François Fenaille

Ingénieur-chercheur CEA Saclay
65%
Libre accès
193
Documents
Affiliations actuelles
  • Laboratoire Innovations en Spectrométrie de Masse pour la santé (LI-MS)
  • MetaboHUB-IDF
  • Service de Pharmacologie et Immunoanalyse (SPI)
  • Small molecule analysis and omics (SMART-OMICS)
  • MetaboHUB

Présentation

Ingénieur-chercheur

Domaines de recherche

Chimie analytique

Compétences

Spectrométrie de masse omiques

Publications

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Publications

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A biallelic variant in $GORASP1$ causes a novel Golgipathy with glycosylation and mitotic defects

Sophie Lebon , Arnaud Bruneel , Séverine Drunat , Alexandra Albert , Zsolt Csaba et al.
Life Science Alliance, 2025, 8 (4), pp.e202403065. ⟨10.26508/lsa.202403065⟩
Article dans une revue hal-04945549 v1
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Charge‐solvated versus protonated salt forms of cyclodepsipeptide toxins in electrospray: Dissociation of alkali‐cationized forms enables straightforward sequencing of cereulide

Sophie Liuu , Kam Eng Trinh , Ekaterina Darii , Chenqin Cao , Annelaure Damont et al.
Journal of Mass Spectrometry, 2024, 59 (6), pp.e5037. ⟨10.1002/jms.5037⟩
Article dans une revue hal-04578801 v1
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Uveitic glaucoma-like features in Yap conditional knockout mice

Juliette Bitard , Elodie-Kim Grellier , Sophie Lourdel , Helena Prior Filipe , Annaïg Hamon et al.
Cell Death Discovery, 2024, 10 (1), pp.48. ⟨10.1038/s41420-023-01791-6⟩
Article dans une revue hal-04442293 v1

Efficacy of oral manganese and D-galactose therapy in a patient bearing a novel TMEM165 variant

Zoé Durin , Alexandre Raynor , François Fenaille , Sophie Cholet , Sandrine Vuillaumier-Barrot et al.
Translational Research, The Journal of Laboratory and Clinical Medicine, 2024, 266, pp.57-67. ⟨10.1016/j.trsl.2023.11.005⟩
Article dans une revue hal-04399715 v1

High‐throughput untargeted screening of biotherapeutic macromolecules in equine plasma by UHPLC‐HRMS/MS : Application to monoclonal antibodies and Fc‐fusion proteins for doping control

Justine Pinetre , Vivian Delcourt , François Becher , Patrice Garcia , Agnès Barnabé et al.
Drug Testing and Analysis, 2024, 16 (2), pp.199-209. ⟨10.1002/dta.3525⟩
Article dans une revue hal-04403483 v1

Metabolomics Analysis of Rabbit Plasma after Ocular Exposure to Vapors of Sulfur Mustard

Jihéne Bouhlel , Fanny Caffin , Fanny Gros-Désormeaux , Thierry Douki , Jean-François Benoist et al.
Metabolites, 2024, 14 (7), pp.349. ⟨10.3390/metabo14070349⟩
Article dans une revue hal-04625280 v1

Biochemical diagnosis of congenital disorders of glycosylation

Alexandre Raynor , Walid Haouari , Elodie Lebredonchel , François Foulquier , François Fenaille et al.
Advances in Clinical Chemistry, 2024, Advances in Clinical Chemistry, 120, pp.1-43. ⟨10.1016/bs.acc.2024.03.001⟩
Article dans une revue hal-05003226 v1

Long-term exposure from perinatal life to food-grade TiO$_2$ alters intestinal homeostasis and predisposes to food allergy in young mice

Mohammad Issa , Chloé Michaudel , Marine Guinot , Marta Grauso , Blanche Guillon et al.
Allergy, 2024, 79 (2), pp.471-484. ⟨10.1111/all.15960⟩
Article dans une revue hal-04334514 v1
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Innovative direct introduction‐ion mobility–mass spectrometry (DI‐IM‐MS) approach for fast and robust isomer‐specific quantification in a complex matrix: Application to 2′‐fucosyllactose (2’‐FL) in breast milk

Estelle Rathahao-Paris , Sarah Abdoun , Alain Paris , Blanche Guillon , Eric Venot et al.
Journal of Mass Spectrometry, 2024, 59 (5), pp.e5026. ⟨10.1002/jms.5026⟩
Article dans une revue hal-04663876 v1

Nontargeted urine metabolomic analysis of acute intermittent porphyria reveals novel interactions between bile acids and heme metabolism: New promising biomarkers for the long‐term management of patients

Thibaud Lefebvre , Thibaut Eguether , Etienne Thévenot , Antoine Poli , Emeline Chu-Van et al.
Journal of Inherited Metabolic Disease, 2024, 48 (1), ⟨10.1002/jimd.12809⟩
Article dans une revue hal-04863195 v1

Interplatform comparison between three ion mobility techniques for human plasma lipid collision cross sections

Anaïs George , Isabelle Schmitz , Florent Rouvière , Sandra Alves , Benoit Colsch et al.
Analytica Chimica Acta, 2024, 1304, pp.342535. ⟨10.1016/j.aca.2024.342535⟩
Article dans une revue hal-04617221 v1

Evaluation of SP3 for antibody-free quantification of tau in CSF mimic and brain by mass spectrometry

Chloé Jacquemin , Nicolas Villain , Rita Azevedo , Susana Boluda , Etienne A Thévenot et al.
European Journal of Mass Spectrometry, 2024, 30 (1), pp.65-75. ⟨10.1177/14690667231218912⟩
Article dans une revue hal-04735796 v1

Energy Resolved Mass Spectrometry for Interoperable Non-resonant Collisional Spectra in Metabolomics

Amandine Hueber , Hanna Kulyk , Annelaure Damont , Edith Nicol , Sandra Alves et al.
Journal of The American Society for Mass Spectrometry, 2024, 35 (5), pp.834-838. ⟨10.1021/jasms.3c00410⟩
Article dans une revue hal-04543223 v1

