florent morio

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The diagnosis of mucormycosis by PCR in patients at risk: a systematic review and meta-analysis

Lottie Brown , Lena Tschiderer , Alexandre Alanio , Rosemary Barnes , Sharon C-A Chen et al.
EClinicalMedicine, 2025, 81, pp.103115. ⟨10.1016/j.eclinm.2025.103115⟩
Article dans une revue hal-05014057 v1

Epidemiology and Prognostic Factors Associated With Mold-Positive Blood Cultures: 10-Year Data From a French Prospective Surveillance Program (2012–2022)

Thiziri Tala-Ighil , Dea Garcia-Hermoso , Frédéric Dalle , Sophie Cassaing , Juliette Guitard et al.
Clinical Infectious Diseases, 2025, 80 (3), pp.529-539. ⟨10.1093/cid/ciae594⟩
Article dans une revue pasteur-04882051 v1

Laboratory practices for the diagnosis and management of mucormycosis in France, 2024

Laurence Millon , Françoise Botterel , Julie Bonhomme , Stéphane Valot , Philippe Poirier et al.
Journal of Medical Mycology = Journal de Mycologie Médicale, 2024, 34 (4), pp.101520. ⟨10.1016/j.mycmed.2024.101520⟩
Article dans une revue hal-05025095 v1
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The epidemiology of fungal infections in transplant patients

Dorra Elhaj Mahmoud , Anaïs Herivaux , Florent Morio , Benoit Briard , Cécile Vigneau et al.
Biomedical journal, 2024, 47 (3), pp.100719. ⟨10.1016/j.bj.2024.100719⟩
Article dans une revue hal-04536323 v1
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Fumagillin Shortage: How to Treat Enterocytozoon bieneusi Microsporidiosis in Solid Organ Transplant Recipients in 2024?

Cyril Garrouste , Philippe Poirier , Charlotte Uro-Coste , Xavier Iriart , Nassim Kamar et al.
Transplant International, 2024, 37, pp.13518. ⟨10.3389/ti.2024.13518⟩
Article dans une revue hal-04862668 v1
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Cryptococcus neoformans Infections Differ Among Human Immunodeficiency Virus (HIV)–Seropositive and HIV-Seronegative Individuals: Results From a Nationwide Surveillance Program in France

Olivier Paccoud , Marie Desnos-Ollivier , Sophie Cassaing , Karine Boukris-Sitbon , Alexandre Alanio et al.
Open Forum Infectious Diseases, 2024, 11 (2), pp.ofad658. ⟨10.1093/ofid/ofad658⟩
Article dans une revue hal-04473848 v1

Precise genome editing underlines the distinct contributions of mutations in ERG11 , ERG3 , MRR1 , and TAC1 genes to antifungal resistance in Candida parapsilosis

Sophie Hartuis , Isabelle Ourliac-Garnier , Estelle Robert , Marjorie Albassier , Léa Duchesne et al.
Antimicrobial Agents and Chemotherapy, 2024, 68 (6), ⟨10.1128/aac.00022-24⟩
Article dans une revue hal-04879909 v1

Use of the Mucorales qPCR on blood to screen high-risk hematology patients is associated with better survival

Anne-Pauline Bellanger , Gbaguidi-Haore Houssein , Ana Berceanu , Laura Gouzien , Chaima El Machhour et al.
Medical Mycology, 2024, ⟨10.1093/mmy/myae030⟩
Article dans une revue hal-04524410 v1

Epidemiology and prognostic factors of mucormycosis in France (2012–2022): a cross-sectional study nested in a prospective surveillance programme

Laura Gouzien , Didier Che , Sophie Cassaing , Olivier Lortholary , Valérie Letscher-Bru et al.
The Lancet Regional Health - Europe, 2024, 45, pp.101010. ⟨10.1016/j.lanepe.2024.101010⟩
Article dans une revue hal-05025069 v1

Heteroresistance: a hidden cause behind antifungal prophylaxis failure

Anaïs Hérivaux , Nicolas Papon , Florent Morio
Trends in Microbiology, 2024, 32 (11), pp.1042-1044. ⟨10.1016/j.tim.2024.09.008⟩
Article dans une revue hal-04805104 v1
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Laboratory practices for the diagnosis and management of mucormycosis in France, 2024

Laurence Millon , Françoise Botterel , Julie Bonhomme , Stéphane Valot , Philippe Poirier et al.
Journal of Medical Mycology = Journal de Mycologie Médicale, 2024, 34 (4), pp.101520. ⟨10.1016/j.mycmed.2024.101520⟩
Article dans une revue hal-04807226 v1
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Should We Reconsider Pneumocystis Pneumonia Presentation and Treatment According to Its Underlying Disease?

