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François ALLAL

François Allal - Ifremer - MARBEC
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Current affiliations
Researcher identifiers
  • IdHAL francois-allal
  • ResearcherId : Q-8075-2018
  • ORCID 0000-0002-8232-904X
  • Google Scholar : https://scholar.google.fr/citations?user=G_KltjcAAAAJ&hl=fr
  • IdRef : 14083320X
  • ResearcherId : http://www.researcherid.com/rid/Q-8075-2018

Presentation

Chargé de recherche à l’Ifremer en génétique et génomique aquacole depuis 2013, jeparticipe à l’ambition de participer de relever le défi de l’amélioration de la durabilité de la pisciculture grâce notamment à la sélection génomique. Une grande part de mes travaux de recherche concerne l’intégration des outils de la génomique moléculaire et de la génomique quantitative pour l’amélioration des caractères de durabilité tels que la résistance aux maladies, l’efficacité alimentaire, les rendements productifs, ou les interactions génotype x environnement, mais aussi le déterminisme du sexe, ou les traits de personnalité chez le bar européen (*Dicentrarchus labrax*).

Publications

Genetic selection and novel feeds containing single cell protein as a substitute for fishmeal in European sea bass: Effects on growth, fatty acid profile and E-sensing analysis of fillets

F. Moroni , M. Carvalho , A. R. Di Rosa , S. Torrecillas , R. Fontanillas
Aquaculture Reports, 2024, 35, pp.102021. ⟨10.1016/j.aqrep.2024.102021⟩
Journal articles hal-04531681v1
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Genetically superior European sea bass (Dicentrarchus labrax) and nutritional innovations: Effects of functional feeds on fish immune response, disease resistance, and gut microbiota

Simona Rimoldi , Daniel Montero , Silvia Torrecillas , Antonio Serradell , Felix Acosta
Aquaculture Reports, 2023, 33, pp.101747. ⟨10.1016/j.aqrep.2023.101747⟩
Journal articles hal-04224778v1
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Changes in transcriptomic and behavioural traits in activity and ventilation rates associated with divergent individual feed efficiency in gilthead sea bream (Sparus aurata)

Josep Calduch-Giner , Enrique Rosell-Moll , Mathieu Besson , Alain Vergnet , Jean-Sébastien Bruant
Aquaculture Reports, 2023, 29, pp.101476. ⟨10.1016/j.aqrep.2023.101476⟩
Journal articles hal-03948385v1
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In a marine teleost, the significance of oxygen supply for acute thermal tolerance depends upon the context and the endpoint used

Julie Nati , Felipe Blasco , Charles Rodde , Alain Vergnet , François Allal
Journal of Experimental Biology, 2023, 226 (11), pp.jeb245210. ⟨10.1242/jeb.245210⟩
Journal articles hal-04100080v1
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Whole‐genome sequencing identifies interferon-induced protein IFI6/IFI27-like as a strong candidate gene for VNN resistance in European sea bass

Emilie Delpuech , Marc Vandeputte , Romain Morvezen , Anastasia Bestin , Mathieu Besson
Genetics Selection Evolution, 2023, 55, pp.30. ⟨10.1186/s12711-023-00805-2⟩
Journal articles hal-04116035v1
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Nutritional innovations in superior European sea bass (Dicentrarchus labrax) genotypes: Implications on fish performance and feed utilization

D. Montero , M. Carvalho , G. Terova , R. Fontanillas , A. Serradell
Aquaculture, 2023, 572, pp.739486. ⟨10.1016/j.aquaculture.2023.739486⟩
Journal articles hal-04094069v1
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Genotype x nutrition interactions in European sea bass (Dicentrarchus labrax): Effects on gut health and intestinal microbiota

S. Torrecillas , S. Rimoldi , D. Montero , A. Serradell , F. Acosta
Aquaculture, 2023, 574, pp.739639. ⟨10.1016/j.aquaculture.2023.739639⟩
Journal articles hal-04094082v1

Potential of genomic selection for growth, meat content and colour traits in mixed-family breeding designs for the Pacific oyster Crassostrea gigas

Antoine Jourdan , Romain Morvezen , Florian Enez , Pierrick Haffray , Adeline Lange
Aquaculture, 2023, 576, pp.739878. ⟨10.1016/j.aquaculture.2023.739878⟩
Journal articles hal-04158060v1
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Functional Additives in a Selected European Sea Bass (Dicentrarchus labrax) Genotype: Effects on the Stress Response and Gill Antioxidant Response to Hydrogen Peroxide (H2O2) Treatment

Antonio Serradell , Daniel Montero , Genciana Terova , Simona Rimoldi , Alex Makol
Animals, 2023, 13 (14), 2265 (20p.). ⟨10.3390/ani13142265⟩
Journal articles hal-04204113v1

Natural cortisol production is not linked to the sexual fate of European sea bass

Alexander Goikoetxea , Arianna Servili , Camille Houdelet , Olivier Mouchel , Sophie Hermet
Fish Physiology and Biochemistry, 2022, 48 (4), pp.1117-1135. ⟨10.1007/s10695-022-01104-1⟩
Journal articles hal-03773801v1

Potential for genomic selection on feed efficiency in gilthead sea bream (Sparus aurata), based on individual feed conversion ratio, carcass and lipid traits

Mathieu Besson , Nicky Rombout , Germain Salou , Alain Vergnet , Sophie Cariou
Aquaculture Reports, 2022, 24, ⟨10.1016/j.aqrep.2022.101132⟩
Journal articles hal-03679214v1
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Optimization of Genomic Selection to Improve Disease Resistance in Two Marine Fishes, the European Sea Bass (Dicentrarchus labrax) and the Gilthead Sea Bream (Sparus aurata)

