François Thomas

45
Documents
Affiliation actuelle
  • Laboratoire de Biologie Intégrative des Modèles Marins (LBI2M)

Publications

Publications

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Evolutionary history and association with seaweeds shape the genomes and metabolisms of marine bacteria

Catherine A. Pfister , Johanna Berlinghof , Maximiliana Bogan , Ulisse Cardini , Angelique Gobet et al.

MSphere, 2025, 10 (6), pp.e00996--24. ⟨10.1128/msphere.00996-24⟩

Article dans une revue hal-05195842v1
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Year-round quantification, structure and dynamics of epibacterial communities from diverse macroalgae reveal a persistent core microbiota and strong host specificities

Maéva Brunet , Nolwen Le Duff , Tristan Barbeyron , François Thomas

Environmental Microbiology Reports, 2025, ⟨10.1111/1758-2229.70077⟩

Article dans une revue hal-04785077v2
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Unveiling the role of novel carbohydrate‐binding modules in laminarin interaction of multimodular proteins from marine Bacteroidota during phytoplankton blooms

Marie-Katherin Zühlke , Elizabeth Ficko-Blean , Daniel Bartosik , Nicolas Terrapon , Alexandra Jeudy et al.

Environmental Microbiology, 2024, 26 (5), pp.e16624. ⟨10.1111/1462-2920.16624⟩

Article dans une revue hal-04579759v1
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A review on the chemical ecology of the Fucaceae holobionts: from fundamental knowledge to applications

Coralie Rousseau , Gautier Demoulinger , Sylvie Rousvoal , Delphine Champeval , Maurane Dolly et al.

Comptes Rendus. Chimie, 2024, 26 (S2), pp.1-25. ⟨10.5802/crchim.271⟩

Article dans une revue hal-04740350v1
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Seasonal dynamics of a glycan‐degrading flavobacterial genus in a tidally mixed coastal temperate habitat

Maéva Brunet , Nolwen Le Duff , Fabienne Rigaut-Jalabert , Sarah Romac , Tristan Barbeyron et al.

Environmental Microbiology, 2023, 25 (12), pp.3192-3206. ⟨10.1111/1462-2920.16505⟩

Article dans une revue hal-04260403v1
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Unique alcohol dehydrogenases involved in algal sugar utilization by marine bacteria

Stefan Brott , Ki Hyun Nam , François Thomas , Theresa Dutschei , Lukas Reisky et al.

Applied Microbiology and Biotechnology, 2023, 107 (7-8), pp.2363-2384. ⟨10.1007/s00253-023-12447-x⟩

Article dans une revue hal-04234624v1
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Zobellia alginiliquefaciens sp. nov., a novel member of the flavobacteria isolated from the epibiota of the brown alga Ericaria zosteroides (C. Agardh) Molinari & Guiry 2020

Tristan Barbeyron , Nolwen Le Duff , Eric Duchaud , François Thomas

International Journal of Systematic and Evolutionary Microbiology, 2023, 73 (6), pp.005924. ⟨10.1099/ijsem.0.005924⟩

Article dans une revue hal-04199452v1
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Connecting Algal Polysaccharide Degradation to Formaldehyde Detoxification

Stefan Brott , François Thomas , Maike Behrens , Karen Methling , Daniel Bartosik et al.

ChemBioChem, 2022, 23 (14), pp.e202200269. ⟨10.1002/cbic.202200269⟩

Article dans une revue hal-03822270v1
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Consuming fresh macroalgae induces specific catabolic pathways, stress reactions and Type IX secretion in marine flavobacterial pioneer degraders

Maéva Brunet , Nolwen Le Duff , Tristan Barbeyron , François Thomas

The International Society of Microbiologial Ecology Journal, 2022, 16, pp.2027 - 2039. ⟨10.1038/s41396-022-01251-6⟩

Article dans une revue hal-03774104v1
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Structure-function analysis of a new PL17 oligoalginate lyase from the marine bacterium Zobellia galactanivorans Dsij T

Diane Jouanneau , Leesa J Klau , Robert Larocque , Agathe Jaffrennou , Ghislain Duval et al.

Glycobiology, 2021, 23 (3), pp.1638-1655. ⟨10.1093/glycob/cwab058⟩

Article dans une revue hal-03357278v1
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Functional Characterization of a L-2-Haloacid Dehalogenase From Zobellia galactanivorans DsijT Suggests a Role in Haloacetic Acid Catabolism and a Wide Distribution in Marine Environments

Eugénie Grigorian , Agnès Groisillier , François Thomas , Catherine Leblanc , Ludovic Delage

Frontiers in Microbiology, 2021, 12, ⟨10.3389/fmicb.2021.725997⟩

Article dans une revue hal-03357342v1
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Isotopic tracing reveals single-cell assimilation of a macroalgal polysaccharide by a few marine Flavobacteria and Gammaproteobacteria

François Thomas , Nolwen Le Duff , Ting-Di Wu , Aurélie Cébron , Stéphane Uroz et al.

