florent morio

118
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Publications

Multicenter Analysis of General presentations and Imaging features in Cerebral MUCORmycosis (MAGICMUCOR): towards different entities

Clémentine de la Porte Des Vaux , Corentin Provost , Anne Coste , Raoul Herbrecht , Blandine Denis et al.

Medical Mycology, 2026, 64, ⟨10.1093/mmy/myaf122⟩

Article dans une revue hal-05456570v1
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Compassionate Use of Olorofim for Invasive Mold Infections: A Nationwide Observational Study in France

V Esnault , C. Godet , D Garcia-Hermoso , A. Charmillon , P Parize et al.

Open Forum Infectious Diseases, 2026, 13 (1), pp.ofaf750. ⟨10.1093/ofid/ofaf750⟩

Article dans une revue hal-05512639v1
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Clinical Manifestations of Emerging Trichosporon spp. Infections, France

Marie Desnos-Ollivier , Alexandre Alanio , Maud Gits-Muselli , Karine Boukris-Sitbon , Agathe Bertho et al.

Emerging Infectious Diseases, 2026, 32 (1), pp.93-102. ⟨10.3201/eid3201.250504⟩

Article dans une revue hal-05491298v1

Development of in-house ELISA for Scedosporium/Lomentospora serodiagnosis

Coralie Barrera , Marie-Elisabeth Bougnoux , Claire Hoffmann , Céline Damiani , Damien Costa et al.

Medical Mycology, 2025, 63 (8), pp.myaf067. ⟨10.1093/mmy/myaf067⟩

Article dans une revue hal-05185259v1
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The diagnosis of mucormycosis by PCR in patients at risk: a systematic review and meta-analysis

Lottie Brown , Lena Tschiderer , Alexandre Alanio , Rosemary Barnes , Sharon C-A Chen et al.

EClinicalMedicine, 2025, 81, pp.103115. ⟨10.1016/j.eclinm.2025.103115⟩

Article dans une revue hal-05014057v1
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Association between mycophenolic acid treatment and infection with specific strains of Pneumocystis jirovecii in solid organ transplant recipients in France and Switzerland: a multicentre, retrospective, cross-sectional study

Claire V Hoffmann , Yannick Le Meur , Marie-Christine Moal , Anne Grall-Jézéquel , Nathan Le Nan et al.

The Lancet Microbe, 2025, 6 (9), pp.101146. ⟨10.1016/j.lanmic.2025.101146⟩

Article dans une revue hal-05217817v1
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Screening, prevalence, and risk factors for secondary localization during candidemia in intensive care unit patients: the French CandidICU multicenter study

Florian Reizine , Juliette Henry , Luc Desmedt , Christophe Camus , Valentin Coirier et al.

Critical Care, 2025, 29 (1), pp.281. ⟨10.1186/s13054-025-05527-z⟩

Article dans une revue hal-05162430v1
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Antifungal Resistance in Non-fumigatus Aspergillus Species

Elie Djenontin , Rose-Anne Lavergne , Florent Morio , Eric Dannaoui

Mycoses, 2025, 68 (4), pp.e70051. ⟨10.1111/myc.70051⟩

Article dans une revue hal-05333903v1

Prognostic impact and safety of early adjunctive corticosteroid therapy in HIV-negative severe pneumocystis pneumonia: a propensity-matched multicentre study

Florian Reizine , Vicky Stiegler , Romain Lecuyer , Benoit Tessoulin , Guillaume Rieul et al.

Thorax, 2025, pp.thorax-2025-223504. ⟨10.1136/thorax-2025-223504⟩

Article dans une revue inserm-05509714v1
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Hyperinfection with Anisakis simplex sensu stricto: observations from a cluster of two cases in France

Manon Robert , Maureen Duflot , Fakhri Jeddi , Carelle Koudougou , Louise Durand et al.

Food and Waterborne Parasitology, 2025, 40, pp.e00282. ⟨10.1016/j.fawpar.2025.e00282⟩

Article dans une revue hal-05295420v1

Agrochemical fungicides as environmental drivers of antifungal resistance

Aura Lucia Chacon Parra , Vinicius Carvalho Pereira , Alyne Soares Freitas , Marcos Alves De Souza-Filho , Ana Sarah Aguiar Viera et al.

Science of the Total Environment, 2025, 1000, pp.180385. ⟨10.1016/j.scitotenv.2025.180385⟩

Article dans une revue hal-05329525v1

Trichosporon and Antifungal Resistance: Current Knowledge and Gaps

Isabela Lima Miranda , Nalu Teixeira Aguiar Peres , Rafael Wesley Bastos , Luana Rossato , Florent Morio et al.

Mycopathologia, 2025, 190 (4), pp.59. ⟨10.1007/s11046-025-00969-z⟩

Article dans une revue hal-05327796v1

Elevating fungal care: bridging Brazil’s healthcare practices to global standards

Jon Salmanton-García , Diego Falci , Oliver Cornely , Alessandro Pasqualotto , Afonso Barth et al.

Microbiology Spectrum, 2025, 13 (4), pp.102799. ⟨10.1128/spectrum.02112-24⟩

Article dans une revue hal-05169393v1
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Features of Invasive Aspergillosis Caused by Aspergillus flavus , France, 2012–2018

Lise Bertin-Biasutto , Olivier Paccoud , Dea Garcia-Hermoso , Blandine Denis , Karine Boukris-Sitbon et al.

Emerging Infectious Diseases, 2025, 31 (5), pp.896-905. ⟨10.3201/eid3105.241392⟩

Article dans une revue hal-05169425v1
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Kodamaea ohmeri : an emergent yeast from a One Health perspective

Sthefany Emanuelle Silva , Lorena Souza Silva , Ludmila Gouveia Eufrasio , Gabriela Silva Cruz , Fabíola Lucini et al.