Benjamin Gaborit , Romain Lécuyer , Nahéma Issa , Fabrice Camou , Rose‐anne Lavergne et al.
Chest, 2024, pp.S0012-3692(24)00692-5. ⟨10.1016/j.chest.2024.04.038⟩
Article dans une revue inserm-04676363 v1
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Interlaboratory assays from the fungal PCR Initiative and the Modimucor Study Group to improve qPCR detection of Mucorales DNA in serum: one more step toward standardization

Steffi Rocchi , Emeline Scherer , P. Lewis White , Audrey Guitton , Alexandre Alanio et al.
Journal of Clinical Microbiology, In press, pp.e0152524. ⟨10.1128/jcm.01525-24⟩
Article dans une revue hal-04862485 v1
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Epidemiology and prognostic factors of mucormycosis in France (2012–2022): a cross-sectional study nested in a prospective surveillance programme

Laura Gouzien , Didier Che , Sophie Cassaing , Olivier Lortholary , Valerie Letscher-Bru et al.
The Lancet Regional Health - Europe, 2024, 45, pp.101010. ⟨10.1016/j.lanepe.2024.101010⟩
Article dans une revue hal-04688848 v1

Features of cryptococcosis among 652 HIV-seronegative individuals in France: a cross-sectional observational study (2005-2020)

Olivier Paccoud , Marie Desnos-Ollivier , Florence Persat , Magalie Demar , Karine Boukris-Sitbon et al.
Clinical Microbiology and Infection, 2024, 30 (7), pp.937-944. ⟨10.1016/j.cmi.2024.03.031⟩
Article dans une revue hal-04528767 v1
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Plasmodium ovale spp dhfr mutations associated with reduced susceptibility to pyrimethamine in sub-Saharan Africa: a retrospective genetic epidemiology and functional study

Valentin Joste , Romain Coppée , Justine Bailly , Yann Rakotoarivony , Francine Ghislaine Toko Tchokoteu et al.
The Lancet Microbe, 2024, 5 (7), pp.669-678. ⟨10.1016/S2666-5247(24)00054-5⟩
Article dans une revue hal-04675541 v1
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Transthyretin amyloid cardiomyopathy in France: A cross-sectional multi-centre study (333 patients)

Thibaud Damy , Erwan Donal , Olivier Lairez , Jean‐christophe Eicher , Mounira Karoubi et al.
Rare, 2024, Rare, 2, pp.100021. ⟨10.1016/j.rare.2024.100021⟩
Article dans une revue hal-04477521 v1
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Characteristics and Prognosis Factors of Pneumocystis jirovecii Pneumonia According to Underlying Disease

Romain Lécuyer , Nahéma Issa , Fabrice Camou , Rose‐anne Lavergne , Frederic Gabriel et al.
Chest, 2024, pp.S0012-3692(24)00022-9. ⟨10.1016/j.chest.2024.01.015⟩
Article dans une revue inserm-04446239 v1

Improving Diagnosis of Pulmonary Mucormycosis

Anne Coste , Anne Conrad , Raphaël Porcher , Sylvain Poirée , Pierre Peterlin et al.
Chest, 2023, 164 (5), pp.1097-1107. ⟨10.1016/j.chest.2023.06.039⟩
Article dans une revue hal-04249315 v1
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Acquired fluconazole resistance and genetic clustering in Diutina (Candida) catenulata from clinical samples

Céline Nourrisson , Maxime Moniot , Rose-Anne Lavergne , Estelle Robert , Virginie Bonnin et al.
Clinical Microbiology and Infection, 2023, 29 (2), pp.257.e7-257.e11. ⟨10.1016/j.cmi.2022.09.021⟩
Article dans une revue hal-04758751 v1
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Invasive fungal diseases in patients with autoimmune diseases: a case series from the French RESSIF network

Simon Galmiche , Benjamin Thoreau , Stéphane Bretagne , Alexandre Alanio , André Paugam et al.
RMD Open, 2023, 9 (3), pp.e003281. ⟨10.1136/rmdopen-2023-003281⟩
Article dans une revue hal-04205646 v1
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Atovaquone exposure and Pneumocystis jirovecii cytochrome b mutations: French data and review of the literature

Pierre Bonnet , Claire Hoffmann , Nathan Le Nan , Lorenn Bellamy , Gautier Hoarau et al.
Medical Mycology, 2023, 61 (9), ⟨10.1093/mmy/myad095⟩
Article dans une revue hal-04301211 v1

Invasive bone and joint infections from the French Scedosporiosis/lomentosporiosis Observational Study (SOS) cohort: no mortality with long-term antifungal treatment and surgery

Damien Blez , Didier Bronnimann , Blandine Rammaert , Valérie Zeller , Laurence Delhaes et al.
Medical Mycology, 2023, 61 (3), ⟨10.1093/mmy/myad023⟩
Article dans une revue hal-04065351 v1
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Draft Genome Sequence of the Fluconazole-Resistant Yarrowia lipolytica Clinical Isolate CBS 18115

Rose-Anne Lavergne , Paul Barbier , Lenha Mobuchon , Atanu Banerjee , Rajendra Prasad et al.
Microbiology Resource Announcements, 2023, 12 (4), pp.2. ⟨10.1128/mra.01260-22⟩
Article dans une revue hal-04827838 v1

Gradient concentration strip–specific epidemiological cut-off values of antifungal drugs in various yeast species and five prevalent Aspergillus species complexes

Victor Mercier , Valérie Letscher-Bru , Marie-Elisabeth Bougnoux , Laurence Delhaes , Françoise Botterel et al.
Clinical Microbiology and Infection, 2023, 29 (5), pp.652.e9-652.e15. ⟨10.1016/j.cmi.2022.11.030⟩
Article dans une revue hal-03994435 v2