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen
Frontiers in Genetics, 2021, 12, pp.665920. ⟨10.3389/fgene.2021.665920⟩
Journal articles hal-03360561v1
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Development and testing of a combined species SNP array for the European seabass (Dicentrarchus labrax) and gilthead seabream (Sparus aurata)

C. Peñaloza , T. Manousaki , R. Franch , A. Tsakogiannis , A. K. Sonesson
Genomics, 2021, 113 (4), pp.2096--2107. ⟨10.1016/j.ygeno.2021.04.038⟩
Journal articles hal-03415631v1
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Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of the Sea (ICES) member countries

Pierre Boudry , François Allal , Muhammad L. Aslam , Luca Bargelloni , Tim P. Bean
Aquaculture Reports, 2021, 20, pp.100700. ⟨10.1016/j.aqrep.2021.100700⟩
Journal articles hal-03411084v1
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Case report of osteomyelitis of the mandible in osteopetrosis and management considerations

Sarah Allal , Valentin Rabuel , Charline Gengler , Catherine Douchet , Francois Allal
International Journal of Surgery Case Reports, 2021, 81, pp.105813. ⟨10.1016/j.ijscr.2021.105813⟩
Journal articles hal-03404273v1
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Sex dimorphism in European sea bass (Dicentrarchus labrax L.): New insights into sex-related growth patterns during very early life stages

Sara Faggion , Marc Vandeputte , Alain Vergnet , Frédéric Clota , Marie-Odile Blanc
PLoS ONE, 2021, 16 (4), pp.e0239791. ⟨10.1371/journal.pone.0239791⟩
Journal articles hal-03206637v1
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An investigation of links between metabolic rate and feed efficiency in European sea bass Dicentrarchus labrax

Charles Rodde , Hugues de Verdal , Marc Vandeputte , François Allal , Julie Nati
Journal of Animal Science, 2021, 99 (6), pp.1-9. ⟨10.1093/jas/skab152⟩
Journal articles hal-03360566v1

Unraveling the genotype by environment interaction in a thermosensitive fish with a polygenic sex determination system

Benjamin Geffroy , Mathieu Besson , Núria Sánchez-Baizán , Frederic Clota , Alexander Goikoetxea
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (50), pp.e2112660118. ⟨10.1073/pnas.2112660118⟩
Journal articles hal-03485506v1
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Parental selection for growth and early-life low stocking density increase the female-to-male ratio in European sea bass

Benjamin Geffroy , Manuel Gesto , Frédéric Clota , Johan Aerts , Maria J. Darias
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-93116-9⟩
Journal articles hal-03360565v1
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Genome-wide association studies for resistance to viral nervous necrosis in three populations of European sea bass (Dicentrarchus labrax) using a novel 57k SNP array DlabChip

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen
Aquaculture, 2021, 530, pp.735930. ⟨10.1016/j.aquaculture.2020.735930⟩
Journal articles hal-03544239v1
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Different survival of three populations of European sea bass (Dicentrarchus labrax) following challenge with two variants of nervous necrosis virus (NNV)

Sofie Barsøe , François Allal , Alain Vergnet , Marc Vandeputte , Niels Jørgen Olesen
Aquaculture Reports, 2021, 19, pp.100621. ⟨10.1016/j.aqrep.2021.100621⟩
Journal articles hal-03150815v1
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Contribution of a bioenergetics model to investigate the growth and survival of European seabass in the Bay of Biscay - English Channel area

Chloe Dambrine , Martin Huret , Mathieu Woillez , Laure Pecquerie , Francois Allal
Ecological Modelling, 2020, 423, pp.109007. ⟨10.1016/j.ecolmodel.2020.109007⟩
Journal articles hal-02921206v1
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The contribution of ancient admixture to reproductive isolation between European sea bass lineages

Maud Duranton , François Allal , Sophie Valière , Olivier Bouchez , François Bonhomme
Evolution Letters, 2020, 4 (3), pp.226-242. ⟨10.1002/evl3.169⟩
Journal articles hal-03065745v1
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How to genetically increase fillet yield in fish: Relevant genetic parameters and methods to predict genetic gain

Marc Vandeputte , Clémence Fraslin , Pierrick Haffray , Anastasia Bestin , François Allal
Aquaculture, 2020, 519, pp.734877. ⟨10.1016/j.aquaculture.2019.734877⟩
Journal articles hal-03150887v1
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Population, Temperature and Feeding Rate Effects on Individual Feed Efficiency in European Sea Bass (Dicentrarchus labrax)

Charles Rodde , Marc Vandeputte , François Allal , Mathieu Besson , Frédéric Clota
Frontiers in Marine Science, 2020, 7, ⟨10.3389/fmars.2020.578976⟩
Journal articles hal-03150873v1
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Evaluation of a European sea bass (Dicentrarchus labrax L.) post-larval tagging method with ultra-small RFID tags

Sara Faggion , Pierre Sanchez , Marc Vandeputte , Frédéric Clota , Alain Vergnet
Aquaculture, 2020, 520, pp.734945. ⟨10.1016/j.aquaculture.2020.734945⟩
Journal articles hal-03150884v1
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Variations in isotope incorporation rates and trophic discrimination factors of carbon and nitrogen stable isotopes in scales from three European sea bass (Dicentrarchus labrax) populations

Charles Rodde , Hugues de Verdal , Sébastien Lefebvre , Christophe Menniti , Marc Vandeputte
Journal of Experimental Marine Biology and Ecology, 2020, 533, pp.151468. ⟨10.1016/j.jembe.2020.151468⟩
Journal articles hal-03097301v1
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First evidence of realized selection response on fillet yield in Rainbow trout Oncorhynchus mykiss, Using Sib selection or based on correlated ultrasound measurements

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Jean-Michel Allamellou
Frontiers in Genetics, 2019, 10, pp.1-13. ⟨10.3389/fgene.2019.01225⟩
Journal articles hal-02627462v1

The European sea bass: a key marine fish model in the wild and in aquaculture

Marc Vandeputte , P.-A. Gagnaire , F. Allal
Animal Genetics, 2019, 50 (3), pp.195-206. ⟨10.1111/age.12779⟩
Journal articles hal-02395941v1

Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.