Current Research in Microbial Sciences, 2025, 8, pp.100359. ⟨10.1016/j.crmicr.2025.100359⟩

Article dans une revue hal-05162032v1
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Yeast fungaemia among injection drug users in France (2012–2022): a cross-sectional observational study

Olivier Paccoud , Olivier Lortholary , Sebastien Imbert , Valerie Letscher-Bru , Karine Boukris-Sitbon et al.

The Lancet Regional Health - Europe, 2025, 55, pp.101365. ⟨10.1016/j.lanepe.2025.101365⟩

Article dans une revue pasteur-05142436v1
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Interlaboratory assays from the fungal PCR Initiative and the Modimucor Study Group to improve qPCR detection of Mucorales DNA in serum: one more step toward standardization

Steffi Rocchi , Emeline Scherer , P Lewis White , Audrey Guitton , Alexandre Alanio et al.

Journal of Clinical Microbiology, 2025, 63 (2), pp.e0152524. ⟨10.1128/jcm.01525-24⟩

Article dans une revue hal-04862485v1
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A one health perspective on Diutina catenulata: Phenotypic traits, stress sensitivity, and virulence across diverse isolates

Ianca Karine Prudencio de Albuquerque , Florent Morio , Marjorie Albassier , Luc Baron , Léa Duchesne et al.

Journal of Medical Mycology = Journal de Mycologie Médicale, 2025, 35, pp.101583. ⟨10.1016/j.mycmed.2025.101583⟩

Article dans une revue hal-05329491v1
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Respiratory management of critically ill pneumocystis pneumonia patients: a multicenter retrospective study

Florian Reizine , Vicky Stiegler , Romain Lécuyer , Benoit Tessoulin , Marie Gallais et al.

Annals of Intensive Care, 2025, 15, pp.114. ⟨10.1186/s13613-025-01503-6⟩

Article dans une revue hal-05334494v1

Epidemiology and Prognostic Factors Associated With Mold-Positive Blood Cultures: 10-Year Data From a French Prospective Surveillance Program (2012–2022)

Thiziri Tala-Ighil , Dea Garcia-Hermoso , Frédéric Dalle , Sophie Cassaing , Juliette Guitard et al.

Clinical Infectious Diseases, 2025, 80 (3), pp.529-539. ⟨10.1093/cid/ciae594⟩

Article dans une revue pasteur-04882051v1
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The epidemiology of fungal infections in transplant patients

Dorra Elhaj Mahmoud , Anaïs Herivaux , Florent Morio , Benoit Briard , Cécile Vigneau et al.

Biomedical journal, 2024, 47 (3), pp.100719. ⟨10.1016/j.bj.2024.100719⟩

Article dans une revue hal-04536323v1
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Cryptococcus neoformans Infections Differ Among Human Immunodeficiency Virus (HIV)–Seropositive and HIV-Seronegative Individuals: Results From a Nationwide Surveillance Program in France

Olivier Paccoud , Marie Desnos-Ollivier , Sophie Cassaing , Karine Boukris-Sitbon , Alexandre Alanio et al.

Open Forum Infectious Diseases, 2024, 11 (2), pp.ofad658. ⟨10.1093/ofid/ofad658⟩

Article dans une revue hal-04473848v1
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Fumagillin Shortage: How to Treat Enterocytozoon bieneusi Microsporidiosis in Solid Organ Transplant Recipients in 2024?

Cyril Garrouste , Philippe Poirier , Charlotte Uro-Coste , Xavier Iriart , Nassim Kamar et al.

Transplant International, 2024, 37, pp.13518. ⟨10.3389/ti.2024.13518⟩

Article dans une revue hal-04862668v1
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Enterocytozoon bieneusi, a human pathogen

Céline Nourrisson , Rose-Anne Lavergne , Maxime Moniot , Florent Morio , Philippe Poirier

Emerging microbes & infections, 2024, 13 (1), pp.2406276. ⟨10.1080/22221751.2024.2406276⟩

Article dans une revue hal-05332942v1
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Alternative sulphur metabolism in the fungal pathogen Candida parapsilosis

Lisa Lombardi , Letal I Salzberg , Eoin Ó Cinnéide , Caoimhe O’brien , Florent Morio et al.

Nature Communications, 2024, 15, pp.9190. ⟨10.1038/s41467-024-53442-8⟩

Article dans une revue hal-05329629v1

Precise genome editing underlines the distinct contributions of mutations in ERG11 , ERG3 , MRR1 , and TAC1 genes to antifungal resistance in Candida parapsilosis

Sophie Hartuis , Isabelle Ourliac-Garnier , Estelle Robert , Marjorie Albassier , Léa Duchesne et al.

Antimicrobial Agents and Chemotherapy, 2024, 68 (6), ⟨10.1128/aac.00022-24⟩

Article dans une revue hal-04879909v1

Use of the Mucorales qPCR on blood to screen high-risk hematology patients is associated with better survival

Anne-Pauline Bellanger , Gbaguidi-Haore Houssein , Ana Berceanu , Laura Gouzien , Chaima El Machhour et al.

Medical Mycology, 2024, ⟨10.1093/mmy/myae030⟩

Article dans une revue hal-04524410v1
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Laboratory practices for the diagnosis and management of mucormycosis in France, 2024

Laurence Millon , Françoise Botterel , Julie Bonhomme , Stéphane Valot , Philippe Poirier et al.