Impact of Source Conditions on Collision Cross Section Determination by Trapped Ion Mobility Spectrometry

Anaïs George , Isabelle Schmitz , Benoit Colsch , Carlos Afonso , François Fenaille et al.
Journal of The American Society for Mass Spectrometry, 2024, 35 (4), pp.696-704. ⟨10.1021/jasms.3c00361⟩
Article dans une revue hal-05003197 v1
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Origin and characterization of cyclodepsipeptides: Comprehensive structural approaches with focus on mass spectrometry analysis of alkali‐cationized molecular species

Sophie Liuu , Annelaure Damont , Alain Perret , Olivier Firmesse , François Becher et al.
Mass Spectrometry Reviews, In press, ⟨10.1002/mas.21904⟩
Article dans une revue anses-04728384 v1

“Hide and seek”: Misleading transferrin variants in PMM2‐CDG complicate diagnostics

Alexandre Raynor , Arnaud Bruneel , Pieter Vermeersch , Sophie Cholet , Sebastian Friedrich et al.
PROTEOMICS - Clinical Applications, 2024, 18 (2), ⟨10.1002/prca.202300040⟩
Article dans une revue hal-04455072 v1
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An orally active carbon monoxide-releasing molecule enhances beneficial gut microbial species to combat obesity in mice

Djamal Eddine Benrahla , Shruti Mohan , Matija Trickovic , Florence Anne Castelli , Ghida Alloul et al.
Redox Biology, 2024, 72, pp.103153. ⟨10.1016/j.redox.2024.103153⟩
Article dans une revue hal-04651766 v1
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Blood Monocyte Phenotype Is A Marker of Cardiovascular Risk in Type 2 Diabetes

Jean-Baptiste Julla , Diane Girard , Marc Diedisheim , Pierre-Jean Saulnier , Bao Tran Vuong et al.
Circulation Research, 2024, 134 (2), pp.189-202. ⟨10.1161/circresaha.123.322757⟩
Article dans une revue hal-04534577 v1

Red blood cell metabolomics identify ergothioneine as a key metabolite in DMARD-naïve rheumatoid arthritis and response to methotrexate

Johanna Sigaux , Christophe Junot , Marie-Christophe Boissier , Mylène Petit , Magali Breckler et al.
Scientific Reports, 2024, 14 (1), pp.21005. ⟨10.1038/s41598-024-68477-6⟩
Article dans une revue hal-04863193 v1
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MilkOligoThesaurus, a dataset of mammalian milk oligosaccharide synonyms

Mathilde Rumeau , François Fenaille , Agnès Girard , Valentin Loux , Mouhamadou Ba et al.
Data in Brief, 2024, 54, pp.110404. ⟨10.1016/j.dib.2024.110404⟩
Article dans une revue hal-04552648 v1

Despite similar clinical features metabolomics reveals distinct signatures in insulin resistant and progressively obese minipigs

Imene Bousahba , Jérémie David , Florence A Castelli , Céline Chollet , Sadia Ouzia et al.
Journal of Physiology and Biochemistry, 2023, 79 (2), pp.397-413. ⟨10.1007/s13105-022-00940-2⟩
Article dans une revue hal-03941308 v1

Hydrogen/deuterium exchange mass spectrometry in the world of small molecules

Annelaure Damont , Anaïs Legrand , Chenqin Cao , François Fenaille , Jean‐claude Tabet
Mass Spectrometry Reviews, 2023, 42 (4), pp.1300-1331. ⟨10.1002/mas.21765⟩
Article dans une revue hal-04049803 v1

Sympathetic nervous activation, mitochondrial dysfunction and outcome in acutely decompensated cirrhosis: the metabolomic prognostic models (CLIF-C MET)

Emmanuel Weiss , Carlos de la Peña-Ramirez , Ferran Aguilar , Juan-Jose Lozano , Cristina Sánchez-Garrido et al.
Gut, 2023, 72 (8), pp.1581-1591. ⟨10.1136/gutjnl-2022-328708⟩
Article dans une revue hal-04403488 v1
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Development of an untargeted metabolomics strategy to study the metabolic rewiring of dendritic cells upon lipopolysaccharide activation

Jessica Michieletto , Aurélie Delvaux , Emeline Chu-Van , Christophe Junot , François Fenaille et al.
Metabolites, 2023, 13 (3), pp.311. ⟨10.3390/metabo13030311⟩
Article dans une revue hal-04398640 v1
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Correlative radioimaging and mass spectrometry imaging: a powerful combination to study 14 C-graphene oxide in vivo biodistribution

Hélène Cazier , Carole Malgorn , Dominique Georgin , Nathalie Fresneau , Fabrice Beau et al.
Nanoscale, 2023, 15 (11), pp.5510-5518. ⟨10.1039/D2NR06753F⟩
Article dans une revue hal-04465763 v1
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MAGT1 deficiency in XMEN disease is associated with severe platelet dysfunction and impaired platelet glycoprotein N-glycosylation

Alexandre Kauskot , Coralie Mallebranche , Arnaud Bruneel , François Fenaille , Jean Solarz et al.
Journal of Thrombosis and Haemostasis, 2023, ⟨10.1016/j.jtha.2023.05.007⟩
Article dans une revue hal-04106364 v1
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Scaling-up metabolomics: Current state and perspectives

Ghina Hajjar , Millena Cristina Barros Santos , Justine Bertrand-Michel , Cécile Canlet , Florence A Castelli et al.
Trends in Analytical Chemistry, 2023, 167 (20), pp.117225. ⟨10.1016/j.trac.2023.117225⟩
Article dans une revue (article de synthèse) hal-04188505 v1

Metabolomic profiling of cardiac allografts after controlled circulatory death

Thaïs Hautbergue , Florent Laverdure , Simon Dang Van , Aurelien Vallee , Mateo Sanchis-Borja et al.
The Journal of Heart and Lung Transplantation, 2023, 42 (7), pp.870-879. ⟨10.1016/j.healun.2023.02.1492⟩
Article dans une revue hal-04455530 v1
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Recent methodological developments in data-dependent analysis and data-independent analysis workflows for exhaustive lipidome coverage