Sara Faggion , Marc Vandeputte , Béatrice Chatain , Pierre-Alexandre Gagnaire , François Allal
Heredity, 2019, 122 (5), pp.612-621. ⟨10.1038/s41437-018-0157-z⟩
Journal articles hal-02395931v1

APIS: An auto-adaptive parentage inference software that tolerates missing parents

Ronan Griot , Francois Allal , Sophie Brard-Fudulea , Romain Morvezen , Pierrick Haffray
Molecular Ecology Resources, 2019, pp.1-12. ⟨10.1111/1755-0998.13103⟩
Journal articles hal-02434174v1
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Combining Individual Phenotypes of Feed Intake With Genomic Data to Improve Feed Efficiency in Sea Bass

Mathieu Besson , François Allal , Béatrice Chatain , Alain Vergnet , Frédéric Clota
Frontiers in Genetics, 2019, 10, pp.1-14. ⟨10.3389/fgene.2019.00219⟩
Journal articles hal-02403255v1

Dynamic epimarks in sex-related genes predict gonad phenotype in the European sea bass, a fish with mixed genetic and environmental sex determination

Dafni Anastasiadi , Marc Vandeputte , Nuria Sanchez-Baizan , Francois Allal , Francesc Piferrer
Epigenetics, 2018, 13 (9), pp.988-1011. ⟨10.1080/15592294.2018.1529504⟩
Journal articles hal-01994184v1
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The origin and remolding of genomic islands of differentiation in the European sea bass

Maud Duranton , François Allal , Christelle Fraïsse , Nicolas Bierne , François Bonhomme
Nature Communications, 2018, 9 (1), ⟨10.1038/s41467-018-04963-6⟩
Journal articles hal-01825457v1
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Genome-wide association and genomic prediction of resistance to viral nervous necrosis in European sea bass (Dicentrarchus labrax) using RAD sequencing

Christos Palaiokostas , Sophie Cariou , Anastasia Bestin , Jean-Sebastien Bruant , Pierrick Haffray
Genetics Selection Evolution, 2018, 50 (1), pp.1-11. ⟨10.1186/s12711-018-0401-2⟩
Journal articles hal-01826622v1

Investigation of morphological predictors of fillet and carcass yield in European sea bass (Dicentrarchus labrax) for application in selective breeding

Marc Vandeputte , Antonio Puledda , Anne Sophie Tyran , Anastasia Bestin , Céline Coulombet
Aquaculture, 2017, 470, pp.40-49. ⟨10.1016/j.aquaculture.2016.12.014⟩
Journal articles hal-01595276v1

Estimates of genetic variability and inbreeding in experimentally selected populations of European sea bass

J.E.J. Hillen , I. Coscia , Marc Vandeputte , K. Herten , B. Hellemans
Aquaculture, 2017, 479, pp.742-749. ⟨10.1016/j.aquaculture.2017.07.012⟩
Journal articles hal-01583182v1
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Viral encephalopathy and retinopathy in aquaculture: a review

Q.K. Doan , Marc Vandeputte , B. Chatain , Thierry Morin , F. Allal
Journal of Fish Diseases, 2017, 40 (5), pp.717-742. ⟨10.1111/jfd.12541⟩
Journal articles hal-01533903v1

Improving feed efficiency in fish using selective breeding: a review

Hugues de Verdal , Hans Komen , Edwige Quillet , Béatrice Chatain , François Allal
Reviews in Aquaculture, 2017, 10 (4), pp.1-19. ⟨10.1111/raq.12202⟩
Journal articles hal-01602277v1

How could fully scaled carps appear in natural waters in Madagascar?

Jean-Noël Hubert , François Allal , Caroline Hervet , Monique Ravakarivelo , Zsigmond Jeney
Proceedings of the Royal Society B: Biological Sciences, 2016, 283 (1837), pp.1-8. ⟨10.1098/rspb.2016.0945⟩
Journal articles hal-01924181v1
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Heritability of boldness and hypoxia avoidance in European seabass, Dicentrarchus labrax

Sebastien Ferrari , Khaled Horri , François Allal , Alain Vergnet , David Benhaim
PLoS ONE, 2016, 11 (12), pp.1-16. ⟨10.1371/journal.pone.0168506⟩
Journal articles hal-01602254v1

Past climate changes explain the phylogeography of Vitellaria paradoxa over Africa

François Allal , H. Sanou , L. Millet , A. Vaillant , L. Camus-Kulandaivelu
Heredity, 2011, 107 (2), pp.174-186. ⟨10.1038/hdy.2011.112⟩
Journal articles hal-02642275v1

Phenomic selection, an alternative to genomic selection in animal breeding?