Journal of Medical Mycology = Journal de Mycologie Médicale, 2024, 34 (4), pp.101520. ⟨10.1016/j.mycmed.2024.101520⟩

Article dans une revue hal-04807226v1

Heteroresistance: a hidden cause behind antifungal prophylaxis failure

Anaïs Hérivaux , Nicolas Papon , Florent Morio

Trends in Microbiology, 2024, 32 (11), pp.1042-1044. ⟨10.1016/j.tim.2024.09.008⟩

Article dans une revue hal-05169891v1
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Should We Reconsider Pneumocystis Pneumonia Presentation and Treatment According to Its Underlying Disease?

Benjamin Gaborit , Romain Lécuyer , Nahéma Issa , Fabrice Camou , Rose‐anne Lavergne et al.

Chest, 2024, pp.S0012-3692(24)00692-5. ⟨10.1016/j.chest.2024.04.038⟩

Article dans une revue inserm-04676363v1
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Plasmodium ovale spp dhfr mutations associated with reduced susceptibility to pyrimethamine in sub-Saharan Africa: a retrospective genetic epidemiology and functional study

Valentin Joste , Romain Coppée , Justine Bailly , Yann Rakotoarivony , Francine Ghislaine Toko Tchokoteu et al.

The Lancet Microbe, 2024, 5 (7), pp.669-678. ⟨10.1016/S2666-5247(24)00054-5⟩

Article dans une revue hal-04675541v1

Features of cryptococcosis among 652 HIV-seronegative individuals in France: a cross-sectional observational study (2005-2020)

Olivier Paccoud , Marie Desnos-Ollivier , Florence Persat , Magalie Demar , Karine Boukris-Sitbon et al.

Clinical Microbiology and Infection, 2024, 30 (7), pp.937-944. ⟨10.1016/j.cmi.2024.03.031⟩

Article dans une revue hal-04528767v1
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Epidemiology and prognostic factors of mucormycosis in France (2012–2022): a cross-sectional study nested in a prospective surveillance programme

Laura Gouzien , Didier Che , Sophie Cassaing , Olivier Lortholary , Valerie Letscher-Bru et al.

The Lancet Regional Health - Europe, 2024, 45, pp.101010. ⟨10.1016/j.lanepe.2024.101010⟩

Article dans une revue hal-04688848v1
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Characteristics and Prognosis Factors of Pneumocystis jirovecii Pneumonia According to Underlying Disease

Romain Lécuyer , Nahéma Issa , Fabrice Camou , Rose‐anne Lavergne , Frederic Gabriel et al.

Chest, 2024, pp.S0012-3692(24)00022-9. ⟨10.1016/j.chest.2024.01.015⟩

Article dans une revue inserm-04446239v1
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Transthyretin amyloid cardiomyopathy in France: A cross-sectional multi-centre study (333 patients)

Thibaud Damy , Erwan Donal , Olivier Lairez , Jean‐christophe Eicher , Mounira Karoubi et al.

Rare, 2024, Rare, 2, pp.100021. ⟨10.1016/j.rare.2024.100021⟩

Article dans une revue hal-04477521v1

Improving Diagnosis of Pulmonary Mucormycosis

Anne Coste , Anne Conrad , Raphaël Porcher , Sylvain Poirée , Pierre Peterlin et al.

Chest, 2023, 164 (5), pp.1097-1107. ⟨10.1016/j.chest.2023.06.039⟩

Article dans une revue hal-04249315v1
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Gradient concentration strip–specific epidemiological cut-off values of antifungal drugs in various yeast species and five prevalent Aspergillus species complexes

Victor Mercier , Valérie Letscher-Bru , Marie-Elisabeth Bougnoux , Laurence Delhaes , Françoise Botterel et al.

Clinical Microbiology and Infection, 2023, 29 (5), pp.652.e9-652.e15. ⟨10.1016/j.cmi.2022.11.030⟩

Article dans une revue hal-03994435v2
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Atovaquone exposure and Pneumocystis jirovecii cytochrome b mutations: French data and review of the literature

Pierre Bonnet , Claire Hoffmann , Nathan Le Nan , Lorenn Bellamy , Gautier Hoarau et al.

Medical Mycology, 2023, 61 (9), ⟨10.1093/mmy/myad095⟩

Article dans une revue hal-04301211v1
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Acquired fluconazole resistance and genetic clustering in Diutina (Candida) catenulata from clinical samples

Céline Nourrisson , Maxime Moniot , Rose-Anne Lavergne , Estelle Robert , Virginie Bonnin et al.

Clinical Microbiology and Infection, 2023, 29 (2), pp.257.e7-257.e11. ⟨10.1016/j.cmi.2022.09.021⟩

Article dans une revue hal-04758751v1
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Invasive fungal diseases in patients with autoimmune diseases: a case series from the French RESSIF network

Simon Galmiche , Benjamin Thoreau , Stéphane Bretagne , Alexandre Alanio , André Paugam et al.

RMD Open, 2023, 9 (3), pp.e003281. ⟨10.1136/rmdopen-2023-003281⟩

Article dans une revue hal-04205646v1

Invasive bone and joint infections from the French Scedosporiosis/lomentosporiosis Observational Study (SOS) cohort: no mortality with long-term antifungal treatment and surgery

Damien Blez , Didier Bronnimann , Blandine Rammaert , Valérie Zeller , Laurence Delhaes et al.

Medical Mycology, 2023, 61 (3), ⟨10.1093/mmy/myad023⟩

Article dans une revue hal-04065351v1
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Draft Genome Sequence of the Fluconazole-Resistant Yarrowia lipolytica Clinical Isolate CBS 18115

Rose-Anne Lavergne , Paul Barbier , Lenha Mobuchon , Atanu Banerjee , Rajendra Prasad et al.