Evaluation of Serum Mucorales Polymerase Chain Reaction (PCR) for the Diagnosis of Mucormycoses: The MODIMUCOR Prospective Trial

Laurence Millon , Denis Caillot , Ana Berceanu , Stéphane Bretagne , Fanny Lanternier et al.
Clinical Infectious Diseases, 2022, ⟨10.1093/cid/ciab1066⟩
Article dans une revue hal-03630277 v1

Epidemiology and Clinical Impact of Respiratory Coinfections at Diagnosis of Pneumocystis jirovecii Pneumonia

Romain Lécuyer , Nahema Issa , Benoit Tessoulin , Rose-Anne Lavergne , Florent Morio et al.
Journal of Infectious Diseases, 2022, 225 (5), pp.868-880. ⟨10.1093/infdis/jiab460⟩
Article dans une revue hal-04809416 v1
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Highly Conserved gsc1 Gene of Pneumocystis jirovecii in Patients with or without Prior Exposure to Echinocandins

Pierre Bonnet , Solène Le Gal , Claire Hoffmann , Florent Morio , Fouleymata Diabira et al.
Antimicrobial Agents and Chemotherapy, 2022, 66 (1), ⟨10.1128/AAC.01563-21⟩
Article dans une revue hal-04301232 v1
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Fungal infections in mechanically ventilated patients with COVID-19 during the first wave: the French multicentre MYCOVID study

Jean-Pierre Gangneux , Eric Dannaoui , Arnaud Fekkar , Charles-Edouard Luyt , Françoise Botterel et al.
The Lancet Respiratory Medicine, 2022, 10 (2), pp.180-190. ⟨10.1016/s2213-2600(21)00442-2⟩
Article dans une revue inserm-03587204 v1

Draft Genome Sequence of the Fluconazole-Resistant Candida palmioleophila Clinical Isolate CBS 18098

Rose-Anne Lavergne , Paul Barbier , Lenha Mobuchon , Atanu Banerjee , Rajendra Prasad et al.
Mycopathologia, 2022, 188 (1-2), pp.169-171. ⟨10.1007/s11046-022-00682-1⟩
Article dans une revue hal-04809175 v1
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The Novodiag® Stool parasites assay, an innovative high-plex technique for fast detection of protozoa, helminths and microsporidia in stool samples: a retrospective and prospective study

Sophie Hartuis , Rose-Anne Lavergne , Céline Nourrisson , Jaco Verweij , Guillaume Desoubeaux et al.
Parasite, 2022, 29, pp.1-8. ⟨10.1051/parasite/2022026⟩
Article dans une revue hal-03668002 v1
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Immune alveolitis in interstitial lung disease: an attractive cytological profile in immunocompromised patients

Antoine Moui , Stéphanie Dirou , Christine Sagan , Renan Liberge , Claire Defrance et al.
BMC Pulmonary Medicine, 2022, 22 (1), pp.79. ⟨10.1186/s12890-022-01871-w⟩
Article dans une revue inserm-03693149 v1
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Systematic Analysis of Copy Number Variations in the Pathogenic Yeast Candida parapsilosis Identifies a Gene Amplification in <i>RTA3</i> That is Associated with Drug Resistance

Sean A Bergin , Fang Zhao , Adam P Ryan , Carolin A Müller , Conrad A Nieduszynski et al.
mBio, 2022, 13 (5), ⟨10.1128/mbio.01777-22⟩
Article dans une revue hal-04758821 v1
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Evaluation of serum Mucorales PCR for the diagnosis of Mucormycoses: The MODIMUCOR prospective trial

Laurence Millon , Denis Caillot , Ana Berceanu , Stéphane Bretagne , Fanny Lanternier et al.
Clinical Infectious Diseases, 2022, 75 (5), pp.777-785. ⟨10.1093/cid/ciab1066⟩
Article dans une revue hal-03528144 v1
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A summary of cryptosporidiosis outbreaks reported in France and overseas departments, 2017–2020

Damien Costa , Romy Razakandrainibe , Louise Basmaciyan , Jérôme Raibaut , Pascal Delaunay et al.
Food and Waterborne Parasitology, 2022, 27, pp.e00160. ⟨10.1016/j.fawpar.2022.e00160⟩
Article dans une revue hal-03859494 v1
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Active Surveillance Program to Increase Awareness on Invasive Fungal Diseases: the French RESSIF Network (2012 to 2018)

Stéphane Bretagne , Karine Sitbon , Marie Desnos-Ollivier , Dea Garcia-Hermoso , Valérie Letscher-Bru et al.
mBio, 2022, 13 (3), pp.e0092022. ⟨10.1128/mbio.00920-22⟩
Article dans une revue hal-03658122 v1
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Selecting a multiplex PCR panel for accurate molecular diagnosis of intestinal protists: a comparative study of Allplex ® (Seegene ® ), G-DiaParaTrio (Diagenode ® ), and RIDA ® GENE (R-Biopharm ® ) assays and microscopic examination