Marie Valmori , Vincent Marie , François Fenaille , Benoit Colsch , David Touboul
Frontiers in Analytical Science, 2023, 3, ⟨10.3389/frans.2023.1118742⟩
Article dans une revue hal-04279997 v1
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Assessment of local and systemic signature of eosinophilic esophagitis (EoE) in children through multi-omics approaches

Karine Adel-Patient , Florence Campeotto , Marta Grauso , Blanche Guillon , Marco Moroldo et al.
Frontiers in Immunology, 2023, 14, pp.1108895. ⟨10.3389/fimmu.2023.1108895⟩
Article dans une revue hal-04032831 v1

Multiplex Detection of 24 Staphylococcal Enterotoxins in Culture Supernatant Using Liquid Chromatography Coupled to High-Resolution Mass Spectrometry

Donatien Lefebvre , Kevin Blanco-Valle , Jacques-Antoine Hennekinne , Stéphanie Simon , François Fenaille et al.
Toxins, 2022, 14 (4), pp.249. ⟨10.3390/toxins14040249⟩
Article dans une revue hal-04401761 v1
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The Human Meconium Metabolome and Its Evolution during the First Days of Life

Nihel Bekhti , Florence Castelli , Alain Paris , Blanche Guillon , Christophe Junot et al.
Metabolites, 2022, 12 (5), pp.414. ⟨10.3390/metabo12050414⟩
Article dans une revue hal-04008723 v1

A re-calibration procedure for interoperable lipid collision cross section values measured by traveling wave ion mobility spectrometry

Anaïs George , Isabelle Schmitz-Afonso , Vincent Marie , Benoit Colsch , François Fenaille et al.
Analytica Chimica Acta, 2022, 1226, pp.340236. ⟨10.1016/j.aca.2022.340236⟩
Article dans une revue hal-04403468 v1
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PeakForest: a multi-platform digital infrastructure for interoperable metabolite spectral data and metadata management

Nils Paulhe , Cécile Canlet , Annelaure Damont , Lindsay Peyriga , Stéphanie Durand et al.
Metabolomics, 2022, 18 (6), pp.40. ⟨10.1007/s11306-022-01899-3⟩
Article dans une revue hal-03695453 v1
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Cystine Uptake Inhibition Potentiates Front-Line Therapies In Acute Myeloid Leukemia

Bryann Pardieu , Justine Pasanisi , Frank Ling , Reinaldo Dal Bello , Justine Penneroux et al.
Leukemia, 2022, 36 (6), pp.1585-1595. ⟨10.1038/s41375-022-01573-6⟩
Article dans une revue hal-04053984 v1

Chronic Consumption of Cocoa Rich in Procyanidins Has a Marginal Impact on Gut Microbiota and on Serum and Fecal Metabolomes in Male Endurance Athletes

Mariangela Tabone , Jose Angel García-Merino , Carlo Bressa , Nuria Elizabeth Rocha Guzman , Karen Herrera Rocha et al.
Journal of Agricultural and Food Chemistry, 2022, 70 (6), pp.1878-1889. ⟨10.1021/acs.jafc.1c07547⟩
Article dans une revue hal-04403499 v1
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Metabolomics for personalized medicine: the input of analytical chemistry from biomarker discovery to point-of-care tests

Florence Anne Castelli , Giulio Rosati , Christian Moguet , Celia Fuentes , Jose Marrugo-Ramírez et al.
Analytical and Bioanalytical Chemistry, 2022, 414 (2), pp.759-789. ⟨10.1007/s00216-021-03586-z⟩
Article dans une revue hal-04008349 v1

Top-Down Mass Spectrometry for Trace Level Quantification of Staphylococcal Enterotoxin A Variants

Donatien Lefebvre , François Fenaille , Déborah Merda , Kevin Blanco-Valle , Cécile Feraudet-Tarisse et al.
Journal of Proteome Research, 2022, 21 (2), pp.547-556. ⟨10.1021/acs.jproteome.1c00886⟩
Article dans une revue hal-04401768 v1
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Using a multiomics approach to unravel a septic shock specific signature in skeletal muscle

Baptiste Duceau , Michael Blatzer , Jean Bardon , Thibault Chaze , Quentin Giai Gianetto et al.
Scientific Reports, 2022, 12 (1), pp.18776. ⟨10.1038/s41598-022-23544-8⟩
Article dans une revue hal-03996889 v1
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Mass Spectrometry for Neurobiomarker Discovery: The Relevance of Post-Translational Modifications

Rita Azevedo , Chloé Jacquemin , Nicolas Villain , François Fenaille , Foudil Lamari et al.
Cells, 2022, 11 (8), pp.1279. ⟨10.3390/cells11081279⟩
Article dans une revue hal-04403495 v1
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Early macrophage response to obesity encompasses Interferon Regulatory Factor 5 regulated mitochondrial architecture remodelling

L. Orliaguet , T. Ejlalmanesh , A. Humbert , R. Ballaire , M. Diedisheim et al.
Nature Communications, 2022, 13 (1), pp.5089. ⟨10.1038/s41467-022-32813-z⟩
Article dans une revue hal-03770463 v1
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Rapid structural characterization of human milk oligosaccharides and distinction of their isomers using trapped ion mobility spectrometry time‐of‐flight mass spectrometry

Estelle Rathahao-Paris , Aurélie Delvaux , Meijie Li , Blanche Guillon , Eric Venot et al.
Journal of Mass Spectrometry, 2022, 57 (10), 7 p. ⟨10.1002/JMS.4885⟩
Article dans une revue hal-03940699 v1
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First direct evidence of inter-partner hydride/deuteride exchanges for stored sodiated arginine/fructose-6-phosphate complex anions within salt-solvated structures