Faten Jaouahdou , Florian Enez , Christophe Eklouh-Molinier , Jérôme Doerflinger , Guylaine Collewet
Workshop spectroscopie et microscopie du milieu marin, Feb 2023, Brest, France
Conference papers hal-04185933v1

Genotype by environment interaction explain sex determination in the European Seabass

Benjamin Geffroy , Mathieu Besson , Núria Sánchez-Baizán , Frédéric Clota , Alexander Goikoetxea
12th International Symposium on Reproductive Physiology of Fish, May 2023, Hersonisos - Crète, Greece
Conference papers hal-04185947v1
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AN R-BASED PIPELINE FOR GENOTYPE CALLING AND PARENTAGE ASSIGNMENT OF TRIPLOID OFFSPRING TO THEIR DIPLOID PARENTS

Mathieu Besson , Julien Roche , Pierre Patrice , Pierrick Haffray , François Allal
Aquaculture Europe 2023, Sep 2023, Vienne, Austria
Conference papers hal-04385840v1

Larval growth and differential survival in three natural populations of European seabass (Dicentrarchus labrax) exposed to four thermal regimes

Damien Crestel , Alain Vergnet , Frédéric Clota , Marie-Odile Blanc , Stéphane Lallement
Aquaculture Europe 2023, Sep 2023, Wien, Austria
Conference papers hal-04185974v1

Fine mapping for Viral Nervous Necrosis resistance in European sea bass (Dicentrarchus labrax) identified by whole genome sequencing

Emilie Delpuech , Marc Vandeputte , Florence Phocas , Anastasia Bestin , Mathieu Besson
Aquaculture Europe 2022, Sep 2022, Rimini, Italy
Conference papers hal-04185721v1

Germ stem cell grafting in european sea bass: a practical approach

Alain Vergnet , Marc Vandeputte , Jean-Jacques Lareyre , François Allal
Aquaculture Europe 2022, Sep 2022, Rimini, Italy
Conference papers hal-03911893v1
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Can we combine genetics and a two-step temperature control to move towards monosex European seabass Dicentrarchus labrax?

Marc Vandeputte , Frédéric Clota , Alain Vergnet , Marie-Odile Blanc , Stéphane Lallement
Aquaculture Europe 2022, Sep 2022, Rimini, Italy
Conference papers hal-04185712v1

Can genomics improve the selection efficiency of sea bream (Sparus aurata) candidates reared in sanitary protected RAS when GxE exist with the production environment in open-sea cages?

Anastasia Bestin , Jonathan D’ambrosio , Mathieu Besson , F Massieu , Alain Vergnet
XIV. International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile
Conference papers hal-04185868v1

Phenomic selection, an alternative to genomic selection in animal breeding?

Faten Jaouahdou , Florian Enez , Christophe Eklouh-Molinier , Jérôme Doerflinger , Guylaine Collewet
International Symposium on Genetics in Aquaculture XIV, Nov 2022, Puerto Varas, Chile
Conference papers hal-04185835v1

Combined genomic approaches to unravel sex determination in the European seabass

François Allal , Mathieu Besson , Núria Sánchez-Baizán , Frédéric Clota , Alexander Goikoetxea
6. Symposium on Genomics in Aquaculture, May 2022, Grenade, Spain
Conference papers hal-04185371v1

IFI6, an interferon alpha induced protein, identified by whole genome sequencing as involved in Viral Nervous Necrosis resistance in European sea bass (Dicentrarchus labrax)

Emilie Delpuech , Marc Vandeputte , Romain Morvezen , Anastasia Bestin , Mathieu Besson
International Symposium on Genetics in Aquaculture XIV, Nov 2022, Puerto Varas, Chile
Conference papers hal-04185918v1

Development of epigenetic biomarkers for the European seabass (Dicentrarchus labrax)

Núria Sánchez-Baizán , J Denkena , François Allal , Maria Colome-Tatche , Marc Vandeputte
6th Symposium on Genomics in Aquaculture, May 2022, Grenade, Spain
Conference papers hal-04185380v1

Improving feed efficiency in fish: let’s get down to business

François Allal , Mathieu Besson , Alain Vergnet , David J Mckenzie , Frédéric Clota
Aquaculture Europe 2022, Sep 2022, Rimini, Italy
Conference papers hal-04185734v1

Les hautes températures en phase juvénile favorisent la croissance et la différenciation femelle du bar (Dicentrarchus labrax L.)

Frédéric Clota , Benjamin Geffroy , Alain Vergnet , Marie-Odile Blanc , François Ruelle
7émes Journées Recherche Filière Piscicole, Jul 2022, Paris, France
Conference papers hal-04185410v1
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WHOLE GENOME SEQUENCING TO REFINE THE DETECTION OF QTL FOR VIRAL NERVOUS NECROSIS IN EUROPEAN SEA BASS (DICENTRARCHUS LABRAX)

Emilie Delpuech , Marc Vandeputte , Florence Phocas , Anastasia Bestin , Mathieu Besson
6th symposium on Genomics in Aquaculture Symposium, May 2022, Grenade, Spain
Conference papers hal-04116026v1

Cartographie fine de la résistance à la nécrose nerveuse virale chez le bar identifiée par séquençage du génome entier

Emilie Delpuech , Marc Vandeputte , Florence Phocas , Yoannah François , Anastasia Bestin
7èmes Journées Recherche Filière Piscicole, Jul 2022, Paris, France
Conference papers hal-04185459v1

Réduction du coût de la sélection génomique par utilisation de panels à plus faible densité de marqueurs chez le bar et la daurade

Jonathan D’ambrosio , Mathieu Besson , Anastasia Bestin , Jean-Sébastien Bruant , Aline Bajek
7. Journées de la Recherche Piscicole, Jul 2022, Paris, France
Conference papers anses-03889117v1