The International Society of Microbiologial Ecology Journal, 2021, 15 (10), pp.3062-3075. ⟨10.1038/s41396-021-00987-x⟩

Article dans une revue hal-03220808v1
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Accumulation of detached kelp biomass in a subtidal temperate coastal ecosystem induces succession of epiphytic and sediment bacterial communities

Maéva Brunet , Florian de Bettignies , Nolwen Le Duff , Gwenn Tanguy , Dominique Davoult et al.

Environmental Microbiology, 2021, ⟨10.1111/1462-2920.15389⟩

Article dans une revue hal-03146433v1
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Zobellia roscoffensis sp. nov. and Zobellia nedashkovskayae sp. nov., two flavobacteria from the epiphytic microbiota of the brown alga Ascophyllum nodosum, and emended description of the genus Zobellia

Tristan Barbeyron , Manon Thiébaud , Nolwen Le Duff , Marjolaine Martin , Erwan Corre et al.

International Journal of Systematic and Evolutionary Microbiology, 2021, 71 (8), pp.004913. ⟨10.1099/ijsem.0.004913⟩

Article dans une revue hal-03357314v1
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Specific detection and quantification of the marine flavobacterial genus Zobellia on macroalgae using novel qPCR and CARD-FISH assays

Maéva Brunet , Nolwen Le Duff , Bernhard M Fuchs , Rudolf Amann , Tristan Barbeyron et al.

Systematic and Applied Microbiology, 2021, 44 (6), pp.126269. ⟨10.1016/j.syapm.2021.126269⟩

Article dans une revue hal-03417302v1
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Regulation of alginate catabolism involves a GntR family repressor in the marine flavobacterium Zobellia galactanivorans DsijT

Magda Dudek , Anissa Dieudonné , Diane Jouanneau , Tatiana Rochat , Gurvan Michel et al.

Nucleic Acids Research, 2020, 48 (14), pp.7786-7800. ⟨10.1093/nar/gkaa533⟩

Article dans une revue hal-02938399v1
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Degradation dynamics and processes associated with the accumulation of Laminaria hyperborea (Phaeophyceae) kelp fragments: an in situ experimental approach

Florian de Bettignies , Patrick Dauby , François Thomas , Angélique Gobet , Ludovic Delage et al.

Journal of Phycology, 2020, 56 (6), pp.1481-1492. ⟨10.1111/jpy.13041⟩

Article dans une revue hal-03035135v1
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Short-term effect of simulated salt marsh restoration by sand-amendment on sediment bacterial communities

François Thomas , James T. Morris , Cathleen Wigand , Stefan M. Sievert

PLoS ONE, 2019, 14 (4), pp.e0215767. ⟨10.1371/journal.pone.0215767⟩

Article dans une revue hal-02147188v1
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Evaluation of a new primer combination to minimize plastid contamination in 16S rDNA metabarcoding analyses of alga‐associated bacterial communities

François Thomas , Simon Dittami , Maéva Brunet , Nolwen Le Duff , Gwenn Tanguy et al.

Environmental Microbiology Reports, 2019, 12 (1), pp.30-37. ⟨10.1111/1758-2229.12806⟩

Article dans une revue hal-02404303v1
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Stable isotope probing and metagenomics highlight the effect of plants on uncultured phenanthrene-degrading bacterial consortium in polluted soil

François Thomas , Erwan Corre , Aurélie Cebron

The International Society of Microbiologial Ecology Journal, 2019, 13 (7), pp.1814-1830. ⟨10.1038/s41396-019-0394-z⟩

Article dans une revue hal-02322773v1
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Primary productivity below the seafloor at deep-sea hot springs

Jesse Mcnichol , Hryhoriy Stryhanyuk , Sean Sylva , François Thomas , Niculina Musat et al.

Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (26), pp.6756-6761. ⟨10.1073/pnas.1804351115⟩

Article dans une revue hal-02322725v1
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How do deep-sea hot spring ecosystems work?

Stefan Sievert , Jesse Mcnichol , François Thomas

Science Journal for Kids, 2018, pp.1-5

Article dans une revue hal-02404329v1
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Gene Expression Analysis of Zobellia galactanivorans during the Degradation of Algal Polysaccharides Reveals both Substrate-Specific and Shared Transcriptome-Wide Responses

François Thomas , Philippe Bordron , Damien Eveillard , Gurvan Michel

Frontiers in Microbiology, 2017, 8, pp.article 1808. ⟨10.3389/fmicb.2017.01808⟩

Article dans une revue hal-01613034v1
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Rhizosphere effect is stronger than PAH concentration on shaping spatial bacterial assemblages along centimetre-scale depth gradients

Amélia Bourceret , Corinne Leyval , François Thomas , Aurélie Cebron

Canadian Journal of Microbiology, 2017, 63 (11), pp.881 - 893. ⟨10.1139/cjm-2017-0124⟩

Article dans une revue hal-01930946v1
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Carrageenan catabolism is encoded by a complex regulon in marine heterotrophic bacteria

Elizabeth Ficko-Blean , Aurelie Prechoux , François Thomas , Tatiana Rochat , Robert Larocque et al.