Ekaterina Darii , Yves Gimbert , Sandra Alves , Annelaure Damont , Alain Perret et al.
Journal of The American Society for Mass Spectrometry, 2021, 32 (6), pp.1424-1440. ⟨10.1021/jasms.1c00040⟩
Article dans une revue hal-03242854 v1
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Multiplatform metabolomics for an integrative exploration of metabolic syndrome in older men

Blandine Comte , Stéphanie Monnerie , Marion Brandolini-Bunlon , Cécile Canlet , Florence Castelli et al.
EBioMedicine, 2021, 69, ⟨10.1016/j.ebiom.2021.103440⟩
Article dans une revue hal-03283772 v1
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Right Ventricle Remodeling Metabolic Signature in Experimental Pulmonary Hypertension Models of Chronic Hypoxia and Monocrotaline Exposure

Thaïs Hautbergue , Fabrice Antigny , Angèle Boët , François Haddad , Bastien Masson et al.
Cells, 2021, 10 (6), pp.1559. ⟨10.3390/cells10061559⟩
Article dans une revue hal-04008302 v1
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Glutathione conjugates of the mercapturic acid pathway and guanine adduct as biomarkers of exposure to CEES, a sulfur mustard analog

Marie Roser , David Béal , Camille Eldin , Leslie Gudimard , Fanny Caffin et al.
Analytical and Bioanalytical Chemistry, 2021, 413, pp.1337-1351. ⟨10.1007/s00216-020-03096-4⟩
Article dans une revue hal-03103848 v1
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Arginine-selective modulation of the lysosomal transporter PQLC2 through a gate-tuning mechanism

Xavier Leray , Rossella Conti , Yan Li , Cécile Debacker , Florence Castelli et al.
Proceedings of the National Academy of Sciences of the United States of America, 2021, 118 (32), pp.e2025315118. ⟨10.1073/pnas.2025315118⟩
Article dans une revue hal-03320088 v1

H2B Type 1-K Accumulates in Senescent Fibroblasts with Persistent DNA Damage along with Methylated and Phosphorylated Forms of HMGA1

Kévin Contrepois , Carl Mann , François Fenaille
Proteomes, 2021, 9 (2), pp.30. ⟨10.3390/proteomes9020030⟩
Article dans une revue hal-04403508 v1

Evaluation of erythropoietin biosimilars Epotin™, Hemax® and Jimaixin™ by electrophoretic methods used for doping control analysis and specific N-glycan analysis revealed structural differences from original epoetin alfa drug Eprex®

Perrine Capdeville , Laurent Martin , Sophie Cholet , Annelaure Damont , Michel Audran et al.
Journal of Pharmaceutical and Biomedical Analysis, 2021, 194, pp.113750. ⟨10.1016/j.jpba.2020.113750⟩
Article dans une revue hal-04455012 v1
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The Adipose Microenvironment Dysregulates the Mammary Myoepithelial Cells and Could Participate to the Progression of Breast Cancer

Laetitia Delort , Juliette Cholet , Caroline Decombat , Marion Vermerie , Charles Dumontet et al.
Frontiers in Cell and Developmental Biology, 2021, 8, pp.571948. ⟨10.3389/fcell.2020.571948⟩
Article dans une revue hal-03176039 v1
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Combining chemical knowledge and quantum calculation for interpreting low-energy product ion spectra of metabolite adduct ions: Sodiated diterpene diester species as a case study

Jean-Claude Tabet , Yves Gimbert , Annelaure Damont , David Touboul , François Fenaille et al.
Journal of The American Society for Mass Spectrometry, 2021, 32 (10), pp.2499-2504. ⟨10.1021/jasms.1c00154⟩
Article dans une revue hal-03328447 v1
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Metabolomics in the understanding and management of hepatic encephalopathy

Juliette Pelle , Florence A Castelli , Marika Rudler , Imen Alioua , Benoit Colsch et al.
Analytical Biochemistry, 2021, 636, ⟨10.1016/j.ab.2021.114477⟩
Article dans une revue (article de synthèse) hal-03981510 v1
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ProMetIS, deep phenotyping of mouse models by combined proteomics and metabolomics analysis

Alyssa Imbert , Magali Rompais , Mohammed Selloum , Florence Castelli , Emmanuelle Mouton-Barbosa et al.
Scientific Data , 2021, 8 (1), pp.311. ⟨10.1038/s41597-021-01095-3⟩
Article dans une revue pasteur-03453736 v1
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Trapped ion mobility spectrometry time-of-flight mass spectrometry for high throughput and high resolution characterization of human milk oligosaccharide isomers

Aurélie Delvaux , Estelle Rathahao-Paris , Blanche Guillon , Sophie Cholet , Karine Adel-Patient et al.
Analytica Chimica Acta, 2021, 1180, pp.338878. ⟨10.1016/j.aca.2021.338878⟩
Article dans une revue hal-03533998 v1
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Evidence for the systemic diffusion of (2-chloroethyl)-ethyl-sulfide, a sulfur mustard analog, and its deleterious effects in brain

Marie Gilardoni , Daniel Léonço , Fanny Caffin , Fanny Gros-Désormeaux , Camille Eldin et al.
Toxicology, 2021, 462, ⟨10.1016/j.tox.2021.152950⟩
Article dans une revue hal-03345961 v1
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Development and evaluation of an immuno-MALDI-TOF mass spectrometry approach for quantification of the abrin toxin in complex food matrices

Sandrine Livet , Sylvia Worbs , Hervé Volland , Stéphanie Simon , Martin Dorner et al.
Toxins, 2021, 13, pp.52. ⟨10.3390/toxins13010052⟩
Article dans une revue hal-03352977 v1
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Assessing the role of amino acids in systemic inflammation and organ failure in patients with ACLF

Giacomo Zaccherini , Ferran Aguilar , Paolo Caraceni , Joan Clària , Juan José Lozano et al.
Journal of Hepatology, 2021, 74 (5), pp.1117-1131. ⟨10.1016/j.jhep.2020.11.035⟩
Article dans une revue hal-03351392 v1
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SLC37A4-CDG: New biochemical insights for an emerging congenital disorder of glycosylation with major coagulopathy

