Gabriel KROUK

140
Documents

Publications

Publications

From architectural to functional high throughput root phenotyping: towards new breeding tools

Christophe Salon , Raffaella Balestrini , Bastien Billot , Francesca Degan , Pierre Dubreuil et al.

Joint international conference, crop/plant modeling, big data and applications, Nov 2025, Nanchang, China

Communication dans un congrès hal-05481946v1
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Examples of machine learning to advance (plant) biology

Gabriel Krouk

PLant science in the ANThropocene - PLANT, Mar 2025, Saclay, France

Communication dans un congrès hal-05022974v1

Plenary Keynote: Machine learning, artificial intelligence used for plant biology and beyond

Gabriel Krouk

SAFA Doctoral Annual Meeting, Sep 2024, Castellania, Italy

Communication dans un congrès hal-04877727v1

Generative AI to Design new Peptides to control protein function

Gabriel Krouk

5. Next-Generation Synthetic Biology (NGSB24), Dec 2024, Ghent, Belgium

Communication dans un congrès hal-04877737v1

Nitrogen Signaling Interactions and a New Kind of GWAS

Gabriel Krouk

1. PlantACT! Conference, Mar 2024, Düsseldorf, Germany

Communication dans un congrès hal-04877716v1

Next-Gen GWAS to Explore Epistatic Architecture of Nutrient Content in Plants and Our Path Towards Human Trait Studies

Gabriel Krouk

SEB Conference Prague 2024, Jul 2024, Prague, Czech Republic

Communication dans un congrès hal-04877709v1
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Unraveling nitrogen-iron-sulfur interaction to improve ammonium use efficiency in monocots

L Urmeneta Garín , Javier Canales , Gabriel Krouk , M.B. Gonzalez-Moro , Daniel Marino

17. Plant Molecular Biology Meeting (RBMP 2024), Jul 2024, Castellon de la Plana, Spain

Communication dans un congrès hal-05084633v1

Comment l’intelligence artificielle générative revisite nos questions ? : Quelles applications dans nos domaines ?

Gabriel Krouk

Journees scientifiques BAP 2024, INRAE, Sep 2024, Verneuil-sur-Avre, France

Communication dans un congrès hal-04737855v1

Systems biology of nutrient use" dans la Session 2: Nitrogen Use Efficiency: Enhancing Plant Nitrogen Use and Avoiding Nitrogenous Emissions

Gabriel Krouk

1. PlantACT! Conference, Mar 2024, Düsseldorf, Germany

Communication dans un congrès hal-04739803v1

A hydro-reporter to unravel the early phases of water deficit in plants

Yann Boursiac , Amandine Crabos , Yunji Huang , Thomas Boursat , Christophe Maurel et al.

MIFOBIO meeting (Microscopy for Functional Biology), Nov 2023, Presqu'île de Giens, France

Communication dans un congrès hal-04460176v1

Within a high throughput phenotyping platform, mix ecophysiology, microbial ecology, molecular physiology and genetics and stir: the recipe of new breeding tools

Christophe Salon , Mustapha Arkoun , Florian Frugier , Bastien Billot , Manuel Blouin et al.

3. Asia-Pacific Plant Phenomics International Conference, Jul 2023, Sanya, China

Communication dans un congrès hal-04205984v1

New developments towards high throughput phenotyping studies devoted to innovative plant breeding tools

Christophe Salon , Arkoum, Mustapha , Bastien Billot , Pierre Dubreuil , Florian Frugier et al.

3. Colloque de la North East Agricultural University. International Forum of Intelligent Agriculture, Jan 2023, Online, China

Communication dans un congrès hal-03994719v1

Modeling water transport and perceiving water deficit

Yann Boursiac , Amandine Crabos , Yunji Huang , Thomas Boursat , Christophe Maurel et al.

3. INUPRAG Symposium on Integrative Plant Biology, Feb 2023, Umeå, Sweden

Communication dans un congrès hal-04460135v1

From morphological to functional root traits assessment with high throughpout phenotyping

Christophe Salon , Marion Prudent , Mustapha Arkoun , Florian Frugier , Bastien Billot et al.

