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Florence Arsène-Ploetze

Professeure de Microbiologie, Université de Strasbourg
58
Documents
Affiliations actuelles
  • 199013
  • 444
Identifiants chercheurs
  • IdHAL florence-arsene-ploetze
  • Google Scholar : https://scholar.google.fr/citations?user=F41P8moAAAAJ
  • ResearcherId : HZK-3945-2023
Contact
Site web
  • https://www.ibmp.cnrs.fr/annuaire/florence-ploetze/

Présentation

Je travaille actuellement à l'Institut de Biologie Moléculaire des Plantes (IBMP), Université de Strasbourg. Mes recherches portent sur la biologie moléculaire, la microbiologie et la génomique. Mon projet actuel porte sur le rôle des isoprénoïdes dans les interactions microbiote-plante. Mes expériences antérieures de recherche : * Etude de la régulation de la fixation de l'azote chez Azospirillum brasilense * Mécanismes de contrôle des facteurs sigma d'Escherichia coli impliqués dans la régulation de l'expression de gènes en réponse aux stress * Adaptation métabolique chez Lactobacillus plantarum : étude de l'effet du carbone inorganique * Etude de l’adaptation d'isolats naturels et de communautés microbiennes à des environnements extrêmes, contaminés par les éléments toxiques, l’arsenic en particulier
I currently work at the Institut de Biologie Moléculaire des Plantes (IBMP), University of Strasbourg. I do research in Molecular Biology, Microbiology, Genomics. My current project is 'role of isoprenoid in microbiota-plant interactions My previous research experience : * Study of the regulation of nitrogen fixation in Azospirillum brasilense * Control mechanisms of Escherichia coli sigma factors involved in the regulation of gene expression in response to stress. * Metabolic adaptation in Lactobacillus plantarum: study of the effect of inorganic carbon * Study of the adaptation of natural isolates and microbial communities to extreme environments contaminated by toxic elements, particularly arsenic.

Domaines de recherche

Sciences du Vivant [q-bio] Génomique, Transcriptomique et Protéomique [q-bio.GN] Bactériologie

Compétences

Microbiology, Bacterial genomics, environmental microbiology, environmental genomics, plant-bacteria interactions

Publications

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Streptomyces cocklensis DSM 42063 and Actinacidiphila bryophytorum DSM 42138 colonize Arabidopsis thaliana and modulate its proteome

Florence Arsène-Ploetze , Magali Rompais , Abd El Malek Alioua , Valerie Cognat , Mathieu Erhardt
Article dans une revue hal-04195921v1
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The Arabidopsis thaliana–Streptomyces Interaction Is Controlled by the Metabolic Status of the Holobiont

Stéfanie Graindorge , Claire Villette , Sandrine Koechler , Chloé Groh , Sophie Comtet-Marre
International Journal of Molecular Sciences, 2022, 23 (21), pp.12952. ⟨10.3390/ijms232112952⟩
Article dans une revue hal-03858976v1
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Effect of arsenite and growth in biofilm conditions on the evolution of Thiomonas sp. CB2

Kelle C Freel , Stéphanie Fouteau , David Roche , Julien Farasin , Aline Huber
Microbial Genomics, 2020, 6 (10), pp.1-18. ⟨10.1099/mgen.0.000447⟩
Article dans une revue pasteur-02963992v1

Adaptation in toxic environments: comparative genomics of loci carrying antibiotic resistance genes derived from acid mine drainage waters

Florence Arsène-Ploetze , Olfa Chiboub , Didier Lièvremont , Julien Farasin , Kelle Freel
Environmental Science and Pollution Research, 2018, 25 (2), pp.1470-1483. ⟨10.1007/s11356-017-0535-8⟩
Article dans une revue insu-01717528v1
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Comparison of biofilm formation and motility processes in arsenic-resistant Thiomonas spp. strains revealed divergent response to arsenite