Alexandre Raynor , Walid Haouari , Bobby Ng , Sophie Cholet , Annie Harroche et al.
Clinica Chimica Acta, 2021, 521, pp.104-106. ⟨10.1016/j.cca.2021.07.005⟩
Article dans une revue hal-04455053 v1
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MAN1B1-CDG: Three new individuals and associated biochemical profiles

Soraya Sakhi , Sophie Cholet , Samer Wehbi , Bertrand Isidor , Benjamin Cogné et al.
Molecular Genetics and Metabolism Reports, 2021, 28, pp.100775. ⟨10.1016/j.ymgmr.2021.100775⟩
Article dans une revue hal-04403521 v1
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Mitochondrial metabolism supports resistance to IDH mutant inhibitors in acute myeloid leukemia

Lucille Stuani , Marie Sabatier , Estelle Saland , Guillaume Cognet , Nathalie Poupin et al.
Journal of Experimental Medicine, 2021, 218 (5), pp.e20200924. ⟨10.1084/jem.20200924⟩
Article dans une revue hal-03563454 v1

Piezo1-xerocytosis red cell metabolome shows impaired glycolysis and increased hemoglobin oxygen affinity

Laurent Kiger , Lydie Oliveira , Corinne Guitton , Laurence Bendélac , Kaldoun Ghazal et al.
Blood Advances, 2021, 5 (1), pp.84-88. ⟨10.1182/bloodadvances.2020003028⟩
Article dans une revue inserm-03218685 v1
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Untargeted lipidomics uncovers lipid signatures that distinguish severe from moderate forms of acutely decompensated cirrhosis

Joan Clària , Anna Curto , Richard Moreau , Benoit Colsch , Cristina López-Vicario et al.
Journal of Hepatology, 2021, 75 (5), pp.1116-1127. ⟨10.1016/j.jhep.2021.06.043⟩
Article dans une revue hal-04008385 v1

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Guest editor's personal foreword

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Jérôme Chenau , François Fenaille , Valérie Caro , Michel Haustant , Laure Diancourt et al.
Molecular and Cellular Proteomics, 2014, 13 (3), pp.716-732. ⟨10.1074/mcp.M113.032946⟩
Article dans une revue hal-04403928 v1

Bacterial Detection Using Unlabeled Phage Amplification and Mass Spectrometry through Structural and Nonstructural Phage Markers

Armelle Martelet , Guillaume L’hostis , Paulo Tavares , Sandrine Brasilès , François Fenaille et al.
Journal of Proteome Research, 2014, 13 (3), pp.1450--1465. ⟨10.1021/pr400991t⟩
Article dans une revue hal-01664183 v1

Annotation of the human serum metabolome by coupling three liquid chromatography methods to high-resolution mass spectrometry

Samia Boudah , Marie-Françoise Olivier , Sandrine Aros-Calt , Lydie Oliveira , François Fenaille et al.
Journal of Chromatography B - Analytical Technologies in the Biomedical and Life Sciences, 2014, 966, pp.34-47. ⟨10.1016/j.jchromb.2014.04.025⟩
Article dans une revue hal-04403915 v1

High resolution mass spectrometry based techniques at the crossroads of metabolic pathways

Christophe Junot , François Fenaille , Benoit Colsch , François Bécher
Mass Spectrometry Reviews, 2013, 33 (6), pp.471-500. ⟨10.1002/mas.21401⟩
Article dans une revue istex hal-04403933 v1
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High throughput screening identifies disulfide isomerase DsbC as a very efficient partner for recombinant expression of small disulfide-rich proteins in E. coli

Hervé Nozach , Carole Fruchart-Gaillard , François Fenaille , Fabrice Beau , Oscar Pereira Ramos et al.
Microbial Cell Factories, 2013, 12, ⟨10.1186/1475-2859-12-37⟩
Article dans une revue cea-02100032 v1

Chromatin-to-nucleoprotamine transition is controlled by the histone H2B variant TH2B

Emilie Montellier , Fayçal Boussouar , Sophie Rousseaux , Kai Zhang , Thierry Buchou et al.
Genes and Development, 2013, 27 (15), pp.1680-1692. ⟨10.1101/gad.220095.113⟩
Article dans une revue hal-01322388 v1

Deacetylation of H4-K16Ac and heterochromatin assembly in senescence

Kévin Contrepois , Jean-Yves Thuret , Régis Courbeyrette , François A Fenaille , Carl Mann
Epigenetics and Chromatin, 2012, 5 (1), pp.15. ⟨10.1186/1756-8935-5-15⟩
Article dans une revue cea-01616195 v1

Rapid Quantification of Clostridial Epsilon Toxin in Complex Food and Biological Matrixes by Immunopurification and Ultraperformance Liquid Chromatography-Tandem Mass Spectrometry

Alexandre Seyer , François A Fenaille , Cecile Féraudet-Tarisse , Hervé Volland , Michel Popoff et al.
Analytical Chemistry, 2012, 84 (11), pp.5103 - 5109. ⟨10.1021/ac300880x⟩
Article dans une revue pasteur-01762925 v1

Modifications of milk constituents during processing: A preliminary benchmarking study

F. Fenaille , V. Parisod , P. Visani , S. Populaire , J.-C. Tabet et al.
International Dairy Journal, 2006, 16, pp.728-739
Article dans une revue hal-00120860 v1

Carbonylation of milk powder proteins as a consequence of processing conditions.