Nicolas Argy , Céline Nourrisson , Ahmed Aboubacar , Philippe Poirier , Stéphane Valot et al.
Parasite, 2022, 29, pp.5. ⟨10.1051/parasite/2022003⟩
Article dans une revue hal-03572136 v1
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De novo Nanopore Genome Sequencing of the Clinical Diutina catenulata Type-strain CBS565

Sander Boden , Florent Morio , Miaomiao Zhou , Bert Gerrits van den Ende , Ferry Hagen
Mycopathologia, 2022, 187 (4), pp.417-420. ⟨10.1007/s11046-022-00632-x⟩
Article dans une revue hal-04758886 v1

Une expulsion bien singulière d'un ver adulte de Loa loa

Arthur Aubry , Charles Hervochon , Marie Chauveau , Marie Denis-Musquer , Fakhri Jeddi et al.
Revue Francophone des Laboratoires, 2022, 538, pp.72-75. ⟨10.1016/S1773-035X(21)00381-6⟩
Article dans une revue hal-03630278 v1
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Impact of TR34/L98H, TR46/Y121F/T289A and TR53 Alterations in Azole-Resistant Aspergillus fumigatus on Sterol Composition and Modifications after In Vitro Exposure to Itraconazole and Voriconazole

Rose-Anne Lavergne , Marjorie Albassier , Jean-Benoît Hardouin , Carlos Alvarez-Moreno , Fabrice Pagniez et al.
Microorganisms, 2022, 10 (1), pp.104. ⟨10.3390/microorganisms10010104⟩
Article dans une revue hal-03778408 v1
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Cryptococcal Meningitis in Kidney Transplant Recipients: A Two-Decade Cohort Study in France

Laurène Tardieu , Gillian Divard , Olivier Lortholary , Anne Scemla , Éric Rondeau et al.
Pathogens, 2022, 11 (6), pp.699. ⟨10.3390/pathogens11060699⟩
Article dans une revue hal-03789427 v1

Epidemiological and clinical study of microsporidiosis in French kidney transplant recipients from 2005 to 2019: TRANS‐SPORE registry

Clément Dumond , Florence Aulagnon , Isabelle Etienne , Anne‐elisabeth Heng , Marie‐elisabeth Bougnoux et al.
Transplant Infectious Disease, 2021, 23 (5), pp.e13708. ⟨10.1111/tid.13708⟩
Article dans une revue hal-03419373 v1

Collateral consequences of agricultural fungicides on pathogenic yeasts: A One Health perspective to tackle azole resistance

Débora Castelo‐branco , Shawn Lockhart , Yee‐chun Chen , Daniel Santos , Ferry Hagen et al.
Mycoses, 2021, 65, pp.303 - 311. ⟨10.1111/myc.13404⟩
Article dans une revue hal-03630279 v1

Serum (1 → 3)‐β‐D‐glucan could be useful to rule out invasive candidiasis in neonates with an adapted cut‐off

Pauline Cliquennois , Pauline Scherdel , Rose‐anne Lavergne , Cyril Flamant , Florent Morio et al.
Acta Paediatrica, 2021, 110 (1), pp.79-84. ⟨10.1111/apa.15321⟩
Article dans une revue hal-03562034 v1
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Interlaboratory evaluation of Mucorales PCR assays for testing serum specimens

S Rocchi , E Scherer , C Mengoli , A Alanio , F Botterel et al.
Medical Mycology, 2021, 59 (2), pp.126-138. ⟨10.1093/mmy/myaa036⟩
Article dans une revue hal-03123965 v1

Highly conserved gsc1 gene of Pneumocystis jirovecii in patients with or without prior exposure to Echinocandins

Pierre Bonnet , Solène Le Gal , Claire Hoffmann , Florent Morio , Fouleymata Diabira et al.
Antimicrobial Agents and Chemotherapy, 2021, ⟨10.1128/AAC.01563-21⟩
Article dans une revue hal-03411559 v1
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Commercial Simplex and Multiplex PCR Assays for the Detection of Intestinal Parasites Giardia intestinalis, Entamoeba spp., and Cryptosporidium spp.: Comparative Evaluation of Seven Commercial PCR Kits with Routine In-House Simplex PCR Assays

Louise Basmaciyan , Alexandre François , Anne Vincent , Stéphane Valot , Alain Bonnin et al.
Microorganisms, 2021, 9 (11), pp.2325. ⟨10.3390/microorganisms9112325⟩
Article dans une revue hal-03751896 v1
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The CRISPR toolbox in medical mycology: State of the art and perspectives

Florent Morio , Lisa Lombardi , Geraldine Butler
PLoS Pathogens, 2020, 16 (1), pp.e1008201. ⟨10.1371/journal.ppat.1008201⟩
Article dans une revue hal-03842369 v2

A proposal for pragmatic investigation of possible clonal clusters of pneumocystis pneumonia cases

G. Nevez , Florent Morio , P. Bonnet , N. Le Nan , F.-X. Blanc et al.
Journal of Hospital Infection, 2020, 108, pp.215-216. ⟨10.1016/j.jhin.2020.11.022⟩
Article dans une revue hal-03790509 v1
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Hormographiella aspergillata: an emerging basidiomycete in the clinical setting? A case report and literature review