Julien Farasin , Sandrine Koechler , Hugo Varet , Julien Deschamps , Marie-Agnès Dillies
Microbial Biotechnology, 2017, Thematic Issue on Biofilms: Microbial Works of Art, 10 (4), pp.789-803. ⟨10.1111/1751-7915.12556/pdf⟩
Article dans une revue insu-01461688v1
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Spatio-Temporal Detection of the Thiomonas Population and the Thiomonas Arsenite Oxidase Involved in Natural Arsenite Attenuation Processes in the Carnoulès Acid Mine Drainage

Agnès Hovasse , Odile Bruneel , Corinne Casiot , Angélique Desoeuvre , Julien Farasin
Frontiers in Cell and Developmental Biology, 2016, 4, ⟨10.3389/fcell.2016.00003⟩
Article dans une revue hal-02086958v1

Arsenite response in Coccomyxa sp. Carn explored by transcriptomic and non-targeted metabolomic approaches

Sandrine Koechler , Philippe N. Bertin , Frédéric Plewniak , Raymonde Baltenweck , Corinne Casiot
Environmental Microbiology, 2016, 18 (4), pp.1289--1300. ⟨10.1111/1462-2920.13227⟩
Article dans une revue hal-02084513v1

Comparative proteomics of Acidithiobacillus ferrooxidans grown in the presence and absence of uranium

Linda Dekker , Florence Arsène-Ploetze , Joanne Santini
Research in Microbiology, 2016, 167 (3), pp.234-239. ⟨10.1016/j.resmic.2016.01.007⟩
Article dans une revue hal-04268076v1

Constitutive arsenite oxidase expression detected in arsenic-hypertolerant Pseudomonas xanthomarina S11

S. Koechler , F. Arsene-Ploetze , Céline Brochier-Armanet , F. Goulhen-Chollet , A. Heinrich-Salmeron
Research in Microbiology, 2015, 166, pp.205-14
Article dans une revue hal-02044782v1

Proteomic tools to decipher microbial community structure and functioning

Florence Arsène-Ploetze , Philippe Bertin , Christine Carapito
Environmental Science and Pollution Research, 2015, 22 (18), pp.13599-13612. ⟨10.1007/s11356-014-3898-0⟩
Article dans une revue hal-04268064v1

Arsenic hypertolerance in the protist Euglena mutabilis is mediated by specific transporters and functional integrity maintenance mechanisms

David Halter , Jérémy Andres , Frédéric Plewniak , Julie Poulain , Corinne da Silva
Environmental Microbiology, 2015, 17 (6), pp.1941-1949. ⟨10.1111/1462-2920.12474⟩
Article dans une revue hal-04268070v1
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Environmental microbiology as a mosaic of explored ecosystems and issues

Denis Faure , Patricia Bonin , Robert Duran , Pierre Amato , Florence Arsene-Ploetze
Environmental Science and Pollution Research, 2015, 22 (18), pp.13577-13598. ⟨10.1007/s11356-015-5164-5⟩
Article dans une revue hal-01247096v1

Toxic metal resistance in biofilms: diversity of microbial responses and their evolution

Sandrine Koechler , Julien Farasin , Jessica Cleiss-Arnold , Florence Arsène-Ploetze
Research in Microbiology, 2015, 166 (10), pp.764-773. ⟨10.1016/j.resmic.2015.03.008⟩
Article dans une revue hal-04268075v1

Adaptation in Toxic Environments: Arsenic Genomic Islands in the Bacterial Genus Thiomonas

Kelle Freel , Martin Krueger , Julien Farasin , Céline Brochier-Armanet , Valérie Barbe
PLoS ONE, 2015, 10 (9), pp.0139011. ⟨10.1371/journal.pone.0139011⟩
Article dans une revue cea-01825879v1
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Thiomonas sp. CB2 is able to degrade urea and promote toxic metal precipitation in acid mine drainage waters supplemented with urea

J. Farasin , J. Andres , Corinne Casiot , Valérie Barbe , J. Faerber
Frontiers in Microbiology, 2015, 6, pp.993. ⟨10.3389/fmicb.2015.00993⟩
Article dans une revue hal-01213792v1

Rapid Impact of Phenanthrene and Arsenic on Bacterial Community Structure and Activities in Sand Batches