Microbiology Resource Announcements, 2023, 12 (4), pp.2. ⟨10.1128/mra.01260-22⟩

Article dans une revue hal-04827838v1

Epidemiology and Clinical Impact of Respiratory Coinfections at Diagnosis of Pneumocystis jirovecii Pneumonia

Romain Lécuyer , Nahema Issa , Benoit Tessoulin , Rose-Anne Lavergne , Florent Morio et al.

Journal of Infectious Diseases, 2022, 225 (5), pp.868-880. ⟨10.1093/infdis/jiab460⟩

Article dans une revue hal-04809416v1

Draft Genome Sequence of the Fluconazole-Resistant Candida palmioleophila Clinical Isolate CBS 18098

Rose-Anne Lavergne , Paul Barbier , Lenha Mobuchon , Atanu Banerjee , Rajendra Prasad et al.

Mycopathologia, 2022, 188 (1-2), pp.169-171. ⟨10.1007/s11046-022-00682-1⟩

Article dans une revue hal-04809175v1
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Highly Conserved gsc1 Gene of Pneumocystis jirovecii in Patients with or without Prior Exposure to Echinocandins

Pierre Bonnet , Solène Le Gal , Claire Hoffmann , Florent Morio , Fouleymata Diabira et al.

Antimicrobial Agents and Chemotherapy, 2022, 66 (1), ⟨10.1128/AAC.01563-21⟩

Article dans une revue hal-04301232v1
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The Novodiag® Stool parasites assay, an innovative high-plex technique for fast detection of protozoa, helminths and microsporidia in stool samples: a retrospective and prospective study

Sophie Hartuis , Rose-Anne Lavergne , Céline Nourrisson , Jaco Verweij , Guillaume Desoubeaux et al.

Parasite, 2022, 29, pp.1-8. ⟨10.1051/parasite/2022026⟩

Article dans une revue hal-03668002v1
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Fungal infections in mechanically ventilated patients with COVID-19 during the first wave: the French multicentre MYCOVID study

Jean-Pierre Gangneux , Eric Dannaoui , Arnaud Fekkar , Charles-Edouard Luyt , Françoise Botterel et al.

The Lancet Respiratory Medicine, 2022, 10 (2), pp.180-190. ⟨10.1016/s2213-2600(21)00442-2⟩

Article dans une revue inserm-03587204v1
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Immune alveolitis in interstitial lung disease: an attractive cytological profile in immunocompromised patients

Antoine Moui , Stéphanie Dirou , Christine Sagan , Renan Liberge , Claire Defrance et al.

BMC Pulmonary Medicine, 2022, 22 (1), pp.79. ⟨10.1186/s12890-022-01871-w⟩

Article dans une revue inserm-03693149v1
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Evaluation of serum Mucorales PCR for the diagnosis of Mucormycoses: The MODIMUCOR prospective trial

Laurence Millon , Denis Caillot , Ana Berceanu , Stéphane Bretagne , Fanny Lanternier et al.

Clinical Infectious Diseases, 2022, 75 (5), pp.777-785. ⟨10.1093/cid/ciab1066⟩

Article dans une revue hal-03528144v1
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A summary of cryptosporidiosis outbreaks reported in France and overseas departments, 2017–2020

Damien Costa , Romy Razakandrainibe , Louise Basmaciyan , Jérôme Raibaut , Pascal Delaunay et al.

Food and Waterborne Parasitology, 2022, 27, pp.e00160. ⟨10.1016/j.fawpar.2022.e00160⟩

Article dans une revue hal-03859494v1
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Systematic Analysis of Copy Number Variations in the Pathogenic Yeast Candida parapsilosis Identifies a Gene Amplification in <i>RTA3</i> That is Associated with Drug Resistance

Sean A Bergin , Fang Zhao , Adam P Ryan , Carolin A Müller , Conrad A Nieduszynski et al.

mBio, 2022, 13 (5), ⟨10.1128/mbio.01777-22⟩

Article dans une revue hal-04758821v1
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De novo Nanopore Genome Sequencing of the Clinical Diutina catenulata Type-strain CBS565

Sander Boden , Florent Morio , Miaomiao Zhou , Bert Gerrits van den Ende , Ferry Hagen

Mycopathologia, 2022, 187 (4), pp.417-420. ⟨10.1007/s11046-022-00632-x⟩

Article dans une revue hal-04758886v1

Une expulsion bien singulière d'un ver adulte de Loa loa

Arthur Aubry , Charles Hervochon , Marie Chauveau , Marie Denis-Musquer , Fakhri Jeddi et al.

Revue Francophone des Laboratoires, 2022, 538, pp.72-75. ⟨10.1016/S1773-035X(21)00381-6⟩

Article dans une revue hal-03630278v1
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Selecting a multiplex PCR panel for accurate molecular diagnosis of intestinal protists: a comparative study of Allplex ® (Seegene ® ), G-DiaParaTrio (Diagenode ® ), and RIDA ® GENE (R-Biopharm ® ) assays and microscopic examination

Nicolas Argy , Céline Nourrisson , Ahmed Aboubacar , Philippe Poirier , Stéphane Valot et al.

Parasite, 2022, 29, pp.5. ⟨10.1051/parasite/2022003⟩

Article dans une revue hal-03572136v1
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Active Surveillance Program to Increase Awareness on Invasive Fungal Diseases: the French RESSIF Network (2012 to 2018)

Stéphane Bretagne , Karine Sitbon , Marie Desnos-Ollivier , Dea Garcia-Hermoso , Valérie Letscher-Bru et al.

mBio, 2022, 13 (3), pp.e0092022. ⟨10.1128/mbio.00920-22⟩

Article dans une revue hal-03658122v1
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Cryptococcal Meningitis in Kidney Transplant Recipients: A Two-Decade Cohort Study in France

Laurène Tardieu , Gillian Divard , Olivier Lortholary , Anne Scemla , Éric Rondeau et al.