F. Fenaille , V. Parisod , J.-C. Tabet , P. A. Guy
Proteomics, 2005, 5(12), pp.3097-3104
Article dans une revue hal-00021887 v1
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Conversion from metabolomics raw data to open format: ensuring MS and MS/MS data quality and software compatibility

Quentin Ruin , Delphine Centeno , Charlotte Joly , Marie Lagree , Stéphanie Durand et al.
16èmes Journées Scientifiques du Réseau Francophone de Métabolomique et de Fluxomique, Jun 2024, St Malo, France
Poster de conférence hal-04611713 v1
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Development of a high-throughput and high-metabolome coverage UHPLC-HRMS method for the accurate profiling of large clinical cohorts

Fontenelle Imma , Teddy Hiba , Chollet Céline , Chu-Van Emeline , Dechaumet Sylvain et al.
RFMF 2024 - 16ème congrès national du réseau francophone de métabolomique et fluxomique, Jun 2024, Saint-Malo, France.
Poster de conférence hal-04836494 v1

Automatic search for chemical exposure markers in LC-HRMS metabolomic data

Dylan Saunier , Eric Venot , Sylvain Dechaumet , N Behkti , Blanche Guillon et al.
15èmes Journées Scientifiques du Réseau Francophone de Métabolomique et Fluxomique, May 2023, Perpignan, France
Poster de conférence hal-04644047 v1
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Influence of FUT2/FUT3 polymorphism on human breastmilk oligosaccharide composition in the EDEN mother-child cohort

Eric Venot , Sylvain Dechaumet , Blanche Guillon , Mikaïl Berdi , Sophie Cholet et al.
Journées scientifiques du Réseau Francophone de Métabolomique et Fluxomique, May 2023, Perpignan, France
Poster de conférence hal-04351464 v1
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Isotope-assisted metabolomics for the quantification of plasma metabolites: A preliminary inter-laboratory trial

Ghina Hajjar , Victor Gaignard , Stéphanie Durand , Delphine Centeno , Blandine Comte et al.
15e Journées Scientifiques du Réseau Francophone de Métabolomique et de Fluxomique (RFMF), May 2023, Perpignan, France
Poster de conférence hal-04127934 v1

Deciphering of retinoid metabolic and signaling pathways using bio-orthogonal chemistry strategies

Alexia Kindler , Jessica Coulleray , Ahmad Naim , Benoit Colsch , François Fenaille et al.
47th FEBS Congress 2023, Jul 2023, Tours, France
Poster de conférence hal-04941716 v1
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High throughput separation of chiral molecules using non-covalent complexes and SIM2 analysis on a TIMS-ToF

Sandra Alves , Clément Chalet , Estelle Rathahao-Paris , Chenqin Cao , Denis Lesage et al.
15émes journées scientifiques du RFMF, May 2023, Perpignan, France
Poster de conférence hal-04862041 v1

Analyse du métabolome pulmonaire chez les enfants asthmatiques sévères

Mélanie Briard , Blanche Guillon , Eric Venot , Marta Grauso , François Fenaille et al.
Congrès francophone d’allergologie, Apr 2023, Paris, France. Revue Française d'Allergologie, 63 (3), pp.4, 2023, ⟨10.1016/j.reval.2023.103568⟩
Poster de conférence hal-04276720 v1

Plasma metabolomics reveal metabolite changes compatible with improved metabolic health after 1-month of a plant-rich dietary intervention

Gaïa Lépine , Marie Tremblay-Franco , François Mariotti , Jérémie David , Marion Courrent et al.
NuGOweek 2023, Sep 2023, Senigallia, Italy
Poster de conférence hal-04211898 v1
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Enhancing structural elucidation of the lipidome through optimized SFC-HRMS/MS hyphenation

Marie Valmori , Vincent Marie , François Fenaille , Benoit Colsch , David Touboul
39th French Days of Mass Spectrometry, Sep 2023, Gif-sur-Yvette, France.
Poster de conférence hal-04647490 v1
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Stereospecific recognition of amino acids in quaternary coppered complexes via enantioselective reduction

Clément Chalet , Ekaterina Darii , Denis Lesage , Estelle Rathahao-Paris , Yves Gimbert et al.
IMSC 2022 - 2022 International Mass Spectrometry Conference, Aug 2022, Maastricht, Netherlands. , IMSC-2022-POSTER-ABSTRACTS
Poster de conférence hal-04402557 v1
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Development of an automated bioinformatic workflow to assess oligosaccharide composition of early breast milk samples from LC-HRMS data

Eric Venot , Sylvain Dechaumet , Blanche Guillon , Mikaïl Berdi , Ghita Tajeddine et al.
Journées scientifiques du Réseau Francophone de Fluxomique et de Métabolomique, Nov 2021, AUSSOIS, France
Poster de conférence hal-04351512 v1
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Identification of Metabolic Biomarkers predictive of the severity of COVID-19 in hospitalized patients

Audrey Le Gouellec , Sylvie Berthier , Candice Trocme , V. Cunin , Florence Castelli et al.
14èmes JS RFMF, Nov 2021, Aussois, France
Poster de conférence hal-04959019 v1

Integrated Multi-omics of early breast milk constituents

Camilo Broc , Karine Adel-Patient , François Fenaille , Mikaïl Berdi , Eric Venot et al.
Intelligent Systems for Molecular Biology/European Conference on computaional biology, Jul 2021, Virtuel, France
Poster de conférence hal-03739277 v1

Glutathione conjugates as biomarkers of the systemic diffusion of vesicating agents

Thierry Douki , Marie Gilardoni , Clara-Lou Kang , Christophe Pierard , Fanny Caffin et al.
CBRNE Research and Innovation 5th International Conference, May 2020, Lille, France. 2020
Poster de conférence hal-03662418 v1
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INPUT OF DEEP PHENOTYPING IN THE METABOLIC SYNDROME STRATIFICATION

Stéphanie Monnerie , Mélanie Pétéra , Cécile Canlet , Florence Castelli , Benoit Colsch et al.
European RFMF Metabomeeting 2020, Jan 2020, Toulouse, France. , 262 p., 2020, Oral and Poster Abstracts European RMF Metabomeeting 2020
Poster de conférence hal-02505908 v1

Compared to animal proteins, plant proteins induce metabolic reorientations that ensure protein homeostasis and are associated with a reduced high-fat-induced insulin resistance

Sergio Polakof , Gaïa Lépine , Véronique Mathé , Jérémie David , Didier Remond et al.
NuGOweek 2019, Sep 2019, Berne, Switzerland
Poster de conférence hal-04443316 v1
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From Molecular Profiling to Precision Medicine in Metabolic Syndrome

