
Francois Sabot
- Diversité, adaptation, développement des plantes (UMR DIADE)
- Diversité, adaptation, développement des plantes (UMR DIADE)
Présentation
From an initial formation in Molecular Genetics and Physiology, I went during my PhD on Transposable Elements, working on large plant genomes at INRA, France. During my Post-Doc at university of Helsinki, I worked on mechanics, structure and evolution of TEs, in lab then in bioinformatics and NGS. My current research interest in the French National institute for Sustainable Development (IRD) is the Pangenomics modification during speciation/domestication, especially regarding TEs, in various genomes. In this regard, I explore with my team the pangenome in all aspects: creation, modification, graph theory, vizualisation, and so on... In parallel, I spent (and continue to) large efforts on open science, through open source development, open access publication and open data dissemination, as the deputy director of the Open Science mission at IRD.
Publications
Publications
Une histoire de la génomique des riz cultivésPelletier, G. (ed.). Génétique des domestications, ISTE, pp.183-197, 2024, Biologie : Génétique, Epigénétique, 978-1-7894-8167-9. ⟨10.51926/ISTE.9167.ch10⟩
Chapitre d'ouvrage
hal-04768659
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Pangenomics in crop plantsRajora, O.P. (ed.). Population genomics : crop plants, Springer, pp.3-35, 2020, Population Genomics, 978-3-031-63001-9. ⟨10.1007/13836_2020_84⟩
Chapitre d'ouvrage
hal-04649495
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Diving, and even diging, into the wild jungle of annotation pathways for non-vertebrate animals2022, pp.100016. ⟨10.24072/pci.genomics.100016⟩
Autre publication scientifique
hal-03661538
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Using small fragments to discover old TE remnants: the Duster approach empowers the TE detection2021, pp.100004. ⟨10.24072/pci.genomics.100004⟩
Autre publication scientifique
hal-03146002
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GrAnnoT, a tool for efficient and reliable annotation transfer through pangenome graph2025
Pré-publication, Document de travail
(preprint/prepublication)
hal-05162236
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Identification and quantification of transposable element transcripts using Long-Read RNA-seq in <i>Drosophila</i> germline tissues2024
Pré-publication, Document de travail
hal-04791876
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Transposable elements as evolutionary driving force to host shift in cactophilic Drosophila species2025
Pré-publication, Document de travail
hal-05060068
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Biological and genomic resources for the cosmopolitan phytoplankton<i>Bathycoccus</i>: Insights into genetic diversity and major structural variations2023
Pré-publication, Document de travail
(preprint/prepublication)
hal-04286701
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Rapport du groupe de travail sur les cahiers de laboratoires électroniques[Rapport de recherche] Comité pour la science ouverte. 2021, 68 p
Rapport
(rapport de recherche)
hal-03563244
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Report of the Working Group on Electronic Lab NotebooksComité pour la science ouverte. 2021
Rapport
hal-03959882
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Caracterisation et évolution des éléments transposables au sein du génome des espèces du complexe Triticum/AegilopsSciences du Vivant [q-bio]. Université Blaise Pascal (Clermont Ferrand 2), 2004. Français. ⟨NNT : ⟩
Thèse
tel-02825519
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