Pathogens, 2022, 11 (6), pp.699. ⟨10.3390/pathogens11060699⟩

Article dans une revue hal-03789427v1
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Impact of TR34/L98H, TR46/Y121F/T289A and TR53 Alterations in Azole-Resistant Aspergillus fumigatus on Sterol Composition and Modifications after In Vitro Exposure to Itraconazole and Voriconazole

Rose-Anne Lavergne , Marjorie Albassier , Jean-Benoît Hardouin , Carlos Alvarez-Moreno , Fabrice Pagniez et al.

Microorganisms, 2022, 10 (1), pp.104. ⟨10.3390/microorganisms10010104⟩

Article dans une revue hal-03778408v1

Collateral consequences of agricultural fungicides on pathogenic yeasts: A One Health perspective to tackle azole resistance

Débora Castelo‐branco , Shawn Lockhart , Yee‐chun Chen , Daniel Santos , Ferry Hagen et al.

Mycoses, 2021, 65, pp.303 - 311. ⟨10.1111/myc.13404⟩

Article dans une revue hal-03630279v1

Serum (1 → 3)‐β‐D‐glucan could be useful to rule out invasive candidiasis in neonates with an adapted cut‐off

Pauline Cliquennois , Pauline Scherdel , Rose‐anne Lavergne , Cyril Flamant , Florent Morio et al.

Acta Paediatrica, 2021, 110 (1), pp.79-84. ⟨10.1111/apa.15321⟩

Article dans une revue hal-03562034v1
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Interlaboratory evaluation of Mucorales PCR assays for testing serum specimens

S Rocchi , E Scherer , C Mengoli , A Alanio , F Botterel et al.

Medical Mycology, 2021, 59 (2), pp.126-138. ⟨10.1093/mmy/myaa036⟩

Article dans une revue hal-03123965v1
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Commercial Simplex and Multiplex PCR Assays for the Detection of Intestinal Parasites Giardia intestinalis, Entamoeba spp., and Cryptosporidium spp.: Comparative Evaluation of Seven Commercial PCR Kits with Routine In-House Simplex PCR Assays

Louise Basmaciyan , Alexandre François , Anne Vincent , Stéphane Valot , Alain Bonnin et al.

Microorganisms, 2021, 9 (11), pp.2325. ⟨10.3390/microorganisms9112325⟩

Article dans une revue hal-03751896v1

Not All Clusters of Pneumocystis Pneumonia Cases are Related to Nosocomial Infections: A Proposal for a Pragmatic Approach to Investigate Possible Clonal Clusters

Gilles Nevez , Florent Morio , Pierre Bonnet , Nathan Le Nan , François-Xavier Blance et al.

Journal of Hospital Infection, 2020, ⟨10.1016/j.jhin.2020.11.022⟩

Article dans une revue hal-03062660v1
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Update on the diagnosis of parasitic and fungal infections

Emilie Fréalle , Stéphane Valot , Renaud Piarroux , Jean Menotti , Laurence Lachaud et al.

Annales de Biologie Clinique, 2020, 78 (3), pp.299-313. ⟨10.1684/abc.2020.1554⟩

Article dans une revue hal-03610929v1

A proposal for pragmatic investigation of possible clonal clusters of pneumocystis pneumonia cases

G. Nevez , Florent Morio , P. Bonnet , N. Le Nan , F.-X. Blanc et al.

Journal of Hospital Infection, 2020, 108, pp.215-216. ⟨10.1016/j.jhin.2020.11.022⟩

Article dans une revue hal-03790509v1
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Hormographiella aspergillata: an emerging basidiomycete in the clinical setting? A case report and literature review

Maxime Moniot , Rose‐anne Lavergne , Thomas Morel , Romain Guieze , Florent Morio et al.

BMC Infectious Diseases, 2020, 20 (1), pp.945. ⟨10.1186/s12879-020-05679-z⟩

Article dans une revue hal-03945682v2
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The CRISPR toolbox in medical mycology: State of the art and perspectives

Florent Morio , Lisa Lombardi , Geraldine Butler

PLoS Pathogens, 2020, 16 (1), pp.e1008201. ⟨10.1371/journal.ppat.1008201⟩

Article dans une revue hal-03842369v2
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Dear medical mycologists, it is time to look outside the box

Florent Morio

FEMS Yeast Research, 2020, 20 (1), ⟨10.1093/femsyr/foz080⟩

Article dans une revue hal-03842042v2

Draft Genome Sequence of the Yeast Kazachstania telluris CBS 16338 Isolated from Forest Soil in Ireland

Florent Morio , Caoimhe O’brien , Geraldine Butler

Mycopathologia, 2020, 185 (3), pp.587-590. ⟨10.1007/s11046-020-00449-6⟩

Article dans une revue hal-03842559v1
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Signaling Pathways Governing the Caspofungin Paradoxical Effect in Aspergillus fumigatus

Nicolas Papon , Florent Morio , Dominique Sanglard

mBio, 2020, 11 (4), pp.1816-20. ⟨10.1128/mBio.01816-20⟩

Article dans une revue hal-02942844v1
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Species Distribution and Comparison between EUCAST and Gradient Concentration Strips Methods for Antifungal Susceptibility Testing of 112 Aspergillus Section Nigri Isolates

B. Carrara , R. Richards , S. Imbert , Florent Morio , Milène Sasso et al.

Antimicrobial Agents and Chemotherapy, 2020, 64 (7), ⟨10.1128/AAC.02510-19⟩

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Comparison of MultiLocus Sequence Typing (MLST) and Microsatellite Length Polymorphism (MLP) for Pneumocystis jirovecii genotyping

Maud Gits-Muselli , Pascal Campagne , Marie Desnos-Ollivier , Patrice Le Pape , Stéphane Bretagne et al.