Using genome-wide ancestry pattern in European sea bass to assess phenotypic variation and ensure sustainable aquaculture

Maeva Leitwein , Ghislain Durif , Pierre-Alexandre Gagnaire , Alain Vergnet , Frédéric Clota
6th Symposium on Genomics in Aquaculture, May 2022, Grenade, Spain
Conference papers hal-04185352v1
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Phénomix : Estimation de l'héritabilité de spectres Raman et premiers résultats d'évaluation phénomique chez la truite

Florence Phocas , Pierrick Haffray , Florian Enez , Francois Allal , Pierre Boudry
Journées Techniques Interfilières du SYSAAF, Oct 2022, Rennes, France
Conference papers hal-04386542v1

Genetic correlations between processing traits and individual feed efficiency in a gilthead sea bream (Sparus aurata) commercial line

Anastasia Bestin , Mathieu Besson , Alain Vergnet , François Allal , Frédéric Clota
Aquaculture Europe 2021, Oct 2021, Funchal, Portugal
Conference papers hal-03360548v1

Sex dimorphism in European sea bass (Dicentrarchus labrax L.) : new insights into sex-related growth patterns during very early life stages

Sara Faggion , Marc Vandeputte , Alain Vergnet , Frédéric Clota , Marie‐odile Blanc
Aquaculture Europe 2020 online, Apr 2021, Cork, Ireland
Conference papers hal-03187478v1

Phenotypic and genomic correlations between feed efficiency and metabolic traits in European sea bass

Mathieu Besson , David J Mckenzie , Julie J.H Nati , Salou Germain , Alain Vergnet
Aquaculture Europe 2021, Oct 2021, Funchal, Portugal
Conference papers hal-03360559v1

Genomically assisted reconstruction of the ancestral Dicentrarchus labrax L. Mediterranean lineage

Sara Faggion , Duranton Maud , Pierre-Alexandre Gagnaire , Marc Vandeputte , François Allal
Aquaculture Europe 2021, Oct 2021, Funchal, Portugal
Conference papers hal-03360557v1

Genome wide association studies revealed one strong effect QTLfor viral nervous necrosis resistance in European sea bass (Dicentrarchus labrax)

Ronan Griot , François Allal , Florence Phocas , Sophie Brard-Fudulea , Romain Morvezen
Aquaculture Europe 2020, Apr 2021, Cork, Ireland
Conference papers hal-03198222v1

Genomic prediction and genotype-by-temperature interaction of sex tendency in European sea bass.

François Allal , Mathieu Besson , Bastien Sadoul , François Ruelle , Pegart Mako
Aquaculture Europe 2021, Oct 2021, Funchal, Portugal
Conference papers hal-03360554v1

Late high temperature promotes fast growth and female differentiation in European sea bass Dicentrarchus labrax, while early photoperiod has no effect on either trait

Frédéric Clota , Benjamin Geffroy , Alain Vergnet , Marie-Odile Blanc , Stéphane Lallement
Aquaculture Europe 2021, Oct 2021, Funchal, Portugal
Conference papers hal-03360551v1

Multigenerational epigenetic inheritance of masculinizing temperatures in the European sea bass

Nuria Sanchez-Baizan , Marc Vandeputte , François Allal , Francesc Piferrer
6th International Symposium Genomics in Aquaculture, Sep 2020, Granada, Spain
Conference papers hal-03187504v1

Genomically assisted reconstruction of the ancestral Dicentrarchus labrax Mediterranean lineage

Sara Faggion , Maud Duranton , Pierre-Alexandre Gagnaire , Marc Vandeputte , François Allal
6th International Symposium Genomics in Aquaculture, Sep 2020, Granada, Spain
Conference papers hal-03187502v1

Successful realized selection response for fillet yield in rainbow trout Oncorhynchus mykiss

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Sébastien Courant
World Aquaculture 2018, European Aquaculture Society (EAS)., Aug 2019, Montpellier, France
Conference papers hal-02264916v1

Améliorer l'efficacité alimentaire des poissons en utilisant une nouvelle méthode de phénotypage en aquarium individuel

Mathieu Besson , François Allal , Alain Vergnet , Frédéric Clota , Sophie Cariou
6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France
Conference papers hal-02264927v1

Accounting for genetic variability in fitness-related traits using a Dynamic Energy Budget model, an example on European Seabass

Mathieu Besson , Marc Vandeputte , François Allal , Patrick Prunet , Marie-Laure Bégout
6. International Symposium and Thematic School on ‘Dynamic energy Budget theory for metabolic organization’ (DEB2019), Apr 2019, Brest, France. pp.47
Conference papers hal-03187437v1

How to genetically increase fillet yield in fish: relevant genetic parameters and methods for the estimation of genetic gain

Marc Vandeputte , Clémence Fraslin , Pierrick Haffray , Anastasia Bestin , François Allal
Aquaculture Europe 2019, Oct 2019, Berlin, Germany
Conference papers hal-03187446v1

Epigenetic inheritance and integration of masculinizing temperatures of the European sea bass (Dicentrarchus labrax)

Nuria Sanchez-Baizan , Dafni Anastasiadi , Marc Vandeputte , François Allal , Francesc Piferrer
Epigenetic inheritance Symposium, Aug 2019, Zurich, Switzerland
Conference papers hal-03187444v1

Réponse à la sélection sur le rendement de filet chez la truite arc-en-ciel

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Jean-Michel Allamelou
6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France
Conference papers hal-02734410v1

Intégration de caractères de résistance à cinq pathologies dans les schémas de sélection commerciale de truite, bar et daurade

Anastasia Bestin , Yoannah François , Thierry Morin , Mathilde Dupont-Nivet , Marc Vandeputte
6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France
Conference papers hal-02264929v1

Interaction génotype x aliment: que sait-on, où va-t-on ?