International Symposium “Frontiers in the development and application of plant phenotyping: What are we seeking in plant phenotyping?, Oct 2023, Tokyo, Japan

Communication dans un congrès hal-04224465v1
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Nutritional interactions in plants (N x P) and new type of GWAS providing full epistatic maps with a gene resolution

Arthur Poitout , Gabriel Krouk , Benoit Lacombe , Sandrine Ruffel

33. International Conference on Arabidopsis Research ICAR2023, Jun 2023, Chiba, Japan

Communication dans un congrès hal-04744045v1

A systems view of nitrogen signaling interactions

Gabriel Krouk

SEB Annual Conference 2022, Jul 2022, Montpellier, France

Communication dans un congrès hal-04902268v1

Nitrogen Signaling interactions in plants

Gabriel Krouk

Novel approaches and technologies for actual and future challenges in agricultural chemistry, Feb 2022, Udine, Italy

Communication dans un congrès hal-04902160v1

Early perception of water deficit in roots

Yann Boursiac , Amandine Crabos , Huang Yunji , Christophe Maurel , Sandrine Ruffel et al.

Réunion GDR Phyp, Mar 2022, Carry-Le-Rouet, France

Communication dans un congrès hal-04164260v1

Modeling and Gene Regulatory Networks

Gabriel Krouk

Spatial and Temporal Dynamics in Plant Biology, Gordon Research Conference, Jun 2022, Holderness, United States

Communication dans un congrès hal-04902214v1

Les défis méthodologiques du phénotypage Haut Débit - Expectations of plant high throughput phenotyping and associated tools and methods

Christophe Salon , Arkoum, Mustapha , Bastien Billiot , Virginie Bourion , Pierre Dubreuil et al.

Prospectives de l’INEE, Institut Ecologie et environnement du CNRS, Oct 2022, La Rochelle, France

Communication dans un congrès hal-03994582v1
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Regulatory Network behind Systemic Nitrogen Signaling in Arabidopsis

Arthur Poitout , Gabriel Krouk , Benoit Lacombe , Sandrine Ruffel

31. International Conference on Arabidopsis Research ICAR 2021, The North American Arabidopsis Steering Committee (NAASC), Jun 2021, Online, United States

Communication dans un congrès hal-04749683v1
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Root ubiquitinome under osmotic stress

Nathalie Berger , Vincent Demolombe , Sonia Hem , Valérie Rofidal , Laura Steinmann et al.

INRAE / Protéomevert, INRAE; Visioconférence, Jun 2021, Online, France

Communication dans un congrès hal-04178068v1

Root ubiquitinome under osmotic stress

Nathalie Berger , Vincent Demolombe , Sonia Hem , Valérie Rofidal , Laura Steinmann et al.

INPPO International Plant Proteomics Organization, Visioconférence, Mar 2021, Online, France

Communication dans un congrès hal-04178284v1

Determinisms of plant and microbiome interactions : a multidisciplinary approach involving high-throughput phenotyping

Christophe Salon , Arkoum, Mustapha , Bastien Billot , Manuel Blouin , Virginie Bourion et al.

North East Agricultural University lectures, China, Nov 2021, Online, China

Communication dans un congrès hal-03585274v1

Phenotyping, ecophysiology and molecular physiology to characterize plant root system architecture and plant-plant and plant-microorganisms interactions

Christophe Salon , Virginie Bourion , Pierre Dubreuil , Christian Jeudy , Gabriel Krouk et al.

EPPN 2021 European Plant Phenotyping Network, May 2021, Vituel, France

Communication dans un congrès hal-03299527v1

Going back to roots: combining phenotyping, ecophysiology and molecular physiology

Christophe Salon , Virginie Bourion , Pierre Dubreuil , Christian Jeudy , Gabriel Krouk et al.

“European Legumes in Transition” Webinar-Series of the projects LEGVALUE and TRUE for Decisionmakers and Stakeholders, May 2021, virtuel, France

Communication dans un congrès hal-03299623v1

A systems approach to plant signaling interactions

Gabriel Krouk

Plant Science for Climate Emergency, VIB Conference, Jun 2021, Online, Belgium

Communication dans un congrès hal-04902229v1

Looking back to roots: phenotyping facilities and applications. Web broadcast conference

Christophe Salon , Virginie Bourion , V. Declerck , Pierre Dubreuil , Christian Jeudy et al.

Web broadcast conference (> 5000 auditeurs), Apr 2020, Virtuel, France

Communication dans un congrès hal-03610388v1

High-throughput phenotyping : characterizing physiological and genetic determinants of key traits of the root system

Christophe Salon , Virginie Bourion , Pierre Dubreuil , Christian Jeudy , Gabriel G. Krouk et al.