Blandine Comte , Stéphanie Monnerie , Marion Brandolini-Bunlon , Cécile Canlet , Florence Castelli et al.
15th Annual Conference of the Metabolomics Society (Metabolomics 2019), Jun 2019, La Haye, Netherlands. 300 p., 2019
Poster de conférence hal-02293580 v1
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The HDX approach to evidence the stepwise character of controlled enantioselective reduction of copper II complexes with polar amino acids

Ekaterina Darii , Annelaure Damont , Denis Lesage , Sandra Alves , Alain Perret et al.
67th ASMS Conference on Mass Spectrometry and Allied Topics, Jun 2019, Atlanta, United States.
Poster de conférence hal-04401368 v2
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Impaired postprandial skeletal muscle metabolism in a minipig model of insulin resistance: insights from arteriovenous and biopsy-based metabolomics analyses

Marie Tremblay-Franco , Nathalie Poupin , Florence Castelli , Jérémie David , Marianne Jarzaguet et al.
12. Journées Scientifiques du Réseau Francophone de Métabolomique et Fluxomique RFMF, May 2019, Clermont-Ferrand, France. 168 p., 2019, Livre des résumés
Poster de conférence hal-02285596 v1
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Evidence for reversible internal hydride/deuteride transfers from sodiated deprotonated fructose-6-phosphate and arginine complex with solvated salt structure

Ekaterina Darii , Sandra Alves , Yves Gimbert , Annelaure Damont , Alain Perret et al.
67th ASMS Conference on Mass Spectrometry and Allied Topics, Jun 2019, Atlanta, United States. , Proceedings of the 67th ASMS Conference on Mass Spectrometry and Allied Topics (online)
Poster de conférence hal-04398652 v1

Étude longitudinale du métabolome de Pseudomonas aeruginosa au cours des infections pulmonaires chroniques dans la mucoviscidose

O Moyne , B Cournoyer , F Castelli , F Fenaille , P Lamourette et al.
Conférence de Spectrométrie de Masse, Métabolomique et Fluxomique & Electrophorèse et Analyse Protéomique (SMMAP), Oct 2017, Marne-la-Vallée, France. pp.424, Livret des résumés
Poster de conférence hal-02063135 v1

Development of a standard protocol for high-throughput metabolome profiling of urine using DI-ESI coupled with FT-ICR MS

Baiyi Xue , Sandra Alves , Jean-Claude Tabet , Richard B. Cole , Alain Paris et al.
62. ASMS Conference on Mass Spectrometry and Allied Topics, Jun 2014, Baltimore, United States. 2014
Poster de conférence hal-01433700 v1

Développement d’une méthode d'analyse métabolomique par introduction directe des échantillons biologiques sur un spectromètre de masse à très haute résolution

Baiyi Xue , Sandra Alves , Alain Paris , François Fenaille , Benoit Colsh et al.
8. Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique, May 2014, Lyon, France. , 160 p., 2014, Huitièmes Journées Scientifiques du Réseau Français de Métabolomique et Fluxomique Communications Orales
Poster de conférence hal-01433702 v1
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Non-negative matrix factorization of SWATH DIA data improves global metabolite identification

Diana Karaki , Sylvain Dechaumet , Annelaure Damont , Benoit Colsch , François Fenaille et al.
EUSIPCO 2024 - 32nd European Signal Processing Conference, Aug 2024, Lyon, France
Communication dans un congrès hal-04802338 v1

L’exploration des échanges inter-organes par métabolomique artérioveineuse offre une perspective unique pour comprendre les perturbations métaboliques sous-jacentes dans l’installation de l'obésité et de l'insulino-résistance chez les miniporcs

Imene Bousahba , Jérémie David , Florence Castelli , Céline Chollet , François Fenaille et al.
Journées Francophones de Nutrition, SFN, Dec 2023, Marseille, France
Communication dans un congrès hal-04667070 v1

Exploring the impact of plant protein vs. animal protein-rich diets in men at cardiometabolic risk: insights from plasma metabolome signatures

Gaïa Lépine , Marie Tremblay-Franco , François Mariotti , Jérémie David , Marion Courrent et al.
3rd Nordic Metabolomics Conference, Oct 2023, Trondheim, Norway
Communication dans un congrès hal-04354565 v1

Arteriovenous metabolomic approach reveals specific metabolite exchanges across organs and provides unique insights for understanding underlying metabolic perturbations in obese and insulin-resistant minipigs

Imene Bousahba , Jérémie David , Florence Castelli , Céline Chollet , François Fenaille et al.
15eme Journées Scienfitiques du Réseau Français de Métabolomique et Fluxomique, RFMF, May 2023, Perpignan, France
Communication dans un congrès hal-04666938 v1

Metabolomic analysis of bronchoalveolar lavages from severe asthmatic children

Mélanie Briard , Blanche Guillon , Eric Venot , François Fenaille , Florence A Castelli et al.
European Academy of Allergu and Clinical Immunology Congress 2023, European Academy of Allergu and Clinical Immunology, Jun 2023, Hamburg (D), Germany
Communication dans un congrès hal-04276775 v1

Analyse du métabolome pulmonaire chez les enfants asthmatiques sévères

M. Briard , Blanche Guillon , E. Venot , F. Fenaille , F. Castellli et al.
Congrès Francophone d'allergologie, Apr 2023, Paris, France. 1p., ⟨10.1016/j.reval.2023.103568⟩
Communication dans un congrès hal-04280483 v1
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VARIABILITE DE LA COMPOSITION EN OLIGOSACCHARIDES DU LAIT ET LIEN AVEC LA CARRIERE REPRODUCTIVE DES LAPINES ET LA VIABILITE DES LAPEREAUX AU SEVRAGE

Sylvie Combes , Virginie Helies , Marine Paccanelli , Claude Lille-Laroucau , Julien Ruesche et al.
19ème Journées de la Recherche Cunicole, ITAVI, Mar 2023, Le Mans (72000), France. pp.86-90
Communication dans un congrès hal-04580177 v1
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Modelling the muscle metabolic response in anabolic and catabolic states using arterio-venous blood metabolomics profiles