Marc Vandeputte , Pierrick Haffray , Anastasia Bestin , François Allal , Mathilde Dupont-Nivet
Journée du SFAM, Mar 2019, Montpellier, France
Conference papers hal-03187439v1

Breeding for disease resistance in farmed fish in the era of high-throughput sequencing

Christos Palaiokostas , Martin Kocour , Tomáš Veselý , Sophie Cariou , Anastasia Bestin
11th World Congress on Genetics Applied to Livestock Production, Feb 2018, Auckland, New Zealand
Conference papers hal-03156780v1

Genome-wide association study and genomic evaluations for resistance to Viral Nervous Necrosis in wild populations of European seabass Dicentrarchus labrax

François Allal , Quoc Khanh Doan , Béatrice Chatain , Alain Vergnet , Pierrick Haffray
AQUA 2018, Aug 2018, Montpellier, France
Conference papers hal-03187164v1

Des puces pour prédire l’avenir…

François Allal , Ronan Griot , Pierre-Alexandre Gagnaire , Romain Morvezen , Sophie Brard
Journées du SFAM (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2018, Montpelllier, France
Conference papers hal-03156824v1

Genetic parameters of resistance to gastroenteritis (rtge) and rainbow trout fry syndrome (rtfs) in rainbow trout oncorhynchus mykiss and their genetic correlations with production traits

Pierrick Haffray , Anastasia Bestin , Florian Enez , Sébastien Courant , Daniel Guemene
World Aquaculture 2018, Aug 2018, Montpellier, France
Conference papers hal-02738108v1

APIS: A new auto-adaptive parentage inference software tolerant to missing parents

Ronan Griot , François Allal , Sophie Brard-Fudulea , Sophie S. Cariou , Pierrick Haffray
13th International Symposium Genetics in Aquaculture, Jul 2018, Cairns, Australia
Conference papers hal-03187121v1

Genetic improvement of feed conversion ratio in sea bass : new approach based on individual phenotypes and genomic info

Mathieu Besson , François Allal , Béatrice Chatain , Alain Vergnet , Frédéric Clota
Genetics and Breeding in Aquaculture: North meets South, May 2018, Bergen, Norway
Conference papers hal-03156894v1
Image document

A first demonstration of realized selection response for fillet yield in fish, in rainbow trout oncorhynchus mykiss

Marc Vandeputte , Jérôme Bugeon , Anastasia Bestin , Alexandre Desgranges , Sebastien Courant
13. International Symposium for Genetics in Aquaculture (ISGA XIII), Jul 2018, Cairns, Australia
Conference papers hal-02264933v1

Heritabilities of resistance to VNN and vibriosis and genetic correlations with production traits and processing yields in two selected commercial lines of the European sea bass Dicentrarchus labrax

Romain Morvezen , Anastasia Bestin , Anne-Sophie Tiriau , Laurane Pallandre , Joelle Cabon
13th International Symposium Genetics in Aquaculture, Jul 2018, Cairns, Australia
Conference papers hal-03187102v1

Sélection du bar pour l’efficacité alimentaire: on y arrive

Mathieu Besson , Francois Allal , Béatrice Chatain , Alain Vergnet , Frédéric Clota
Journée du SFAM, Mar 2018, Montpellier, France
Conference papers hal-03156814v1

Estimation of genetic parameters of feed conversion ratio based on individual phenotypes in sea bass

Mathieu Besson , François Allal , Béatrice Chatain , Alain Vergnet , Frédéric Clota
11th World Congress on Genetics Applied to Livestock Production, Feb 2018, Auckland, New Zealand
Conference papers hal-03156802v1

Selective breeding on tolerance to fasting improves feed conversion ratio of sea bass

Mathieu Besson , François Allal , Béatrice Chatain , Alain Vergnet , Frédéric Clota
AQUA 2018, Aug 2018, Montpellier, France
Conference papers hal-03187434v1

Population-specific variations of the genetic architecture of sex determination in wild European sea bass Dicentrarchus labrax L.

Sara Faggion , Marc Vandeputte , Béatrice Chatain , Pierre-Alexandre Gagnaire , François Allal
AQUA 2018, Aug 2018, Montpellier, France
Conference papers hal-03187154v1

La sélection génomique chez les poissons marins, pour quoi faire ?

François Allal , Pierrick Haffray , Marc Vandeputte
Journée du SFAMN (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2017, Montpellier, France
Conference papers hal-03155373v1

Heritability of boldness and hypoxia avoidance in European seabass, Dicentrarchus labrax

François Allal , Sebastien Ferrari , Khaled Horri , Alain Vergnet , David Benhaïm
Aquaculture Europe 2017, Oct 2017, Dubrovnik, Croatia
Conference papers hal-03156670v1

Sélectionner sur l’efficacité alimentaire : une nouvelle approche chez le bar

Mathieu Besson , François Allal , Béatrice Chatain , Alain Vergnet , Frédéric Clota
Journées Techniques du Sysaaf, Dec 2017, Rennes, France
Conference papers hal-03156749v1

Genetic variation of resistance to Viral Nervous Necrosis in wild populations of the European sea bass (Dicentrarchus labrax)

François Allal , Quoc Khanh Doan , Béatrice Chatain , Pierrick Haffray , Alain Vergnet
XVI Congreso nacional de Aquaculture, Oct 2017, Zaragoza, Spain. ⟨10.1016/j.aquaculture.2017.05.011⟩
Conference papers hal-03155395v1