JST The Second International Workshop on Field Phenotyping and Modeling for Cultivation, Dec 2020, Dijon, France

Communication dans un congrès hal-03099212v1

Regulatory Network behind Systemic Nitrogen Signaling, in Arabidopsis

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák , Gabriel Krouk et al.

International Workshop on organic nitrogen and plant nutrition (OrgN2020), Jan 2020, Ascona, Switzerland

Communication dans un congrès hal-02961496v1

High-throughput phenotyping of key legumes (and others) root traits

Christophe Salon , Virginie Bourion , Pierre Dubreuil , Christian Jeudy , Gabriel G. Krouk et al.

Conférence of the College of Agriculture, Northeast Agricultural University, Xiangfang district, Harbin, Heilongjiang Province, P.R.China, Nov 2020, Heilongjiang Province, China

Communication dans un congrès hal-03101989v1

Interaction between systemic nitrogen signaling and hormones, in Arabidopsis

Sandrine Ruffel , Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák et al.

23. International conference on plant growth substances IPGSA 2019, Jun 2019, Paris, France

Communication dans un congrès hal-02951000v1

Following Turgor Pressure in Plant Cells

Yann Boursiac , Didier Felbacq , Ana Maria Velez-Cardona , Amandine Crabos , Gabriel Krouk et al.

Workshop on Turgor Pressure, GDR PhyP - Biophysique et biomécanique des plantes, Oct 2018, Montpellier, France

Communication dans un congrès hal-02935092v1

Interaction between systemic nitrogen signaling and hormones, in arabidopsis

Sandrine Ruffel , Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák et al.

12th Congress of the International Plant Molecular Biology, Aug 2018, Montpellier, France

Communication dans un congrès hal-01868810v1

Gene Regulatory Network Dynamics: Lessons from Plants

Gabriel Krouk

Gordon Research Conference :Plant Molecular Biology "Dynamic Plant Systems", Jun 2018, Holderness, United States

Communication dans un congrès hal-01843736v1

Regulatory Network behind Systemic Nitrogen Signaling, in Arabidopsis

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák , Gabriel Krouk et al.

The Coordination of Development, Sep 2018, Cambridge, United Kingdom

Communication dans un congrès hal-02961538v1

A Systems View of Nitrogen Signaling Interactions

Gabriel Krouk

International Workshop on Plant Nutritional Responses, Dec 2019, Nagoya, Japan

Communication dans un congrès hal-04902245v1

A Systems View of Nitrogen Signaling Interactions

Gabriel Krouk

The Keystone Symposia: Plant Signaling, Molecular Pathways and Network Integration, Jan 2018, Tahoe City, United States

Communication dans un congrès hal-01848569v1

Deciphering Cytokinin-Dependent Shoot Regulatory Network Controlling Root Response to Nitrate Heterogeneity

Arthur Poitout , Gabriel Krouk , Benoît Lacombe , Sandrine Ruffel

3. International Conference Plant Nutrition, Growth & Environment Interactions, Feb 2017, Vienne, Austria

Communication dans un congrès hal-02961593v1

Nitrogen-related systemic signaling controlling root response to heterogeneous nitrate availability, in Arabidopsis

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák , Gabriel Krouk et al.

IGER International Symposium on Long-Distance signaling in Plants, Nov 2017, Nagoya, Japan

Communication dans un congrès hal-02961553v1

Gene Regulatory Networks: Lessons from plants

Gabriel Krouk

Systems Biology Conference (LyonSysBio), Nov 2017, Villeurbanne, France

Communication dans un congrès hal-01840943v1

Réseaux de régulation génique : que nous apprennent les plantes ?

Gabriel Krouk

Les journées NETBIO, Nov 2017, Toulouse, France

Communication dans un congrès hal-01840953v1

The Arabidopsis nitrate transceptor NRT1.1 NPF6.3 that governs distinct pathways is subjected to a complex post transcriptional regulation

Eléonore Bouguyon , Marjorie Pervent , Francine Perrine-Walker , Juliette Rochette , Gabriel Krouk et al.

International Congress "Nitrogen 2016" EMBO Conference, Aug 2016, Montpellier, France

Communication dans un congrès hal-01392869v1

Nitrate drives the phosphate starvation response through IDR1

Anna Medici , Wojciech Szponarski , Pierre Dangeville , Benoît Lacombe , Hatem Rouached et al.