Maxime Moniot , Rose‐anne Lavergne , Thomas Morel , Romain Guieze , Florent Morio et al.
BMC Infectious Diseases, 2020, 20 (1), pp.945. ⟨10.1186/s12879-020-05679-z⟩
Article dans une revue hal-03945682 v2
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Update on the diagnosis of parasitic and fungal infections

Emilie Fréalle , Stéphane Valot , Renaud Piarroux , Jean Menotti , Laurence Lachaud et al.
Annales de Biologie Clinique, 2020, 78 (3), pp.299-313. ⟨10.1684/abc.2020.1554⟩
Article dans une revue hal-03610929 v1

Not All Clusters of Pneumocystis Pneumonia Cases are Related to Nosocomial Infections: A Proposal for a Pragmatic Approach to Investigate Possible Clonal Clusters

Gilles Nevez , Florent Morio , Pierre Bonnet , Nathan Le Nan , François-Xavier Blance et al.
Journal of Hospital Infection, 2020, ⟨10.1016/j.jhin.2020.11.022⟩
Article dans une revue hal-03062660 v1
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Dear medical mycologists, it is time to look outside the box

Florent Morio
FEMS Yeast Research, 2020, 20 (1), ⟨10.1093/femsyr/foz080⟩
Article dans une revue hal-03842042 v2

Draft Genome Sequence of the Yeast Kazachstania telluris CBS 16338 Isolated from Forest Soil in Ireland

Florent Morio , Caoimhe O’brien , Geraldine Butler
Mycopathologia, 2020, 185 (3), pp.587-590. ⟨10.1007/s11046-020-00449-6⟩
Article dans une revue hal-03842559 v1
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Signaling Pathways Governing the Caspofungin Paradoxical Effect in Aspergillus fumigatus

Nicolas Papon , Florent Morio , Dominique Sanglard
mBio, 2020, 11 (4), pp.1816-20. ⟨10.1128/mBio.01816-20⟩
Article dans une revue hal-02942844 v1
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Comparison of MultiLocus Sequence Typing (MLST) and Microsatellite Length Polymorphism (MLP) for Pneumocystis jirovecii genotyping

Maud Gits-Muselli , Pascal Campagne , Marie Desnos-Ollivier , Patrice Le Pape , Stéphane Bretagne et al.
Computational and Structural Biotechnology Journal, 2020, 18, pp.2890-2896. ⟨10.1016/j.csbj.2020.10.005⟩
Article dans une revue pasteur-03243552 v1
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Ibrutinib, a Bruton's tyrosine kinase inhibitor, a new risk factor for cryptococcosis

Julia Brochard , Florent Morio , Julien Mahe , Patrice Le Pape , T. Guimard et al.
Médecine et Maladies Infectieuses, 2020, 50, pp.742 - 745. ⟨10.1016/j.medmal.2020.07.005⟩
Article dans une revue hal-03492593 v1
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Species Distribution and Comparison between EUCAST and Gradient Concentration Strips Methods for Antifungal Susceptibility Testing of 112 Aspergillus Section Nigri Isolates

B. Carrara , R. Richards , S. Imbert , Florent Morio , Milène Sasso et al.
Antimicrobial Agents and Chemotherapy, 2020, 64 (7), ⟨10.1128/AAC.02510-19⟩
Article dans une revue (data paper) hal-04850428 v1
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Scedosporiosis/lomentosporiosis observational study (SOS): Clinical significance of Scedosporium species identification

Didier Bronnimann , Dea Garcia-Hermoso , Françoise Dromer , Fanny Lanternier , Laurence Maulin et al.
Medical Mycology, 2020, 59 (5), pp.486 - 497. ⟨10.1093/mmy/myaa086⟩
Article dans une revue pasteur-03222501 v1

Invasive aspergillosis due to Aspergillus section Usti: a multicenter retrospective study

Emmanouil Glampedakis , Sophie Cassaing , Arnaud Fekkar , Eric Dannaoui , Marie-Elisabeth Bougnoux et al.
Clinical Infectious Diseases, 2020, 72, pp.1379-1385. ⟨10.1093/cid/ciaa230⟩
Article dans une revue hal-02543503 v1
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Prevalence, geographic risk factor, and development of a standardized protocol for fungal isolation in cystic fibrosis: Results from the international prospective study “MFIP”

Laurence Delhaes , Kada Touati , Muriel Cornet , Rafael Cantón , Françoise Botterel et al.
Journal of Cystic Fibrosis, 2019, 18 (2), pp.212-220. ⟨10.1016/j.jcf.2018.10.001⟩
Article dans une revue hal-02316590 v1

Fungicide-driven alterations in azole-resistant Aspergillus fumigatus are related to vegetable crops in Colombia, South America

Carlos Alvarez-Moreno , Rose-Anne Lavergne , Ferry Hagen , Florent Morio , Jacques Meis et al.
Mycologia, 2019, 111 (2), pp.217-224. ⟨10.1080/00275514.2018.1557796⟩
Article dans une revue hal-04712281 v1

