peter Czuppon , François Blanquart , Hildegard Uecker , Florence Débarre
2020
Pré-publication, Document de travail hal-03002998 v1