International Congress "Nitrogen 2016" EMBO Conference: The Nitrogen Nutrition of Plant, EMBO. DEU., Aug 2016, Montpellier, France

Communication dans un congrès hal-01383561v1

A systems view of nitrogen signaling interactions

Gabriel Krouk

International Congress "Nitrogen 2016" EMBO Conference: The Nitrogen Nutrition of Plant, Aug 2016, Montpellier, France

Communication dans un congrès hal-01384419v1

New dimensions in the systems biology of nitrogen networks: time, dosage and nutrient interactions

Joan Doidy , Kranthi Varala , Amy Marshall-Colón , Alessia Para , Jacopo Cirrone et al.

Nitrogen 2016, the Nitrogen nutrition of plants, Aug 2016, Montpellier (34000), France

Communication dans un congrès hal-05462673v1

The Arabidopsis nitrate transceptor NRT1.1 governs distinct signaling pathways and controls root colonization via local modification of auxin fluxes

Eléonore Bouguyon , Marjorie Pervent , Francine Perrine-Walker , Gabriel Krouk , Emmanuelle Mounier et al.

24th International Conference on Arabidopsis Research, Jun 2013, Sydney, Australia

Communication dans un congrès hal-01601305v1

Systems approach to decipher transcriptional networks controlling nitrogen and hormones signaling interactions

Gabriel Krouk

Plant Growth, Nutrition and Environment interactions, Feb 2012, Vienna, Austria

Communication dans un congrès hal-02803790v1

The Arabidopsis NRT1.1 transporter acts as a nitrate sensor and governs root colonization via modification of local auxin concentration

Eléonore Bouguyon , Francine Manuella Perrine Walker , Gabriel Krouk , Emmanuelle Mounier , Marjorie Pervent et al.

4th UPSC-INRA (UPRA) Meeting 2012, Mar 2012, Umeå, Sweden

Communication dans un congrès hal-02803875v1

Systems approach to decipher transcriptional networks controlling nitrogen and hormones signaling interactions

Gabriel Krouk

Nutrient Sensing and uptake, 2010, San Diego, United States

Communication dans un congrès hal-02812124v1

Nitrogen signalling from and to nitrate transporters in Arabidopsis

Alain Gojon , Gabriel Krouk , Thomas Girin , Francine Manuella Perrine Walker , Saied El Khafafi et al.

"Nitrogen 2010" 1st International Symposium on the Nitrogen Nutrition of Plants, Jul 2010, Aichi, Japan

Communication dans un congrès hal-02814889v1
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Nitrate Sensing and Signaling in Plants: Comparative Insights and Nutritional Interactions

Sandrine Ruffel , Jorge del Rosario , Benoît Lacombe , Hatem Rouached , Rodrigo A Gutiérrez et al.

Annual Review of Plant Biology, 2025, 76 (1), pp.25-52. ⟨10.1146/annurev-arplant-083123-053039⟩

Article dans une revue hal-05076570v1
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Nitrogen sensing and regulatory networks: It’s about time and space

Carly M Shanks , Karin Rothkegel , Matthew D Brooks , Chia-Yi Cheng , José M Alvarez et al.

The Plant cell, 2024, 36 (5), pp.1482-1503. ⟨10.1093/plcell/koae038⟩

Article dans une revue hal-04479330v1
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Next-Gen GWAS: full 2D epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

Clément Carré , Jean-Baptiste Carluer , Christian Chaux , Chad Estoup-Streiff , Nicolas Roche et al.

Genome Biology, 2024, 25 (1), pp.76. ⟨10.1186/s13059-024-03202-0⟩

Article dans une revue hal-04532636v1
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Recent advances in unraveling the mystery of combined nutrient stress in plants

Megan Deloose , Joaquin Clúa , Huikyong Cho , Luqing Zheng , Khaled Masmoudi et al.

The Plant Journal, 2024, 117 (6), pp.1764-1780. ⟨10.1111/tpj.16511⟩

Article dans une revue hal-04271704v1
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Distinct early transcriptional regulations by turgor and osmotic potential in the root of Arabidopsis

Amandine Crabos , Yunji Huang , Thomas Boursat , Christophe Maurel , Sandrine Ruffel et al.

Journal of Experimental Botany, 2023, 74 (18), pp.5917-5930. ⟨10.1093/jxb/erad307⟩

Article dans une revue hal-04193805v1
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Reduction in PLANT DEFENSIN 1 expression in Arabidopsis thaliana results in increased resistance to pathogens and zinc toxicity

Nga N T Nguyen , Olivier Lamotte , Mohanad Alsulaiman , Sandrine Ruffel , Gabriel Krouk et al.