Nathalie Poupin , Florence A Castelli , Emeline Chu-Van , Didier Remond , Dominique Dardevet et al.
8. Conference on Constraint-Based reconstruction and Analysis (COBRA 2022), Sep 2022, Galway, Ireland
Communication dans un congrès hal-03807737 v1
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Innovative porous materials for enhanced glycomic analysis

M Maleval , D Ferry , S Cholet , C Andasse , M Mayne-l'Hermite et al.
SolGel2022, Jul 2022, Lyon, France
Communication dans un congrès cea-03744845 v1

YAP protects the eye from uveitic glaucoma by preserving retinal and anterior chamber homeostases

Juliette Bitard , Elodie-Kim Grellier , Sophie Lourdel , Helena Filipe , Annaïg Hamon et al.
ARVO Annual Meeting, May 2021, Virtual meeting, United States. pp.2356
Communication dans un congrès hal-03361191 v1
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Insights from metabolomic and molecular signatures to detect, in a blood sample, muscle anabolic resistance associated with catabolic situation. Case model of glucocorticoids effect in mini-pigs

Sergio Polakof , Marie Tremblay-Franco , Nathalie Poupin , Florence Castelli , Jérémie David et al.
Fifth International Congress of Translational Research in Human Nutrition (ICTRHN), Jun 2019, Clermont-Ferrand, France
Communication dans un congrès hal-02154641 v1

Monosodium Urate and Calcium Pyrophosphatecrystal-induced Interleukin 1 Production Depends on Glucose Uptake Through Glut1 Transporter

Félix Renaudin , Laure Campillo-Gimenez , Florence Castelli , François Fenaille , Aurélie Prignon et al.
2019 ACR/ARP Annual Meeting, Nov 2019, Atlanta (GA), United States. pp.233, ⟨10.1136/annrheumdis-2019-eular.4235⟩
Communication dans un congrès hal-05010505 v1
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Développement de matériaux poreux hybrides innovants pour l'analyse glycomique

M Maleval , M. Mayne-L'Hermite , F Fenaille , L Mugherli
Journées sol-gel 2019, Oct 2019, Tours, France
Communication dans un congrès cea-02329065 v1

Data acquisition workflows in liquid chromatography coupled to high resolution mass spectrometry-based metabolomics: Where do we stand?

François Fenaille , Pierre Barbier Saint Hilaire , Kathleen Rousseau , Christophe Junot
12th Francophone Congress on Separative Sciences and Analytical, Mar 2017, Paris, France. pp.12, ⟨10.1016/j.chroma.2017.10.043⟩
Communication dans un congrès hal-02738411 v1

Development of a standard protocol for high-throughput metabolomic fingerprinting of biofluids using FIA- and Nano-ESI coupled with FT-ICR MS

Baiyi Xue , Sandra Alves , François Fenaille , Benoit Colsh , Jean-Claude Tabet et al.
TGE FT-ICR Users’ Meeting, May 2014, Paris, France
Communication dans un congrès hal-01435384 v1

Empreintes métabolomiques à haut débit sur un instrument FT-ICR-MS - High-throughput metabolomic fingerprinting by FT-ICR-MS

Alain Paris , Baiyi Xue , Sandra Alves , François Fenaille , Benoit Colsh et al.
Bruker Daltonics Users’ Meeting, Nov 2014, Paris, France
Communication dans un congrès hal-01435382 v1
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ProMetIS 2.0: proteomics and metabolomics data analysis and integration, applied to the characterization of the Lat and Mx2 knock-out phenotypes

Oneeb Nasir , Alyssa Imbert , Sylvain Dechaumet , Pierrick Roger , Thomas Burger et al.
Journées Ouvertes en Biologie, Informatique, et Mathématiques (JOBIM 2024), Société Française de BioInformatique (SFBI); Institut Français de Bioinformatique (IFB); Groupement de Recherche Bioinformatique Moléculaire, Jun 2024, Toulouse, France
Communication dans un congrès hal-05035118 v1

Metabolomic Investigation of Staphylococcus aureus Antibiotic Susceptibility by Liquid Chromatography Coupled to High-Resolution Mass Spectrometry

Sandrine Aros-Calt , Florence Castelli , Patricia Lamourette , Gaspard Gervasi , Christophe Junot et al.
Functional Proteomics, 1871, Springer New York, pp.279-293, 2019, Methods in Molecular Biology, ⟨10.1007/978-1-4939-8814-3_18⟩
Chapitre d'ouvrage hal-04403545 v1

Metabolomics using Fourier transform mass spectrometry

Christophe Junot , François Fenaille
Philippe Schmitt-Kopplin; Basem Kanawati. Fundamentals and Applications of Fourier Transform Mass Spectrometry, Elsevier, 778 p., 2019, 9780128140130 ; 9780128140147. ⟨10.1016/B978-0-12-814013-0.00011-9⟩
Chapitre d'ouvrage hal-03176035 v1

Detection of Yersinia pestis in Complex Matrices by Intact Cell Immunocapture and Targeted Mass Spectrometry

Jérôme Chenau , François Fenaille , Stéphanie Simon , Sofia Filali , Hervé Volland et al.
Microbial Toxins, 1600, Springer New York, pp.69-83, 2017, Methods in Molecular Biology, 978-1-4939-6956-2. ⟨10.1007/978-1-4939-6958-6_7⟩
Chapitre d'ouvrage hal-04403877 v1

N-glycomics and N-glycoproteomics of human cerebrospinal fluid

Sophie Cholet , Arnaud Goyallon , Christophe Junot , François Fenaille
Current Proteomic Approaches Applied to Brain Function, 127, Humana Press, 360 p., 2017, Neuromethods, 978-1-4939-7119-0 978-1-4939-7118-3. ⟨10.1007/978-1-4939-7119-0_10⟩
Chapitre d'ouvrage hal-02790552 v1