Nature Communications, 2017, 8, pp.1685. ⟨10.1038/s41467-017-01832-6⟩

Article dans une revue hal-01899178v1
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Genetic analyses unravel the crucial role of a horizontally acquired alginate lyase for brown algal biomass degradation by Z obellia galactanivorans

Yongtao Zhu , François Thomas , Robert Larocque , Nan Li , Delphine Duffieux et al.

Environmental Microbiology, 2017, ⟨10.1111/1462-2920.13699⟩

Article dans une revue hal-01503166v1
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Herbivore-induced chemical and molecular responses of the kelps Laminaria digitata and Lessonia spicata

Andrés A Ritter , Léa Cabioch , Loraine A Brillet-Guéguen , Erwan A Corre , Audrey A Cosse et al.

PLoS ONE, 2017, 12 (3), pp.e0173315. ⟨10.1371/journal.pone.0173315.s011⟩

Article dans une revue hal-01587420v1
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Habitat and taxon as driving forces of carbohydrate catabolism in marine heterotrophic bacteria: example of the model algae-associated bacterium Zobellia galactanivorans Dsij T

Tristan Barbeyron , François Thomas , Valérie Barbe , Hanno Teeling , Chantal Schenowitz et al.

Environmental Microbiology, 2016, Ecology and Physiology of Marine Microbes, 18 (12), pp.4610-4627. ⟨10.1111/1462-2920.13584⟩

Article dans une revue hal-02137896v1
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Short-Term Rhizosphere Effect on Available Carbon Sources, Phenanthrene Degradation, and Active Microbiome in an Aged-Contaminated Industrial Soil

François Thomas , Aurélie Cebron

Frontiers in Microbiology, 2016, 7, pp.92. ⟨10.3389/fmicb.2016.00092⟩

Article dans une revue hal-01780413v1

Isolation and substrate screening of polycyclic aromatic hydrocarbon degrading bacteria from soil with long history of contamination

François Thomas , Catherine Lorgeoux , Pierre Faure , David Billet , Aurélie Cebron

International Biodeterioration and Biodegradation, 2016, 107, pp.1 - 9. ⟨10.1016/j.ibiod.2015.11.004⟩

Article dans une revue istex hal-01780009v1

Kelps feature systemic defense responses: insights into the evolution of innate immunity in multicellular eukaryotes.

François Thomas , Audrey Cosse , Sophie Le Panse , Bernard Kloareg , Philippe Potin et al.

New Phytologist, 2014, 204 (3), pp.567-76

Article dans une revue hal-01113853v1
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Rhizosphere heterogeneity shapes abundance and activity of sulfur-oxidizing bacteria in vegetated salt marsh sediments

François Thomas , Anne Giblin , Zoe Cardon , Stefan Sievert

Frontiers in Microbiology, 2014, 5, pp.309. ⟨10.3389/fmicb.2014.00309⟩

Article dans une revue hal-01777382v1
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Comparative characterization of two marine alginate lyases from Zobellia galactanivorans reveals distinct modes of action and exquisite adaptation to their natural substrate.

François Thomas , Lena C E Lundqvist , Murielle Jam , Alexandra Jeudy , Tristan Barbeyron et al.

Journal of Biological Chemistry, 2013, 288 (32), pp.23021-37. ⟨10.1074/jbc.M113.467217⟩

Article dans une revue hal-00998611v1

Biochemical and Structural Characterization of the Complex Agarolytic Enzyme System from the Marine Bacterium Zobellia galactanivorans

Jan-Hendrik Hehemann , Gaëlle Correc , François Thomas , Thomas Thomas , Tristan Barbeyron et al.

Journal of Biological Chemistry, 2012, 287 (36), pp.30571-30584. ⟨10.1074/jbc.M112.377184⟩

Article dans une revue hal-02108464v1
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Waterborne signaling primes the expression of elicitor-induced genes and buffers the oxidative responses in the brown alga Laminaria digitata.

François Thomas , Audrey Cosse , Sophie Goulitquer , Stefan Raimund , Pascal Morin et al.

PLoS ONE, 2011, 6 (6), pp.e21475. ⟨10.1371/journal.pone.0021475⟩

Article dans une revue hal-00925488v1
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Environmental and gut bacteroidetes: the food connection

François Thomas , Jan-Hendrik Hehemann , Etienne Rebuffet , Mirjam Czjzek , Gurvan Michel

Frontiers in Microbiology, 2011, 2, pp.93. ⟨10.3389/fmicb.2011.00093⟩

Article dans une revue hal-00925466v1