Aurélie Cebron , Florence Arsene-Ploetze , Pascale Bauda , Philippe N. Bertin , P. Billard
Microbial ecology, 2014, 67 (1), pp.129-144. ⟨10.1007/s00248-013-0313-1⟩
Article dans une revue hal-01076355v1

Bacterial metabolism of environmental arsenic—mechanisms and biotechnological applications

Martin Kruger , Philippe Bertin , Hermann Heipieper , Florence Arsène-Ploetze
Applied Microbiology and Biotechnology, 2013, 97 (9), pp.3827-3841. ⟨10.1007/s00253-013-4838-5⟩
Article dans une revue hal-04268062v1

An Improved Stable Isotope N-Terminal Labeling Approach with Light/Heavy TMPP To Automate Proteogenomics Data Validation: dN-TOP

Diego Bertaccini , Sebastian Vaca , Christine Carapito , Florence Arsène-Ploetze , Alain van Dorsselaer
Journal of Proteome Research, 2013, 12 (6), pp.3063-3070. ⟨10.1021/pr4002993⟩
Article dans une revue hal-04268054v1
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Differential expression of Ixodes ricinus salivary gland proteins in the presence of the Borrelia burgdorferi sensu lato complex.

Violaine Cotté , Laurence Sabatier , Gilles Schnell , Annick Carmi-Leroy , Jean-Claude Rousselle
Journal of Proteomics, 2013, 96, pp.29-43. ⟨10.1016/j.jprot.2013.10.033⟩
Article dans une revue pasteur-01054566v1
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Life in an arsenic-containing gold mine: genome and physiology of the autotrophic arsenite-oxidizing bacterium rhizobium sp. NT-26.

Jérémy Andres , Florence Arsène-Ploetze , Valérie Barbe , Céline Brochier-Armanet , Jessica Cleiss-Arnold
Genome Biology and Evolution, 2013, 5 (5), pp.934-53. ⟨10.1093/gbe/evt061⟩
Article dans une revue hal-00972245v1

In situ proteo-metabolomics reveals metabolite secretion by the acid mine drainage bio-indicator, Euglena mutabilis

David Halter , Florence Goulhen-Chollet , Sebastien Gallien , Corinne Casiot , Jérôme J. Hamelin
The International Society of Microbiologial Ecology Journal, 2012, 6 (7), pp.1391 - 1402. ⟨10.1038/ismej.2011.198⟩
Article dans une revue hal-02645603v1
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Metabolic diversity among main microorganisms inside an arsenic-rich ecosystem revealed by meta-and proteo-genomics

P.N. Bertin , A. Heinrich-Salmeron , E. Pelletier , F. Goulhen-Chollet , F. Arsène-Ploetze
The International Society of Microbiologial Ecology Journal, 2011, 5 (11), pp.1735-1747. ⟨10.1038/ismej.2011.51⟩
Article dans une revue hal-01631857v1

Surface properties and intracellular speciation revealed an original adaptive mechanism to arsenic in the acid mine drainage bio-indicator Euglena mutabilis

David Halter , Corinne Casiot , Hermann J. Heipieper , Frédéric Plewniak , Marie Marchal
Applied Microbiology and Biotechnology, 2011, pp.first online. ⟨10.1007/s00253-011-3493-y⟩
Article dans une revue hal-00654727v1
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Taxonomic and functional prokaryote diversity in mildly arsenic-contaminated sediments

David Halter , Audrey Cordi , Simonetta Gribaldo , Sébastien Gallien , Florence Goulhen-Chollet
Research in Microbiology, 2011, 162 (9), pp.877-887. ⟨10.1016/j.resmic.2011.06.001⟩
Article dans une revue pasteur-02445836v1
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Characterization of the Active Bacterial Community Involved in Natural Attenuation Processes in Arsenic-Rich Creek Sediments

Odile Bruneel , Aurelie Volant , Sébastien Gallien , Bertrand Chaumande , Corinne Casiot
Microbial ecology, 2011, 61 (4), pp.793-810. ⟨10.1007/s00248-011-9808-9⟩
Article dans une revue hal-02341109v1

Unsuspected Diversity of Arsenite-Oxidizing Bacteria as Revealed by Widespread Distribution of the aoxB Gene in Prokaryotes

