Florence Hommais

31
Documents

Publications

Publications

Deposit thumbnail

Quantitative spatial analysis of bacterial transcriptome and chromosome structural data with GRATIOSA: application to twin-supercoiled domain distribution

Maïwenn Pineau , Raphaël Forquet , Sylvie Reverchon , William Nasser , Florence Hommais et al.

Nucleic Acids Research, 2025, 53, ⟨10.1093/nar/gkaf452⟩

Article dans une revue hal-05098795v1
Deposit thumbnail

What is a supercoiling-sensitive gene? Insights from topoisomerase I inhibition in the Gram-negative bacterium Dickeya dadantii

Maïwenn Pineau , Shiny Martis Badiadka , Raphaël Forquet , Jessica Baude , Camille Villard et al.

Nucleic Acids Research, 2022, 50 (16), pp.9149-9161. ⟨10.1093/nar/gkac679⟩

Article dans une revue hal-03774489v1
Deposit thumbnail

Mapping the Complex Transcriptional Landscape of the Phytopathogenic Bacterium Dickeya dadantii

Raphaël Forquet , Xuejiao Jiang , William Nasser , Florence Hommais , Sylvie Reverchon et al.

mBio, 2022, 13, ⟨10.1128/mbio.00524-22⟩

Article dans une revue hal-03715992v1

Agrobacterium fabrum C58 involved nitrate reductase NapA and antisense RNA NorR to denitrify

Solène Lecomte , Xavier Nesme , Théophile Franzino , Camille Villard , Mariane Pivard et al.

FEMS Microbiology Ecology, 2021, 97 (1), ⟨10.1093/femsec/fiaa233⟩

Article dans une revue hal-03238010v1
Deposit thumbnail

RNA Chaperones Hfq and ProQ Play a Key Role in the Virulence of the Plant Pathogenic Bacterium Dickeya dadantii

Simon Leonard , Camille Villard , William Nasser , Sylvie Reverchon , Florence Hommais

Frontiers in Microbiology, 2021, 12, pp.687484. ⟨10.3389/fmicb.2021.687484⟩

Article dans une revue hal-03336963v1
Deposit thumbnail

Quorum Sensing Regulation in Phytopathogenic Bacteria

Julie Baltenneck , Sylvie Reverchon , Florence Hommais

Microorganisms, 2021, 9 (2), pp.239. ⟨10.3390/microorganisms9020239⟩

Article dans une revue hal-03336957v1

Plasmid‐chromosome crosstalks

Ludovic Vial , Florence Hommais

Environmental Microbiology, 2020, 22 (2), pp.540-556. ⟨10.1111/1462-2920.14880⟩

Article dans une revue (article de synthèse) hal-02389634v1
Deposit thumbnail

The nucleoid-associated protein IHF acts as a ‘transcriptional domainin’ protein coordinating the bacterial virulence traits with global transcription

Sylvie Reverchon , Sam Meyer , Raphaël Forquet , Florence Hommais , Georgi Muskhelishvili et al.

Nucleic Acids Research, 2020, ⟨10.1093/nar/gkaa1227⟩

Article dans une revue hal-03091721v1

A novel plasmid‐transcribed regulatory sRNA, QfsR, controls chromosomal polycistronic gene expression in Agrobacterium fabrum

Benjamin Diel , Magali Dequivre , Florence Wisniewski-Dyé , Ludovic Vial , Florence Hommais

Environmental Microbiology, 2019, 21 (8), pp.3063-3075. ⟨10.1111/1462-2920.14704⟩

Article dans une revue hal-02161890v1
Deposit thumbnail

APERO: a genome-wide approach for identifying bacterial small RNAs from RNA-Seq data

Simon Leonard , Sam Meyer , Stéphan Lacour , William Nasser , Florence Hommais et al.

Nucleic Acids Research, 2019, 47 (15), pp.1-12. ⟨10.1093/nar/gkz485⟩

Article dans une revue hal-02152104v1
Deposit thumbnail

Erratum to: Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans

Sandrine Koechler , Jessica Cleiss-Arnold , Caroline Proux , Odile Sismeiro , Marie-Agnès Dillies et al.