Rapid diagnostic tests relying on antigen detection from stool as an efficient point of care testing strategy for giardiasis and cryptosporidiosis? Evaluation of a new immunochromatographic duplex assay

Adeline Goudal , Adrien Laude , Stéphane Valot , Guillaume Desoubeaux , Nicolas Argy et al.
Diagnostic Microbiology and Infectious Disease, 2019, 93 (1), pp.33-36. ⟨10.1016/j.diagmicrobio.2018.07.012⟩
Article dans une revue hal-01987699 v1

One year prospective survey of azole resistance in Aspergillus fumigatus at a French cystic fibrosis reference centre: prevalence and mechanisms of resistance

Rose-Anne Lavergne , Florent Morio , I. Danner-Boucher , D. Horeau-Langlard , V. David et al.
Journal of Antimicrobial Chemotherapy, 2019, 74 (7), pp.1884-1889. ⟨10.1093/jac/dkz144⟩
Article dans une revue hal-04712354 v1
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Comparison between MALDI-TOF MS and MicroScan in the identification of emerging and multidrug resistant yeasts in a fourth-level hospital in Bogotá, Colombia

Andrés Ceballos-Garzón , Gloria Cortes , Florent Morio , Edna Zamora-Cruz , Melva Linares et al.
BMC Microbiology, 2019, 19 (1), pp.106. ⟨10.1186/s12866-019-1482-y⟩
Article dans une revue hal-04718726 v1

Precise genome editing using a CRISPR-Cas9 method highlights the role of CoERG11 amino acid substitutions in azole resistance in Candida orthopsilosis

Florent Morio , Lisa Lombardi , Ulrike Binder , Cédric Logé , Estelle Robert et al.
Journal of Antimicrobial Chemotherapy, 2019, 74 (8), pp.2230-2238. ⟨10.1093/jac/dkz204⟩
Article dans une revue hal-03827474 v1
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Genotyping Approach for Potential Common Source of Enterocytozoon bieneusi Infection in Hematology Unit

Guillaume Desoubeaux , Céline Nourrisson , Maxime Moniot , Marie-Alix de Kyvon , Virginie Bonnin et al.
Emerging Infectious Diseases, 2019, 25 (9), pp.1625-1631. ⟨10.3201/eid2509.190311⟩
Article dans une revue hal-02439508 v1

Assessment of the first commercial multiplex PCR kit (ParaGENIE Crypto-Micro Real-Time PCR) for the detection of Cryptosporidium spp., Enterocytozoon bieneusi, and Encephalitozoon intestinalis from fecal samples

Florent Morio , Philippe Poirier , Yohann Le Govic , Adrien Laude , Stephane Valot et al.
Diagnostic Microbiology and Infectious Disease, 2019, 95 (1), pp.34-37. ⟨10.1016/j.diagmicrobio.2019.04.004⟩
Article dans une revue hal-02483139 v1

Human cryptosporidiosis in immunodeficient patients in France (2015–2017)

Damien Costa , Romy Razakandrainibe , Marc Sautour , Stéphane Valot , Louise Basmaciyan et al.
Experimental Parasitology, 2018, 192, pp.108-112. ⟨10.1016/j.exppara.2018.08.001⟩
Article dans une revue hal-02902544 v1

Evaluation of a new multiplex PCR assay (ParaGENIE G-Amoeba Real-Time PCR kit) targeting Giardia intestinalis, Entamoeba histolytica and Entamoeba dispar/Entamoeba moshkovskii from stool specimens: evidence for the limited performances of microscopy-based approach for amoeba species identification

Florent Morio , S. Valot , A. Laude , Guillaume Desoubeaux , N. Argy et al.
Clinical Microbiology and Infection, 2018, 24 (11), pp.1205-1209. ⟨10.1016/j.cmi.2018.02.007⟩
Article dans une revue hal-01987706 v1

Azole Resistance in Aspergillus fumigatus in Patients with Cystic Fibrosis: A Matter of Concern?

A. Hamprecht , Florent Morio , O. Bader , Patrice Le Pape , J. Steinmann et al.
Mycopathologia, 2018, 183 (1), pp.151-160. ⟨10.1007/s11046-017-0162-4⟩
Article dans une revue hal-03997691 v1
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First report of sporadic cases of Candida auris in Colombia

Claudia Parra-Giraldo , Sandra Valderrama , Gloria Cortes-Fraile , Javier Garzón , Beatriz Ariza et al.
International Journal of Infectious Diseases, 2018, 69, pp.63-67. ⟨10.1016/j.ijid.2018.01.034⟩
Article dans une revue hal-03795018 v2

PCR-based detection of Aspergillus fumigatus and absence of azole resistance due to TR 34 /L98H in a french multicenter cohort of 137 patients with fungal rhinosinusitis

Florent Morio , Eric Dannaoui , Taieb Chouaki , Estelle Cateau , Olivier Malard et al.
Mycoses, 2018, 61 (1), pp.30 - 34. ⟨10.1111/myc.12702⟩
Article dans une revue hal-01698243 v1

Molecular basis of antifungal drug resistance in yeasts

Florent Morio , Rasmus Hare Jensen , Patrice Le Pape , Maiken Cavling Arendrup
International Journal of Antimicrobial Agents, 2017, 50 (5), pp.599-606. ⟨10.1016/j.ijantimicag.2017.05.012⟩
Article dans une revue hal-03842639 v1

A misleading false-negative result of Pneumocystis real-time PCR assay due to a rare punctual mutation: A French multicenter study.