Audrey Heinrich-Salmeron , Audrey Cordi , Céline Brochier-Armanet , David Halter , Christophe Pagnout
Applied and Environmental Microbiology, 2011, 77 (13), pp.4685-4692. ⟨10.1128/AEM.02884-10⟩
Article dans une revue hal-04268048v1
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Temporal transcriptomic response during arsenic stress in Herminiimonas arsenicoxydans

Jessica Cleiss-Arnold , Sandrine Koechler , Caroline Proux , Marie-Laure Fardeau , Marie-Agnès Dillies
BMC Genomics, 2010, 11 (1), pp.709. ⟨10.1186/1471-2164-11-709⟩
Article dans une revue pasteur-00670618v1
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Structure, function, and evolution of the Thiomonas spp. genome.

Florence Arsène-Ploetze , Sandrine Koechler , Marie Marchal , Jean-Yves Coppée , Michael Chandler
PLoS Genetics, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩
Article dans une revue hal-00463879v1
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Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans.

Sandrine Koechler , Jessica Cleiss-Arnold , Caroline Proux , Odile Sismeiro , Marie-Agnès Dillies
BMC Microbiology, 2010, 10 (1), pp.53. ⟨10.1186/1471-2180-10-53⟩
Article dans une revue pasteur-00670630v1

Enhanced structural and functional genome elucidation of the arsenite-oxidizing strain Herminiimonas arsenicoxydans by proteomics data.

Stéphanie Weiss , Christine Carapito , Jessica Cleiss , Sandrine Koechler , Evelyne Turlin
Biochimie, 2009, 91 (2), pp.192-203. ⟨10.1016/j.biochi.2008.07.013⟩
Article dans une revue hal-00370778v1
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Carbon and arsenic metabolism in Thiomonas strains: differences revealed diverse adaptation processes

Christopher G. Bryan , Marie Marchal , Fabienne Battaglia-Brunet , Valerie Kugler , Christelle Lemaitre-Guillier
BMC Microbiology, 2009, 9 (127), 12 p. ⟨10.1186/1471-2180-9-127⟩
Article dans une revue hal-00512152v1

Low Carbamoyl Phosphate Pools May Drive Lactobacillus plantarum CO(2)-Dependent Growth Phenotype.

Françoise Bringel , Stéphane Vuilleumier , Florence Arsène-Ploetze
Journal of Molecular Microbiology and Biotechnology, 2008, 14 (1-3), pp.22-30. ⟨10.1159/000107966⟩
Article dans une revue hal-00185855v1

Molecular basis for regulation of the heat shock transcription factor sigma32 by the DnaK and DnaJ chaperones.

Fernanda Rodriguez , Florence Arsène-Ploetze , Wolfgang Rist , Stefan Rüdiger , Jens Schneider-Mergener
Molecular Cell, 2008, 32 (3), pp.347-58. ⟨10.1016/j.molcel.2008.09.016⟩
Article dans une revue hal-00370892v1

Lactobacillus plantarum response to inorganic carbon concentrations: PyrR2-dependent and -independent transcription regulation of genes involved in arginine and nucleotide metabolism.

Françoise Bringel , Philippe Hammann , Valérie Kugler , Florence Arsène-Ploetze
Microbiology, 2008, 154 (Pt 9), pp.2629-40. ⟨10.1099/mic.0.2008/018184-0⟩
Article dans une revue hal-00347602v1
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A tale of two oxidation states: bacterial colonization of arsenic-rich environments.

Daniel Muller , Claudine Médigue , Sandrine Koechler , Valérie Barbe , ​mohamed Barakat
PLoS Genetics, 2007, 3 (4), pp.e53. ⟨10.1371/journal.pgen.0030053⟩
Article dans une revue hal-00340034v1

Uracil salvage pathway in Lactobacillus plantarum: Transcription and genetic studies.

Florence Arsène-Ploetze , Hervé Nicoloff , Benoît Kammerer , Jan Martinussen , Françoise Bringel
Journal of Bacteriology, 2006, 188 (13), pp.4777-86. ⟨10.1128/JB.00195-06⟩
Article dans une revue hal-00107338v1

Expression of the pyr operon of Lactobacillus plantarum is regulated by inorganic carbon availability through a second regulator, PyrR2, homologous to the pyrimidine-dependent regulator PyrR1.

