Filipe Borges

26
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Publications

Publications

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Pseudouridine guides germline small RNA transport and epigenetic inheritance

Rowan P Herridge , Jakub Dolata , Valentina Migliori , Cristiane de Santis Alves , Filipe Borges et al.

Nature Structural and Molecular Biology, 2025, 32 (2), ⟨10.1038/s41594-024-01392-6⟩

Article dans une revue hal-04943311v1
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Targeted suppression of siRNA biogenesis in Arabidopsis pollen promotes triploid seed viability

Kannan Pachamuthu , Matthieu Simon , Filipe Borges

Nature Communications, 2024, 15 (1), pp.4612. ⟨10.1038/s41467-024-48950-6⟩

Article dans une revue hal-04642232v1
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Epigenetic control of transposons during plant reproduction: From meiosis to hybrid seeds

Kannan Pachamuthu , Filipe Borges

Current Opinion in Plant Biology, 2023, 75, pp.102419. ⟨10.1016/j.pbi.2023.102419⟩

Article dans une revue hal-04179221v1
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Specificities and Dynamics of Transposable Elements in Land Plants

Corinne Mhiri , Filipe Borges , Marie-Angèle Grandbastien

Biology, 2022, 11 (4), pp.488. ⟨10.3390/biology11040488⟩

Article dans une revue hal-04179211v1

Bypassing reproductive barriers in hybrid seeds using chemically induced epimutagenesis

Jonathan Huc , Katarzyna Dziasek , Kannan Pachamuthu , Tristan Woh , Claudia Köhler et al.

The Plant cell, 2022, 34 (3), pp.989-1001. ⟨10.1093/plcell/koab284⟩

Article dans une revue hal-04179207v1
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Male fertility in Arabidopsis requires active DNA demethylation of genes that control pollen tube function

Souraya Khouider , Filipe Borges , Chantal Leblanc , Alexander Ungru , Arp Schnittger et al.

Nature Communications, 2021, 12 (1), ⟨10.1038/s41467-020-20606-1⟩

Article dans une revue hal-03113753v1

DEFECTIVE EMBRYO AND MERISTEMS genes are required for cell division and gamete viability in Arabidopsis

Chin Hong Lee , Nathaniel Hawker , Jonathan Peters , Thierry Lonhienne , Nial Gursanscky et al.

PLoS Genetics, 2021, 17 (5), pp.e1009561. ⟨10.1371/journal.pgen.1009561⟩

Article dans une revue hal-03363693v1

Loss of Small-RNA-Directed DNA Methylation in the Plant Cell Cycle Promotes Germline Reprogramming and Somaclonal Variation

Filipe Borges , Mark T.A. Donoghue , Chantal Leblanc , Emily Wear , Milos Tanurdžić et al.

Current Biology, 2021, 31 (3), pp.591-600. ⟨10.1016/j.cub.2020.10.098⟩

Article dans une revue hal-03332098v1

Contrasting epigenetic control of transgenes and endogenous genes promotes post-transcriptional transgene silencing in Arabidopsis

Nicolas Butel , Agnès Yu , Ivan Le Masson , Filipe Borges , Taline Elmayan et al.

Nature Communications, 2021, 12 (1), pp.1-12. ⟨10.1038/s41467-021-22995-3⟩

Article dans une revue hal-03318287v1

Polymerase IV Plays a Crucial Role in Pollen Development in Capsella

Zhenxing Wang , Nicolas Butel , Juan Santos-González , Filipe Borges , Jun Yi et al.

The Plant cell, 2020, 32 (4), pp.950-966. ⟨10.1105/tpc.19.00938⟩

Article dans une revue hal-02935298v1

Selection and validation of reference genes for qPCR analysis of miRNAs and their targets during somatic embryogenesis in tamarillo (Solanum betaceum Cav.)

Daniela Cordeiro , Miguel Rito , Filipe Borges , Jorge Canhoto , Sandra Correia

Plant Cell, Tissue and Organ Culture, 2020, 143 (1), pp.109-120. ⟨10.1007/s11240-020-01901-7⟩

Article dans une revue hal-03157305v1

Transposon-derived small RNAs triggered by miR845 mediate genome dosage response in <em>Arabidopsis</em>

Filipe Borges , Jean-Sébastien Parent , Frédéric van Ex , Philip Wolff , German Martinez et al.