Solène Le Gal , Florence Robert-Gangneux , Yann Pepino , Sorya Belaz , Céline Damiani et al.
Medical Mycology, 2017, 55 (2), pp.180-184. ⟨10.1093/mmy/myw051⟩
Article dans une revue hal-01477200 v1

Thermothelomyces thermophila human infections

C. Nourrisson , D. Garcia-Hermoso , Florent Morio , C. Kauffmann-Lacroix , N. Berrette et al.
Clinical Microbiology and Infection, 2017, 23 (5), pp.338 - 341. ⟨10.1016/j.cmi.2016.10.025⟩
Article dans une revue hal-01852116 v1

Home Environment as a Source of Life-Threatening Azole-Resistant Aspergillus fumigatus in Immunocompromised Patients

Rose-Anne Lavergne , Taieb Chouaki , Ferry Hagen , Benedicte Toublanc , Herve Dupont et al.
Clinical Infectious Diseases, 2017, 64 (1), pp.76-78. ⟨10.1093/cid/ciw664⟩
Article dans une revue hal-03577562 v1
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Diversity of Pneumocystis jirovecii Across Europe: A Multicentre Observational Study

Alexandre Alanio , Maud Gits-Muselli , Nicolas Guigue , Marie Desnos-Ollivier , Enrique Calderon et al.
EBioMedicine, 2017, 22, pp.155-163. ⟨10.1016/j.ebiom.2017.06.027⟩
Article dans une revue hal-01852128 v1

Epidemiology, risk factor, species distribution, antifungal resistance and outcome of Candidemia at a single French hospital: a 7-year study

Laurent Tadec , Jean-Philippe Talarmin , Thomas Gastinne , Cédric Bretonnière , Michel Miegeville et al.
Mycoses, 2016, 59 (5), pp.296-303. ⟨10.1111/myc.12470⟩
Article dans une revue hal-03813883 v1
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Answer to May 2016 Photo Quiz

Florent Morio , Sébastien Barbarot , Samuel Pineau , Hélène Aubert , Dea Garcia-Hermoso et al.
Journal of Clinical Microbiology, 2016, 54 (5), pp.1409-1409. ⟨10.1128/JCM.01250-14⟩
Article dans une revue pasteur-04882324 v1
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Colonization with the enteric protozoa Blastocystis is associated with increased diversity of human gut bacterial microbiota

Christophe Audebert , Gaël Even , Amandine Cian , Dima El Safadi , Gabriela Certad et al.
Scientific Reports, 2016, 6, pp.25255. ⟨10.1038/srep25255⟩
Article dans une revue hal-01363189 v1
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Prevalence, risk factors for infection and subtype distribution of the intestinal parasite Blastocystis sp. from a large-scale multi-center study in France

Dima El Safadi , Amandine Cian , Céline Nourrisson , Bruno Pereira , Christelle Morelle et al.
BMC Infectious Diseases, 2016, 16 (1), pp.451. ⟨10.1186/s12879-016-1776-8⟩
Article dans une revue hal-01368323 v1

Epidemiological Outbreaks of Pneumocystis jirovecii Pneumonia Are Not Limited to Kidney Transplant Recipients: Genotyping Confirms Common Source of Transmission in a Liver Transplantation Unit

Guillaume Desoubeaux , Manon Dominique , Florent Morio , Rose-Anne Thepault , Claire Franck-Martel et al.
Journal of Clinical Microbiology, 2016, ⟨10.1128/JCM.00133-16⟩
Article dans une revue hal-02443946 v1

Early diagnosis and monitoring of mucormycosis by detection of circulating DNA in serum: retrospective analysis of 44 cases collected through the French Surveillance Network of Invasive Fungal Infections (RESSIF)

L. Millon , R. Herbrecht , F. Grenouillet , Florent Morio , Alexandre Alanio et al.
Clinical Microbiology and Infection, 2016, 22 (9), pp.810.e1--810.e8. ⟨10.1016/j.cmi.2015.12.006⟩
Article dans une revue pasteur-01405208 v1

Identification of cryptic Candida species by MALDI-TOF mass spectrometry, not all MALDI-TOF systems are the same: focus on the C. parapsilosis species complex

Marion Haas , Frederic Grenouillet , Sophie Loubersac , Beatriz Ariza , Line Pepin-Puget et al.
Diagnostic Microbiology and Infectious Disease, 2016, 86 (4), pp.385 - 386
Article dans une revue hal-01397030 v1

Is real-time PCR-based diagnosis similar in performance to routine parasitological examination for the identification of Giardia intestinalis , Cryptosporidium parvum / Cryptosporidium hominis and Entamoeba histolytica from stool samples? Evaluation of a new commercial multiplex PCR assay and literature review