Florence Arsene-Ploetze , Valerie Kugler , Jan Martinussen , Françoise Bringel
Journal of Bacteriology, 2006, 188 (24), pp.8607-16. ⟨10.1128/JB.00985-06⟩
Article dans une revue hal-00107334v1

Lactobacillus plantarum ccl gene is non-essential, arginine-repressed and codes for a conserved protein in Firmicutes.

Florence Arsène-Ploetze , Hervé Nicoloff , Françoise Bringel
Archives of Microbiology, 2005, 183 (5), pp.307-16. ⟨10.1007/s00203-005-0774-9⟩
Article dans une revue hal-00112051v1

Repression of the pyr operon in Lactobacillus plantarum prevents its ability to grow at low carbon dioxide levels.

Hervé Nicoloff , Aram Elagöz , Florence Arsène-Ploetze , Benoît Kammerer , Jan Martinussen
Journal of Bacteriology, 2005, 187 (6), pp.2093-104. ⟨10.1128/JB.187.6.2093-2104.2005⟩
Article dans une revue hal-00112056v1
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Role of inorganic carbon in lactic acid bacteria metabolism

Florence Arsène-Ploetze , Françoise Bringel
Le Lait, 2004, 84 (1-2), pp.49-59. ⟨10.1051/lait:2003040⟩
Article dans une revue hal-00895525v1

Two arginine repressors regulate arginine biosynthesis in Lactobacillus plantarum.

Hervé Nicoloff , Florence Arsène-Ploetze , Cédric Malandain , Michiel Kleerebezem , Françoise Bringel
Journal of Bacteriology, 2004, 186 (18), pp.6059-69. ⟨10.1128/JB.186.18.6059-6069.2004⟩
Article dans une revue hal-00110626v1

Phylogenetic analysis and gene linkage of ArgR/AhrC orthologs revealed groups of syntenie in Gram-positive bacteria

Françoise Bringel , Hervé Nicoloff , Florence Arsène-Ploetze , Jean-Claude Hubert
Sciences des aliments = Food science : an international journal of food science and technology, 2002, 22 (1-2), pp.133-142. ⟨10.3166/sda.22.133-142⟩
Article dans une revue hal-04268039v1

The C Terminus of sigma32 Is Not Essential for Degradation by FtsH

Toshifumi Tomoyasu , Florence Arsène , Teru Ogura , Bernd Bukau
Journal of Bacteriology, 2001, 183 (20), pp.5911-5917. ⟨10.1128/JB.183.20.5911-5917.2001⟩
Article dans une revue hal-04267924v1

The heat shock response of Escherichia coli

Florence Arsène , Toshifumi Tomoyasu , Bernd Bukau
International Journal of Food Microbiology, 2000, 55 (1-3), pp.3-9. ⟨10.1016/s0168-1605(00)00206-3⟩
Article dans une revue hal-04267932v1

Role of Region C in Regulation of the Heat Shock Gene-Specific Sigma Factor of Escherichia coli , ς 32

Florence Arsène , Toshifumi Tomoyasu , Axel Mogk , Christiane Schirra , Agnes Schulze-Specking
Journal of Bacteriology, 1999, 181 (11), pp.3552-3561. ⟨10.1128/JB.181.11.3552-3561.1999⟩
Article dans une revue hal-04267936v1

Control of Azospirillum brasilense NifA activity by P II : effect of replacing Tyr residues of the NifA N-terminal domain on NifA activity

Florence Arsène , Pierre-Alexandre Kaminski , Claudine Elmerich
FEMS Microbiology Letters, 1999, 179 (2), pp.339-343. ⟨10.1111/j.1574-6968.1999.tb08747.x⟩
Article dans une revue pasteur-03659718v1

Modulation of NifA activity by PII in Azospirillum brasilense: evidence for a regulatory role of the NifA N-terminal domain