Nature Genetics, 2018, 50 (2), pp.186-192. ⟨10.1038/s41588-017-0032-5⟩

Article dans une revue hal-02625249v1
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Epigenetic activation of meiotic recombination near <em>Arabidopsis thaliana</em> centromeres via loss of H3K9me2 and non-CG DNA methylation

Charles J. Underwood , Kyuha Choi , Christophe Lambing , Xiaohui Zhao , Heïdi Serra et al.

Genome Research, 2018, 28 (4), pp.519-531. ⟨10.1101/gr.227116.117⟩

Article dans une revue hal-02624267v1

The expanding world of small RNAs in plants

Filipe Borges , Robert A. Martienssen

Nature Reviews Molecular Cell Biology, 2015, 16 (12), pp.727-741. ⟨10.1038/nrm4085⟩

Article dans une revue hal-02641568v1
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Transcriptional profiling of Arabidopsis root hairs and pollen defines an apical cell growth signature

Jörg D. Becker , Seiji Takeda , Filipe Borges , Liam Dolan , José A. Feijó

BMC Plant Biology, 2014, 14, pp.1-14. ⟨10.1186/s12870-014-0197-3⟩

Article dans une revue hal-02639633v1

miRNAs trigger widespread epigenetically activated siRNAs from transposons in <em>Arabidopsis</em>

Kate M. Creasey , Jixian Zhai , Filipe Borges , Frédéric van Ex , Michael Regulski et al.

Nature, 2014, 508 (7496), pp.411-415. ⟨10.1038/nature13069⟩

Article dans une revue hal-02638598v1

Establishing epigenetic variation during genome reprogramming

Filipe Borges , Robert A. Martienssen

RNA Biology, 2013, 10 (4), pp.490. ⟨10.4161/rna.24085⟩

Article dans une revue hal-02646292v1

Reprogramming of DNA methylation in pollen guides epigenetic inheritance via small RNA

Joseph P. Calarco , Filipe Borges , Mark T. A. Donoghue , Frédéric van Ex , Pauline E. Jullien et al.

Cell, 2012, 151 (1), pp.194-205. ⟨10.1016/j.cell.2012.09.001⟩

Article dans une revue hal-02652232v1
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FACS-based purification of Arabidopsis microspores, sperm cells and vegetative nuclei

Filipe Borges , Rui Gardner , Telma Lopes , Joseph P. Calarco , Leonor C. Boavida et al.

Plant Methods, 2012, 8 (1), pp.1-8. ⟨10.1186/1746-4811-8-44⟩

Article dans une revue hal-02649137v1

Glutamate receptor-like genes form Ca2+ channels in pollen tubes and are regulated by pistil D-serine

Erwan Michard , Pedro T. Lima , Filipe Borges , Ana Catarina Silva , Maria Teresa Portes et al.

Science, 2011, 332 (6028), pp.434-437. ⟨10.1126/science.1201101⟩

Article dans une revue hal-02649951v1

MicroRNA activity in the Arabidopsis male germline

Filipe Borges , Patrícia A. Pereira , R. Keith Slotkin , Robert A. Martienssen , Jörg D. Becker

Journal of Experimental Botany, 2011, 62 (5), pp.1611-1619. ⟨10.1093/jxb/erq452⟩

Article dans une revue hal-02652234v1

Whole genome analysis of gene expression reveals coordinated activation of signaling and metabolic pathways during pollen-pistil interactions in Arabidopsis

Leonor C. Boavida , Filipe Borges , Jörg D. Becker , José A. Feijó

Plant Physiology, 2011, 155 (4), pp.2066-2080. ⟨10.1104/pp.110.169813⟩

Article dans une revue hal-02646294v1

Epigenetic reprogramming and small RNA silencing of transposable elements in pollen

R. Keith Slotkin , Matthew Vaughn , Filipe Borges , Milos Tanurdzic , Jörg D. Becker et al.

Cell, 2009, 136 (3), pp.461-472. ⟨10.1016/j.cell.2008.12.038⟩

Article dans une revue hal-02666128v1

Comparative transcriptomics of Arabidopsis sperm cells

Filipe de Sousa Borges , Gabriela Gomes , Rui Gardner , Nuno Moreno , Sheila Mccormick et al.

Plant Physiology, 2008, 148 (2), pp.1168. ⟨10.1104/pp.108.125229⟩

Article dans une revue hal-02660167v1