Computational and Structural Biotechnology Journal, 2020, 18, pp.2890-2896. ⟨10.1016/j.csbj.2020.10.005⟩

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Ibrutinib, a Bruton's tyrosine kinase inhibitor, a new risk factor for cryptococcosis

Julia Brochard , Florent Morio , Julien Mahe , Patrice Le Pape , T. Guimard et al.

Médecine et Maladies Infectieuses (1971-2020), 2020, 50, pp.742 - 745. ⟨10.1016/j.medmal.2020.07.005⟩

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Scedosporiosis/lomentosporiosis observational study (SOS): Clinical significance of Scedosporium species identification

Didier Bronnimann , Dea Garcia-Hermoso , Françoise Dromer , Fanny Lanternier , Laurence Maulin et al.

Medical Mycology, 2020, 59 (5), pp.486 - 497. ⟨10.1093/mmy/myaa086⟩

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Invasive aspergillosis due to Aspergillus section Usti: a multicenter retrospective study

Emmanouil Glampedakis , Sophie Cassaing , Arnaud Fekkar , Eric Dannaoui , Marie-Elisabeth Bougnoux et al.

Clinical Infectious Diseases, 2020, 72, pp.1379-1385. ⟨10.1093/cid/ciaa230⟩

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Prevalence, geographic risk factor, and development of a standardized protocol for fungal isolation in cystic fibrosis: Results from the international prospective study “MFIP”

Laurence Delhaes , Kada Touati , Muriel Cornet , Rafael Cantón , Françoise Botterel et al.

Journal of Cystic Fibrosis, 2019, 18 (2), pp.212-220. ⟨10.1016/j.jcf.2018.10.001⟩

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Rapid diagnostic tests relying on antigen detection from stool as an efficient point of care testing strategy for giardiasis and cryptosporidiosis? Evaluation of a new immunochromatographic duplex assay

Adeline Goudal , Adrien Laude , Stéphane Valot , Guillaume Desoubeaux , Nicolas Argy et al.

Diagnostic Microbiology and Infectious Disease, 2019, 93 (1), pp.33-36. ⟨10.1016/j.diagmicrobio.2018.07.012⟩

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Fungicide-driven alterations in azole-resistant Aspergillus fumigatus are related to vegetable crops in Colombia, South America

Carlos Alvarez-Moreno , Rose-Anne Lavergne , Ferry Hagen , Florent Morio , Jacques Meis et al.

Mycologia, 2019, 111 (2), pp.217-224. ⟨10.1080/00275514.2018.1557796⟩

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One year prospective survey of azole resistance in Aspergillus fumigatus at a French cystic fibrosis reference centre: prevalence and mechanisms of resistance

Rose-Anne Lavergne , Florent Morio , I. Danner-Boucher , D. Horeau-Langlard , V. David et al.

Journal of Antimicrobial Chemotherapy, 2019, 74 (7), pp.1884-1889. ⟨10.1093/jac/dkz144⟩

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Comparison between MALDI-TOF MS and MicroScan in the identification of emerging and multidrug resistant yeasts in a fourth-level hospital in Bogotá, Colombia

Andrés Ceballos-Garzón , Gloria Cortes , Florent Morio , Edna Zamora-Cruz , Melva Linares et al.

BMC Microbiology, 2019, 19 (1), pp.106. ⟨10.1186/s12866-019-1482-y⟩

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Precise genome editing using a CRISPR-Cas9 method highlights the role of CoERG11 amino acid substitutions in azole resistance in Candida orthopsilosis

Florent Morio , Lisa Lombardi , Ulrike Binder , Cédric Logé , Estelle Robert et al.

Journal of Antimicrobial Chemotherapy, 2019, 74 (8), pp.2230-2238. ⟨10.1093/jac/dkz204⟩

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Genotyping Approach for Potential Common Source of Enterocytozoon bieneusi Infection in Hematology Unit

Guillaume Desoubeaux , Céline Nourrisson , Maxime Moniot , Marie-Alix de Kyvon , Virginie Bonnin et al.

Emerging Infectious Diseases, 2019, 25 (9), pp.1625-1631. ⟨10.3201/eid2509.190311⟩

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Assessment of the first commercial multiplex PCR kit (ParaGENIE Crypto-Micro Real-Time PCR) for the detection of Cryptosporidium spp., Enterocytozoon bieneusi, and Encephalitozoon intestinalis from fecal samples

Florent Morio , Philippe Poirier , Yohann Le Govic , Adrien Laude , Stephane Valot et al.

Diagnostic Microbiology and Infectious Disease, 2019, 95 (1), pp.34-37. ⟨10.1016/j.diagmicrobio.2019.04.004⟩

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Human cryptosporidiosis in immunodeficient patients in France (2015–2017)

Damien Costa , Romy Razakandrainibe , Marc Sautour , Stéphane Valot , Louise Basmaciyan et al.

Experimental Parasitology, 2018, 192, pp.108-112. ⟨10.1016/j.exppara.2018.08.001⟩

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Evaluation of a new multiplex PCR assay (ParaGENIE G-Amoeba Real-Time PCR kit) targeting Giardia intestinalis, Entamoeba histolytica and Entamoeba dispar/Entamoeba moshkovskii from stool specimens: evidence for the limited performances of microscopy-based approach for amoeba species identification

Florent Morio , S. Valot , A. Laude , Guillaume Desoubeaux , N. Argy et al.