BMC Microbiology, 2017, 17 (1), pp.74. ⟨10.1186/s12866-017-0976-8⟩

Article dans une revue hal-02001351v1

Plant-phytopathogen interactions: bacterial responses to environmental and plant stimuli

Simon Leonard , Florence Hommais , William Nasser , Sylvie Reverchon

Environmental Microbiology, 2017, 19 (5), pp.1689 - 1716. ⟨10.1111/1462-2920.13611⟩

Article dans une revue hal-01759780v1

Global transcriptional response of Dickeya dadantii to environmental stimuli relevant to the plant infection

X. Jiang , O. Zghidi-Abouzid , C. Oger-Desfeux , F. Hommais , N. Greliche et al.

Environmental Microbiology, 2016, 18 (11), pp.3651-3672

Article dans une revue hal-01997044v1

Coordinated Regulation of Species-Specific Hydroxycinnamic Acid Degradation and Siderophore Biosynthesis Pathways in Agrobacterium fabrum

Jessica Baude , Ludovic Vial , Camille Villard , Tony Campillo , Céline Lavire et al.

Applied and Environmental Microbiology, 2016, 82 (12), pp.3515-3524. ⟨10.1128/aem.00419-16⟩

Article dans une revue hal-01910930v1

Small RNA deep-sequencing analyses reveal a new regulator of virulence in Agrobacterium fabrum C58

Magali Dequivre , Benjamin Diel , Camille Villard , Odile Sismeiro , Maxime Durot et al.

Molecular Plant-Microbe Interactions, 2015, 28 (5), pp.580-589. ⟨10.1094/MPMI-12-14-0380-FI⟩

Article dans une revue hal-01205620v1

Analysis of hydroxycinnamic acids degradation in Agrobacterium fabrum reveals a CoA-dependent, beta-oxidative deacetylation pathway

Tony Campillo , Sébastien Renoud , Isabelle Kerzaon , Ludovic Vial , Jessica Baude et al.

Applied and Environmental Microbiology, 2014, 80 (11), pp.3341-3349. ⟨10.1128/AEM.00475-14⟩

Article dans une revue hal-01010603v1

Structural basis for selective GABA binding in bacterial pathogens

S. Planamente , S. Mondy , Florence Hommais , A. Vigouroux , S. Morera et al.

Molecular Microbiology, 2012, 86 (5), pp.1085-99. ⟨10.1111/mmi.12043⟩

Article dans une revue hal-02001293v1
Deposit thumbnail

Genomic Species Are Ecological Species as Revealed by Comparative Genomics in Agrobacterium tumefaciens

Florent Lassalle , Tony Campillo , Ludovic Vial , Jessica Baude , Denis Costechareyre et al.

Genome Biology and Evolution, 2011, 3 (3), pp.762-781. ⟨10.1093/gbe/evr070⟩

Article dans une revue halsde-00723400v1
Deposit thumbnail

lpxC and yafS are the Most Suitable Internal Controls to Normalize Real Time RT-qPCR Expression in the Phytopathogenic Bacteria Dickeya dadantii

Florence Hommais , Ouafa Zghidi-Abouzid , Christine Oger-Desfeux , Emilie Pineau , Frederique van Gijsegem et al.

PLoS ONE, 2011, 6 (5), ⟨10.1371/journal.pone.0020269⟩

Article dans une revue hal-01190471v1
Deposit thumbnail

Structure, function, and evolution of the Thiomonas spp. genome.

Florence Arsène-Ploetze , Sandrine Koechler , Marie Marchal , Jean-Yves Coppée , Michael Chandler et al.

PLoS Genetics, 2010, 6 (2), pp.e1000859. ⟨10.1371/journal.pgen.1000859⟩

Article dans une revue hal-00463879v1
Deposit thumbnail

Multiple controls affect arsenite oxidase gene expression in Herminiimonas arsenicoxydans

Sandrine Koechler , Jessica Cleiss-Arnold , Caroline Proux , Odile Sismeiro , Marie-Agnès Dillies et al.

BMC Microbiology, 2010, 10 (1), pp.53. ⟨10.1186/1471-2180-10-53⟩

Article dans une revue pasteur-00670630v1

PecS is a global regulator of the symptomatic phase in the phytopathogenic bacterium Erwinia chrysanthemi 3937

F. Hommais , C. Oger-Desfeux , F. van Gijsegem , S. Castang , S. Ligori et al.

Journal of Bacteriology, 2008, 190 (22), pp.7508-22

Article dans une revue hal-01997038v1

H-NS and H-NS-like proteins in Gram-negative bacteria and their multiple role in the regulation of bacterial metabolism.

Philippe Bertin , Florence Hommais , Evelyne Krin , Olga Soutourina , Christian Tendeng et al.

Biochimie, 2001, 83 (2), pp.235-241. ⟨10.1016/S0300-9084(01)01247-0⟩

Article dans une revue istex hal-01759743v1