Florence Arsene , Pierre-Alexandre Kaminski , Claudine Elmerich
Journal of Bacteriology, 1996, 178 (16), pp.4830-4838. ⟨10.1128/jb.178.16.4830-4838.1996⟩
Article dans une revue pasteur-03659875v1

Use of lacZ Fusions to Study the Expression of nif Genes of Azospirillum brasilense in Association with Plants

Florence Arsene , Sunietha Katupitiya , Ivan Kennedy , Claudine Elmerich
Molecular Plant-Microbe Interactions, 1994, 7 (6), pp.748. ⟨10.1094/MPMI-7-0748⟩
Article dans une revue hal-04268001v1

Characterization of the ntrBC genes of Azospirillam brasilense Sp7: Their involvement in the regulation of nitrogenase synthesis and activity

Yao Yun Liang , Florence Arsène , Claudine Elmerich
Molecular and General Genetics MGG, 1993, 240 (2), pp.188-196. ⟨10.1007/BF00277056⟩
Article dans une revue hal-04267973v1

Regulation of nitrogen fixation in Azospirillum brasilense Sp7: Involvement of nifA, glnA and glnB gene products

Yao Yun Liang , Miklos Zamaroczy , Florence Arsene , Annick Paquelin , Claudine Elmerich
FEMS Microbiology Letters, 1992, 100 (1-3), pp.113-119. ⟨10.1111/j.1574-6968.1992.tb14028.x⟩
Article dans une revue hal-04267966v1

Proteomics as a Tool for the Characterization of Microbial Isolates and Complex Communities

Florence Arsène-Ploetze , Christine Carapito , Frederic Plewniak , Philippe N.
Proteomic Applications in Biology, InTech, 2012, ⟨10.5772/29689⟩
Chapitre d'ouvrage hal-04268207v1

Microbial arsenic response and metabolism in the genomics era

Philippe N. Bertin , Lucie Geist , David Halter , Sandrine Koechler , Marie Marchal
Joanne M. Santini, Seamus A. Ward. The Metabolism of Arsenite, CRC Press, pp.99-114, 2012, ⟨10.1201/b12350-9⟩
Chapitre d'ouvrage hal-04268269v1

Arsenic stress in bacteria: involvement in the colonization of arsenic-contaminated environments?

D. Muller , C. Carapito , S. Koechler , S. Weiss , A. Salmeron
Zhu Y., Lepp N. & Naidu R. Biochemistry of trace elements: environmental protection, remediation and human health, Tsinghua University Press, pp.544-545, 2007
Chapitre d'ouvrage halsde-00232173v1

Colonisation of Wheat Roots by Azospirillum Brasilense Wild Type and by Mutant Strains Impaired in Flocculation and Motility

L. Pereg-Gerk , F. Arsène , P. Gounon , A. Paquelin , R. Carreno-Lopez
Biological Nitrogen Fixation for the 21st Century, 31, Springer Netherlands, pp.395-395, 1998, Current Plant Science and Biotechnology in Agriculture, 978-94-010-6169-8. ⟨10.1007/978-94-011-5159-7_240⟩
Chapitre d'ouvrage hal-04268297v1

Involvement of nifA and glnB genes in expression of nitrogen fixation genes in Azospirillum brasilense

Florence Arsène , Claudine Elmerich
Fendrik, I., del Gallo, M., Vanderleyden, J., de Zamaroczy, M. Azospirillum VI and Related Microorganisms, 37, Springer Berlin Heidelberg, pp.91-96, 1995, 978-3-642-79908-2. ⟨10.1007/978-3-642-79906-8_7⟩
Chapitre d'ouvrage hal-04268324v1

Regulation of NifA Synthesis and Activity in Azospirillum Brasilense Sp7

M. de Zamaroczy , Y. Liang , A. Kaminski , F. Arsene , C. Elmerich
Palacios, R., Mora, J., Newton, W.E. New Horizons in Nitrogen Fixation, 17, Springer Netherlands, pp.423-427, 1993, Current Plant Science and Biotechnology in Agriculture, 978-90-481-4255-2. ⟨10.1007/978-94-017-2416-6_44⟩
Chapitre d'ouvrage hal-04268357v1