Clinical Microbiology and Infection, 2018, 24 (11), pp.1205-1209. ⟨10.1016/j.cmi.2018.02.007⟩

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Azole Resistance in Aspergillus fumigatus in Patients with Cystic Fibrosis: A Matter of Concern?

A. Hamprecht , Florent Morio , O. Bader , Patrice Le Pape , J. Steinmann et al.

Mycopathologia, 2018, 183 (1), pp.151-160. ⟨10.1007/s11046-017-0162-4⟩

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First report of sporadic cases of Candida auris in Colombia

Claudia Parra-Giraldo , Sandra Valderrama , Gloria Cortes-Fraile , Javier Garzón , Beatriz Ariza et al.

International Journal of Infectious Diseases, 2018, 69, pp.63-67. ⟨10.1016/j.ijid.2018.01.034⟩

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PCR-based detection of Aspergillus fumigatus and absence of azole resistance due to TR 34 /L98H in a french multicenter cohort of 137 patients with fungal rhinosinusitis

Florent Morio , Eric Dannaoui , Taieb Chouaki , Estelle Cateau , Olivier Malard et al.

Mycoses, 2018, 61 (1), pp.30 - 34. ⟨10.1111/myc.12702⟩

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Molecular basis of antifungal drug resistance in yeasts

Florent Morio , Rasmus Hare Jensen , Patrice Le Pape , Maiken Cavling Arendrup

International Journal of Antimicrobial Agents, 2017, 50 (5), pp.599-606. ⟨10.1016/j.ijantimicag.2017.05.012⟩

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A misleading false-negative result of Pneumocystis real-time PCR assay due to a rare punctual mutation: A French multicenter study.

Solène Le Gal , Florence Robert-Gangneux , Yann Pepino , Sorya Belaz , Céline Damiani et al.

Medical Mycology, 2017, 55 (2), pp.180-184. ⟨10.1093/mmy/myw051⟩

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Thermothelomyces thermophila human infections

C. Nourrisson , D. Garcia-Hermoso , Florent Morio , C. Kauffmann-Lacroix , N. Berrette et al.

Clinical Microbiology and Infection, 2017, 23 (5), pp.338 - 341. ⟨10.1016/j.cmi.2016.10.025⟩

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Home Environment as a Source of Life-Threatening Azole-Resistant Aspergillus fumigatus in Immunocompromised Patients

Rose-Anne Lavergne , Taieb Chouaki , Ferry Hagen , Benedicte Toublanc , Herve Dupont et al.

Clinical Infectious Diseases, 2017, 64 (1), pp.76-78. ⟨10.1093/cid/ciw664⟩

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Diversity of Pneumocystis jirovecii Across Europe: A Multicentre Observational Study

Alexandre Alanio , Maud Gits-Muselli , Nicolas Guigue , Marie Desnos-Ollivier , Enrique Calderon et al.

EBioMedicine, 2017, 22, pp.155-163. ⟨10.1016/j.ebiom.2017.06.027⟩

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Epidemiology, risk factor, species distribution, antifungal resistance and outcome of Candidemia at a single French hospital: a 7-year study

Laurent Tadec , Jean-Philippe Talarmin , Thomas Gastinne , Cédric Bretonnière , Michel Miegeville et al.

Mycoses, 2016, 59 (5), pp.296-303. ⟨10.1111/myc.12470⟩

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Answer to May 2016 Photo Quiz

Florent Morio , Sébastien Barbarot , Samuel Pineau , Hélène Aubert , Dea Garcia-Hermoso et al.

Journal of Clinical Microbiology, 2016, 54 (5), pp.1409-1409. ⟨10.1128/JCM.01250-14⟩

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Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France

Dima El Safadi , Amandine Cian , Céline Nourrisson , Bruno Pereira , Christelle Morelle et al.

BMC Infectious Diseases, 2016, 16 (1), pp.451. ⟨10.1186/s12879-016-1776-8⟩

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Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota

Christophe Audebert , Gaël Even , Amandine Cian , Dima El Safadi , Gabriela Certad et al.

Scientific Reports, 2016, 6, pp.25255. ⟨10.1038/srep25255⟩

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Epidemiological Outbreaks of Pneumocystis jirovecii Pneumonia Are Not Limited to Kidney Transplant Recipients: Genotyping Confirms Common Source of Transmission in a Liver Transplantation Unit

Guillaume Desoubeaux , Manon Dominique , Florent Morio , Rose-Anne Thepault , Claire Franck-Martel et al.

Journal of Clinical Microbiology, 2016, ⟨10.1128/JCM.00133-16⟩

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Identification of cryptic Candida species by MALDI-TOF mass spectrometry, not all MALDI-TOF systems are the same: focus on the C. parapsilosis species complex

Marion Haas , Frederic Grenouillet , Sophie Loubersac , Beatriz Ariza , Line Pepin-Puget et al.

Diagnostic Microbiology and Infectious Disease, 2016, 86 (4), pp.385 - 386. ⟨10.1016/j.diagmicrobio.2016.08.028⟩

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Early diagnosis and monitoring of mucormycosis by detection of circulating DNA in serum: retrospective analysis of 44 cases collected through the French Surveillance Network of Invasive Fungal Infections (RESSIF)

L. Millon , R. Herbrecht , F. Grenouillet , Florent Morio , Alexandre Alanio et al.

Clinical Microbiology and Infection, 2016, 22 (9), pp.810.e1--810.e8. ⟨10.1016/j.cmi.2015.12.006⟩

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Is real-time PCR-based diagnosis similar in performance to routine parasitological examination for the identification of Giardia intestinalis , Cryptosporidium parvum / Cryptosporidium hominis and Entamoeba histolytica from stool samples? Evaluation of a new commercial multiplex PCR assay and literature review

A. Laude , S. Valot , Guillaume Desoubeaux , N. Argy , C. Nourrisson et al.

Clinical Microbiology and Infection, 2016, 22 (2), pp.190.e1-190.e8. ⟨10.1016/j.cmi.2015.10.019⟩

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First Description of Azole-Resistant Aspergillus fumigatus Due to TR 46 /Y121F/T289A Mutation in France

Rose-Anne Lavergne , Florent Morio , Loïc Favennec , Stéphane Dominique , Jacques Meis et al.