A. Laude , S. Valot , Guillaume Desoubeaux , N. Argy , C. Nourrisson et al.
Clinical Microbiology and Infection, 2016, 22 (2), pp.190.e1-190.e8. ⟨10.1016/j.cmi.2015.10.019⟩
Article dans une revue hal-01698271 v1
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First Description of Azole-Resistant Aspergillus fumigatus Due to TR 46 /Y121F/T289A Mutation in France

Rose-Anne Lavergne , Florent Morio , Loïc Favennec , Stéphane Dominique , Jacques Meis et al.
Antimicrobial Agents and Chemotherapy, 2015, 59 (7), pp.4331-4335. ⟨10.1128/AAC.00127-15⟩
Article dans une revue hal-02317942 v1

Longitudinal study assessing the return of chloroquine susceptibility of Plasmodium falciparum in isolates from travellers returning from West and Central Africa, 2000–2011

Dima El Safadi , Amandine Cian , Céline Nourrisson , Bruno Pereira , Christelle Morelle et al.
Malaria Journal, 2013, 12 (1), pp.35. ⟨10.1186/1475-2875-12-35⟩
Article dans une revue hal-03528300 v1

Deciphering azole resistance mechanisms with a focus on transcription factor-encoding genes TAC1, MRR1 and UPC2 in a set of fluconazole-resistant clinical isolates of Candida albicans

Florent Morio , Fabrice Pagniez , Myriam Besse , Françoise Gay-Andrieu , Michel Miegeville et al.
International Journal of Antimicrobial Agents, 2013, 42 (5), pp.410-415. ⟨10.1016/j.ijantimicag.2013.07.013⟩
Article dans une revue istex hal-03827331 v1

Successful treatment with fumagillin of the first pediatric case of digestive microsporidiosis in a liver-kidney transplant

Guillaume Desoubeaux , Z Maakaroun-Vermesse , C Lier , E Bailly , Florent Morio et al.
Transplant Infectious Disease, 2013, ⟨10.1111/tid.12158⟩
Article dans une revue istex hal-02443895 v1

Phaeohyphomycosis due to Exophiala xenobiotica as a cause of fungal arthritis in an HIV-infected patient

Florent Morio , Jean-Yves Le Berre , Dea Garcia-Hermoso , Mohammad Javad Najafzadeh , Sybren G. de Hoog et al.
Medical Mycology, 2012, 50 (5), pp.513-517. ⟨10.3109/13693786.2011.648218⟩
Article dans une revue pasteur-02262346 v1

Amino acid substitutions in the Candida albicans sterol 5,6-desaturase (Erg3p) confer azole resistance: characterization of two novel mutants with impaired virulence

Florent Morio , Fabrice Pagniez , C. Lacroix , Michel Miegeville , Patrice Le Pape
Journal of Antimicrobial Chemotherapy, 2012, 67 (9), pp.2131-2138. ⟨10.1093/jac/dks186⟩
Article dans une revue hal-03822982 v1

High prevalence of triazole resistance in Aspergillus fumigatus, especially mediated by TR/L98H, in a French cohort of patients with cystic fibrosis

Florent Morio , Guillaume Ghislain Aubin , Isabelle Danner-Boucher , Alain Haloun , Emilie Sacchetto et al.
Journal of Antimicrobial Chemotherapy, 2012, 67 (8), pp.1870-1873. ⟨10.1093/jac/dks160⟩
Article dans une revue pasteur-02262445 v1

Fatal Invasive Infection with Fungemia Due to Microascus cirrosus after Heart and Lung Transplantation in a Patient with Cystic Fibrosis

Charline Miossec , Florent Morio , Thierry Lepoivre , Patrice Le Pape , Dea Garcia-Hermoso et al.
Journal of Clinical Microbiology, 2011, 49 (7), pp.2743-2747. ⟨10.1128/JCM.00127-11⟩
Article dans une revue pasteur-02262481 v1

Design, Synthesis, and in vitro Antifungal Activity of 1-[(4-Substituted-benzyl)methylamino]-2-(2,4-difluorophenyl)-3-(1H-1,2,4-triazol-1-yl)propan-2-ols

Rémi Guillon , Fabrice Pagniez , Francis Giraud , Damien Crépin , Carine Picot et al.
ChemMedChem, 2011, 6 (5), pp.816 - 825. ⟨10.1002/cmdc.201000530⟩
Article dans une revue istex hal-01689176 v1

Disseminated Scedosporium/Pseudallescheria Infection after Double-Lung Transplantation in Patients with Cystic Fibrosis

Florent Morio , Delphine Horeau-Langlard , Françoise Gay-Andrieu , Jean-Philippe Talarmin , Alain Haloun et al.
Journal of Clinical Microbiology, 2010, 48 (5), pp.1978 - 1982. ⟨10.1128/JCM.01840-09⟩
Article dans une revue hal-03134637 v1

Screening for amino acid substitutions in the Candida albicans Erg11 protein of azole-susceptible and azole-resistant clinical isolates: new substitutions and a review of the literature

Florent Morio , Cédric Logé , Bernard Besse , Christophe Hennequin , Patrice Le Pape
Diagnostic Microbiology and Infectious Disease, 2010, 66 (4), pp.373-384. ⟨10.1016/j.diagmicrobio.2009.11.006⟩
Article dans une revue istex hal-03830187 v1