Genetic variation of resistance to Viral Nervous Necrosis and genetic correlations with production traits in wild populations of the European sea bass (Dicentrarchus labrax)

Quoc Khanh Doan , Marc Vandeputte , Béatrice Chatain , Pierrick Haffray , Alain Vergnet
Aquaculture Europe 2017, Oct 2017, Dubrovnik, Croatia
Conference papers hal-03156682v1

GENESEA : développement de la sélection génomique chez le bar et la daurade

François Allal , Ronan Griot , Pierre-Alexandre Gagnaire , Christophe C. Klopp , Aline Bajek
Journées Techniques du Sysaaf, Dec 2017, Rennes, France
Conference papers hal-03156734v1

Efficacité d’une sélection pour la résistance au jeûne

François Allal , Marc Vandeputte , Alain Vergnet , Frédéric Clota , Mathieu Besson
Journées Techniques du Sysaaf, Dec 2017, Rennes, France
Conference papers hal-03156744v1

Implementing successful aquaculture breeding programs: the keys to success in France

Marc Vandeputte , François Allal , Mathilde Dupont-Nivet , Pierrick Haffray
XVI congreso nacional de acuicultura - Journée Franco Espagnole, Oct 2017, Saragosse, Spain
Conference papers hal-02734602v1
Image document

Peut-on sélectionner sur le rendement de filet chez les poissons ? (et chez le bar en particulier)

Marc Vandeputte , Clémence Fraslin , Jérôme Bugeon , François Allal , Antonio Puledda
Journée du SFAMN (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2017, Montpellier, France
Conference papers hal-03155369v1

Héritabilité de la résistance à la nécrose nerveuse virale de populations sauvages de Bar/Loup (Dicentrarchus labrax)

François Allal , Quoc Khanh Doan , Béatrice Chatain , Alain Vergnet , Gilles Breuil
Journées techniques du Sysaaf, Dec 2017, Rennes, France
Conference papers hal-03156758v1

Résistance au nodavirus chez le bar sauvage

François Allal , Quoc Khanh Doan , Béatrice Chatain , Alain Vergnet , Marc Vandeputte
Journée du SFAM (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2016, La Grande Motte, France
Conference papers hal-02796959v1

Utilisation d'imagerie et d'ultrasons pour l'amélioration du rendement en chair par sélection génétique de la daurade

Dofungo Ouatarra , Anastasia Bestin , Pierrick Haffray , Florian Enez , Sophie Cariou
5. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2016, Paris, France. pp.30
Conference papers hal-02741919v1

Efficacité alimentaire individuelle chez le bar

Sebastien Ferrari , Alain Vergnet , François Allal , Frédéric Clota , Béatrice Chatain
Journée Technique Piscicole du Sysaaf, Feb 2016, Paris, France
Conference papers hal-02798942v1

Prédicteurs morphologiques du rendement chez le bar: projet BAR3

Marc Vandeputte , Antonio Puledda , Anne Sophie Tyran , Anastasia Bestin , Céline Coulombet
Journée Technique Piscicole du Sysaaf, Feb 2016, Paris, France
Conference papers hal-02800398v1

Résistance génétique à l'entérite chez la truite ? Interaction avec la flavobactériose et les caractères de production

Anne-Sophie Tyran , Alexandre Desgranges , Anastasia Bestin , Florian Enez , François Allal
5. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2016, Paris, France
Conference papers hal-02743196v1

Genetic parameters of indirect predictors of gutted and fillet yields in the gilthead sea bream Sparus aurata in using 2D camera, 3D digitizer and ultrasound technologies

Pierrick Haffray , Dofungo Ouatarra , Sophie Cariou , Jean-Sébastien Bruant , Frederic Ventre
Aquaculture Europe 2016, Sep 2016, Edinburgh, United Kingdom. 1146 p
Conference papers hal-02741462v1

Résistance à la nodavirose des populations naturelles de bar

François Allal , Khanh Doan Q. , Alain Vergnet , Béatrice Chatain , Gilles Breuil
5e journées de la Recherche Filière piscicole, Jul 2016, paris, France
Conference papers hal-02795243v1

Investigation of genetic resistance to Viral Nervous Necrosis in European sea bass (Dicentrarchus labrax) using RAD sequencing

Christos Palaiokostas , Sophie Cariou , Anastasia Bestin , Jean-Sébastien Bruant , Pierrick Haffray
Aquaculture Europe 2016, Sep 2016, Edinburgh, United Kingdom
Conference papers hal-03155244v1
Image document

Combining VITASSIGN and COLONY : an efficient practical procedure for parental assignment with missing parents

Quoc Khanh Doan , Marc Vandeputte , Béatrice Chatain , Alain Vergnet , François Allal
ISGA XII, Jun 2015, Santiago de Compostela, Spain
Conference papers hal-01535335v1
Image document

Does early growth play a role in the sex determination of european seabass dicentrarchus labrax?