Antimicrobial Agents and Chemotherapy, 2015, 59 (7), pp.4331-4335. ⟨10.1128/AAC.00127-15⟩

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Evaluation of two matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF MS) systems for the identification of Candida species.

C Lacroix , A Gicquel , B Sendid , J Meyer , I Accoceberry et al.

Clinical Microbiology and Infection, 2014, 20, pp.153-8. ⟨10.1111/1469-0691.12210⟩

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Longitudinal study assessing the return of chloroquine susceptibility of Plasmodium falciparum in isolates from travellers returning from West and Central Africa, 2000–2011

Dima El Safadi , Amandine Cian , Céline Nourrisson , Bruno Pereira , Christelle Morelle et al.

Malaria Journal, 2013, 12 (1), pp.35. ⟨10.1186/1475-2875-12-35⟩

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Deciphering azole resistance mechanisms with a focus on transcription factor-encoding genes TAC1, MRR1 and UPC2 in a set of fluconazole-resistant clinical isolates of Candida albicans

Florent Morio , Fabrice Pagniez , Myriam Besse , Françoise Gay-Andrieu , Michel Miegeville et al.

International Journal of Antimicrobial Agents, 2013, 42 (5), pp.410-415. ⟨10.1016/j.ijantimicag.2013.07.013⟩

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Successful treatment with fumagillin of the first pediatric case of digestive microsporidiosis in a liver-kidney transplant

Guillaume Desoubeaux , Z Maakaroun-Vermesse , C Lier , E Bailly , Florent Morio et al.

Transplant Infectious Disease, 2013, ⟨10.1111/tid.12158⟩

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Phaeohyphomycosis due to Exophiala xenobiotica as a cause of fungal arthritis in an HIV-infected patient

Florent Morio , Jean-Yves Le Berre , Dea Garcia-Hermoso , Mohammad Javad Najafzadeh , Sybren G. de Hoog et al.

Medical Mycology, 2012, 50 (5), pp.513-517. ⟨10.3109/13693786.2011.648218⟩

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Amino acid substitutions in the Candida albicans sterol 5,6-desaturase (Erg3p) confer azole resistance: characterization of two novel mutants with impaired virulence

Florent Morio , Fabrice Pagniez , C. Lacroix , Michel Miegeville , Patrice Le Pape

Journal of Antimicrobial Chemotherapy, 2012, 67 (9), pp.2131-2138. ⟨10.1093/jac/dks186⟩

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High prevalence of triazole resistance in Aspergillus fumigatus, especially mediated by TR/L98H, in a French cohort of patients with cystic fibrosis

Florent Morio , Guillaume Ghislain Aubin , Isabelle Danner-Boucher , Alain Haloun , Emilie Sacchetto et al.

Journal of Antimicrobial Chemotherapy, 2012, 67 (8), pp.1870-1873. ⟨10.1093/jac/dks160⟩

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Fatal Invasive Infection with Fungemia Due to Microascus cirrosus after Heart and Lung Transplantation in a Patient with Cystic Fibrosis

Charline Miossec , Florent Morio , Thierry Lepoivre , Patrice Le Pape , Dea Garcia-Hermoso et al.

Journal of Clinical Microbiology, 2011, 49 (7), pp.2743-2747. ⟨10.1128/JCM.00127-11⟩

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Design, Synthesis, and in vitro Antifungal Activity of 1-[(4-Substituted-benzyl)methylamino]-2-(2,4-difluorophenyl)-3-(1H-1,2,4-triazol-1-yl)propan-2-ols

Rémi Guillon , Fabrice Pagniez , Francis Giraud , Damien Crépin , Carine Picot et al.

ChemMedChem, 2011, 6 (5), pp.816 - 825. ⟨10.1002/cmdc.201000530⟩

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Disseminated Scedosporium/Pseudallescheria Infection after Double-Lung Transplantation in Patients with Cystic Fibrosis

Florent Morio , Delphine Horeau-Langlard , Françoise Gay-Andrieu , Jean-Philippe Talarmin , Alain Haloun et al.

Journal of Clinical Microbiology, 2010, 48 (5), pp.1978 - 1982. ⟨10.1128/JCM.01840-09⟩

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Screening for amino acid substitutions in the Candida albicans Erg11 protein of azole-susceptible and azole-resistant clinical isolates: new substitutions and a review of the literature

Florent Morio , Cédric Logé , Bernard Besse , Christophe Hennequin , Patrice Le Pape

Diagnostic Microbiology and Infectious Disease, 2010, 66 (4), pp.373-384. ⟨10.1016/j.diagmicrobio.2009.11.006⟩

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Dialister micraerophilus sp. nov. and Dialister propionicifaciens sp. nov., isolated from human clinical samples

Estelle Jumas-Bilak , Hélène Jean-Pierre , Jean-Philippe Carlier , Corinne Teyssier , Kathryn Bernard et al.

International Journal of Systematic and Evolutionary Microbiology, 2005, 55 (6), pp.2471-2478. ⟨10.1099/ijs.0.63715-0⟩

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