Marc Vandeputte , Khaled Horri , François Allal , Sebastien Ferrari , Marie-Odile Vidal
12th International Symposium on Genetics in Aquaculture (ISGA), Jun 2015, Santiago de Compostela, Spain. pp.1
Conference papers hal-02735070v1
Image document

Heritability of coping styles in farmed European sea bass

François Allal , Sebastien Ferrari , Khaled Horri , Marie-Odile Vidal , François Ruelle
12. International Symposium on Genetics in Aquaculture, Jun 2015, Santiago de Compostela, Spain. pp.1
Conference papers hal-02736002v1

The phenotypic and genetic links between early individual growth and sex determination in European sea bass

Marc Vandeputte , Khaled Horri , François Allal , Sebastien Ferrari , Marie-Odile Vidal
Aquaculture Europe 2015, Oct 2015, Rotterdam, Netherlands
Conference papers hal-01536551v1

Combining VITASSIGN and COLONY for pedigree reconstruction in a case of factorial mating with missing parental genotypes

François Allal , Q.K. Doan , Béatrice Chatain , Alain Vergnet , Marc Vandeputte
Aquaculture 2015: Cutting edge science in Aquaculture, Aug 2015, Montpellier, France
Conference papers hal-01535334v1

Selective breeding for resistance to Viral Nervous Necrosis disease: prospective procedure for sustainable development in aquaculture

Khanh Doan Q. , Marc Vandeputte , Béatrice Chatain , Thierry Morin , François Allal
Sustainable Fisheries Development Workshop, Nov 2015, Taiwan
Conference papers hal-02795348v1

Combining VITASSIGN and COLONY for pedigree reconstruction in a case of factorial mating with missing parental genotypes

François Allal , Quoc Khanh Doan , Beatrice Chatain , Alain Vergnet , Marc Vandeputte
Aquaculture Europe 2015, Oct 2015, Rotterdam, Netherlands
Conference papers hal-01535332v1

La personnalité du bar… un caractère héritable

François Allal , Sébastien Ferrari , Khaled Horri , Béatrice Chatain , Marc Vandeputte
Journée du SFAM (Syndicat Français de l'Aquaculture Marine et Nouvelle), Mar 2015, La Grande Motte, France
Conference papers hal-01535337v1

Etude de la croissance larvaire chez trois populations naturelles de bar (Dicentrarchus labrax) soumises à quatre régimes thermiques

Damien Crestel , Alain Vergnet , Marie-Odile Blanc , Stéphane Lallement , Frédéric Clota
7èmes Journées recherche Filière Piscicole, Jul 2022, Paris, France
Conference poster hal-04185425v1

Efficiency of genomic selection by imputation in sea bass and sea bream to improve processing traits and resistance to Viral Nervous Necrosis

Jonathan D’ambrosio , Anastasia Bestin , Mathieu Besson , Romain Morvezen , Aline Bajek
XIV. International Symposium on Genetics in Aquaculture, Nov 2022, Puerto Varas, Chile
Conference poster hal-04185895v1

Phenotypic characterization of the three main natural populations of seabass (Dicentrarchus labrax) on growth and quality traits performances

Alain Vergnet , Frédéric Clota , Edoh Denis , François Ruelle , Marie-Odile Blanc
Aquaculture Europe 2021, Oct 2021, Funchal, Portugal.
Conference poster hal-03360553v1

Aquakultor: le premier jeu de simulation en aquaculture

François Allal , Mathieu Besson , - Tomagamestudio
6. Journées de la Recherche Filière Piscicole, Jul 2019, Paris, France. 2019
Conference poster hal-02735109v1

Individual feed intake and body weight gain relationship according to genetic origin and rearing temperature in European sea bass Dicentrarchus labrax

Charles Rodde , Marc Vandeputte , François Allal , Mathieu Besson , Alain Vergnet
Aquaculture Europe 2019, Oct 2019, Berlin, Germany.
Conference poster hal-03187449v1

Accurate genomic prediction of phenotypic sex within European sea bass families : a unique tool to understand and control sex ratio variations in a species with polygenic sex determination

Marc Vandeputte , François Allal , Dafni Anastasiadi , Alexandre Vasilescu , Benjamin Geffroy
AQUA 2018, Aug 2018, Montpellier, France.
Conference poster hal-03187169v1

Development and characterization of a 57K Single Nucleotide Polymorphism array for European sea bass

François Allal , Maud Duranton , Romain Morvezen , Sophie Brard-Fudulea , Charles Poncet
AQUA 2018, Aug 2018, Montpellier, France
Conference poster hal-03187160v1
Image document

Selective breeding to reduce the ecological footprint of aquaculture

Marc Vandeputte , Mathieu Besson , François Allal , Florence Phocas , Edwige Quillet
Aquaculture Europe 2017, Oct 2017, Dubrovnik, Croatia.
Conference poster hal-03156701v1
Image document

A medium-throughput method to phenotype fish for individual feed efficiency

Mathieu Besson , François Allal , Béatrice Chatain , Alain Vergnet , Frédéric Clota
Aquaculture Europe 2017, Oct 2017, Dubrovnik, Croatia.
Conference poster hal-03155407v1

Sexe et croissance précoce chez le bar : des liens très étroits

Marc Vandeputte , Khaled Horri , François Allal , Sebastien Ferrari , Marie-Odile Vidal
5. Journées de la Recherche Filière Piscicole, Jul 2016, Paris, France. 2016
Conference poster hal-02795242v1

Mesurer l’efficacité alimentaire individuelle chez le bar ?

Sebastien Ferrari , Alain Vergnet , Frédéric Clota , Béatrice Chatain , François Allal
5emes Journées Recherche Filière Piscicole, Jul 2016, Paris, France.
Conference poster hal-03154832v1

Genomic Selection in AquacultureAquaculture Species

François Allal , Nguyen Hong Nguyen
Ahmadi; Nourollah and Bartholomé; Jérôme. Complex Trait Prediction: Methods and Protocols, Springer US, pp.469--491, 2022, Methods in Molecular Biology, 978-1-07-162205-6. ⟨10.1007/978-1-0716-2205-6_17⟩
Book sections hal-03679217v1