Journal of Experimental Botany, 2023, 74 (17), pp.5374-5393. ⟨10.1093/jxb/erad228⟩

Article dans une revue hal-04133593v2
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Unleashing the potential of peptides in agriculture and beyond

Gabriel Krouk , Wojciech Szponarski , Sandrine Ruffel

Trends in Plant Science, 2023, 28 (7), pp.734-736. ⟨10.1016/j.tplants.2023.03.025⟩

Article dans une revue hal-04089178v1

ARSK1 activates TORC1 signaling to adjust growth to phosphate availability in Arabidopsis

Huikyong Cho , Michael Banf , Zaigham Shahzad , Jelle van Leene , Flavia Bossi et al.

Current Biology, 2023, 33 (9), pp.1778-1786.e5. ⟨10.1016/j.cub.2023.03.005⟩

Article dans une revue hal-04044845v1
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PDX1.1-dependent biosynthesis of vitamin B6 protects roots from ammonium-induced oxidative stress

Ying Liu , Rodolfo A Maniero , Ricardo F.H. Giehl , Michael Melzer , Priscille Steensma et al.

Molecular Plant, 2022, 15 (5), pp.820-839. ⟨10.1016/j.molp.2022.01.012⟩

Article dans une revue hal-03540746v1
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Root Membrane Ubiquitinome under Short-Term Osmotic Stress

Nathalie Berger , Vincent Demolombe , Sonia Hem , Valérie Rofidal , Laura Steinmann et al.

International Journal of Molecular Sciences, 2022, 23 (4), pp.1956. ⟨10.3390/ijms23041956⟩

Article dans une revue hal-03593587v1

Two nitrate sensors, how many more?

Jordan Courrèges-Clercq , Gabriel Krouk

Nature Plants, 2022, 8 (11), pp.1212-1213. ⟨10.1038/s41477-022-01276-x⟩

Article dans une revue hal-03844368v1
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GARP transcription factors repress Arabidopsis nitrogen starvation response via ROS-dependent and -independent pathways

Alaeddine Safi , Anna Medici , Wojciech Szponarski , Florence Martin , Anne Clément-Vidal et al.

Journal of Experimental Botany, 2021, 72 (10), pp.3881-3901. ⟨10.1093/jxb/erab114⟩

Article dans une revue hal-03217940v1
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Nitrate signaling promotes plant growth by upregulating gibberellin biosynthesis and destabilization of DELLA proteins

Lucie Camut , Barbora Gallova , Lucas Jilli , Mathilde Sirlin-Josserand , Esther Carrera et al.

Current Biology, 2021, 31 (22), pp.4971-4982.e4. ⟨10.1016/j.cub.2021.09.024⟩

Article dans une revue hal-03840102v1
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The Arabidopsis NRT1.1 transceptor coordinately controls auxin biosynthesis and transport to regulate root branching in response to nitrate

Amel Maghiaoui , Eléonore Bouguyon , Candela Cuesta , Francine Perrine-Walker , Carine Alcon et al.

Journal of Experimental Botany, 2020, 71 (15), pp.4480-4494. ⟨10.1093/jxb/eraa242/5840670⟩

Article dans une revue hal-02619371v1
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Nitrogen and Phosphorus interactions in plants: from agronomic to physiological and molecular insights

Gabriel Krouk , Takatoshi Kiba

Current Opinion in Plant Biology, 2020, 57, pp.104-109. ⟨10.1016/j.pbi.2020.07.002⟩

Article dans une revue hal-02933543v1
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Current status of the multinational Arabidopsis community

Keith Adams , Wagner Araújo , Sebastien Aubourg , Sacha Baginsky , Erica Bakker et al.

Plant Direct, 2020, 4 (7), pp.e00248. ⟨10.1002/pld3.248⟩

Article dans une revue hal-02927028v1
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Nitrate in 2020: Thirty Years from Transport to Signaling Networks

Elena A. Vidal , José M Alvarez , Viviana Araus , Eleodoro Riveras , Matthew Brooks et al.

The Plant cell, 2020, 32 (7), pp.2094-2119. ⟨10.1105/tpc.19.00748⟩

Article dans une revue hal-02894020v1
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Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade

José M. Alvarez , Anna-Lena Schinke , Matthew D. Brooks , Angelo Pasquino , Lauriebeth Leonelli et al.

Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-14979-6⟩

Article dans une revue hal-02507235v1
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The Chromatin Factor HNI9 and ELONGATED HYPOCOTYL5 Maintain ROS Homeostasis under High Nitrogen Provision

Fanny Bellegarde , Amel Maghiaoui , Jossia Boucherez , Gabriel Krouk , Laurence Lejay et al.

Plant Physiology, 2019, 180 (1), pp.582-592. ⟨10.1104/pp.18.01473⟩

Article dans une revue hal-02139390v1
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iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community

Pascal Falter-Braun , Siobhan Brady , Rodrigo Gutiérrez , Gloria Coruzzi , Gabriel Krouk

Molecular Plant, 2019, 12 (6), pp.727-730. ⟨10.1016/j.molp.2019.05.005⟩

Article dans une revue hal-02139469v1
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Identification of molecular integrators shows that nitrogen actively controls the phosphate starvation response in plants

Anna Medici , Wojciech Szponarski , Pierre Dangeville , Alaeddine Safi , Indeewari Madhubhashini Dissanayake et al.

The Plant cell, 2019, 31 (5), pp.1171-1184. ⟨10.1105/tpc.18.00656⟩

Article dans une revue hal-02107616v1
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Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions

Matthew D Brooks , Jacopo Cirrone , Angelo V Pasquino , José M Alvarez , Joseph Swift et al.

Nature Communications, 2019, 10, pp.1569. ⟨10.1038/s41467-019-09522-1⟩

Article dans une revue hal-02122905v1
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Getting to the Root of Plant Mineral Nutrition: Combinatorial Nutrient Stresses Reveal Emergent Properties

Nadia Bouain , Gabriel Krouk , Benoît Lacombe , Hatem Rouached

Trends in Plant Science, 2019, 24 (6), pp.542-552. ⟨10.1016/j.tplants.2019.03.008⟩

Article dans une revue hal-02139410v1
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LPCAT1 controls phosphate homeostasis in a zinc-dependent manner.

Mushtak Kisko , Nadia Bouain , Alaeddine Safi , Anna Medici , Robert C Akkers et al.

eLife, 2018, 7, ⟨10.7554/eLife.32077⟩

Article dans une revue hal-01716614v1
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Responses to Systemic Nitrogen Signaling in Arabidopsis Roots Involve trans-Zeatin in Shoots

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondřej Novák , Gabriel Krouk et al.

The Plant cell, 2018, 30 (6), pp.1243-1257. ⟨10.1105/tpc.18.00011⟩

Article dans une revue hal-01777537v1
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TransDetect identifies a new regulatory module controlling phosphate accumulation.

Sikander Pal , Mushtak Kisko , Christian Dubos , Benoît Lacombe , Pierre Berthomieu et al.

Plant Physiology, 2017, 175 (2), ⟨10.1104/pp.17.00568⟩

Article dans une revue hal-01578849v1
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Reverse engineering highlights potential principles of large gene regulatory network design and learning.

Clement Carre , André Mas , Gabriel Krouk

npj Systems Biology and Applications, 2017, 3, pp.17. ⟨10.1038/s41540-017-0019-y⟩

Article dans une revue hal-01573563v1

The world according to GARP transcription factors.

Alaeddine Safi , Anna Medici , Wojciech Szponarski , Sandrine Ruffel , Benoît Lacombe et al.

Current Opinion in Plant Biology, 2017, 39, pp.159-167. ⟨10.1016/j.pbi.2017.07.006⟩

Article dans une revue hal-01595209v1

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

Joanna Friesner , Sarah M Assmann , Ruth Bastow , Julia Bailey-Serres , Jim Beynon et al.

Plant Physiology, 2017, 175 (4), pp.1499-1509. ⟨10.1104/pp.17.01490⟩

Article dans une revue hal-01769299v1

Nitrate signalling: Calcium bridges the nitrate gap.

Gabriel Krouk

Nature Plants, 2017, 3, pp.17095. ⟨10.1038/nplants.2017.95⟩

Article dans une revue hal-01594831v1

Nitrate Controls Root Development through Post-Transcriptional Regulation of the NRT1.1/NPF6.3 transporter/sensor.

Eléonore Bouguyon , Francine Perrine-Walker , Marjorie Pervent , Juliette Rochette , Candela Cuesta et al.

Plant Physiology, 2016, 172 (2), ⟨10.1104/pp.16.01047⟩

Article dans une revue hal-01360480v1
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Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics

Jorge Bellati , Chloé Champeyroux , Sonia Hem , Valerie Rofidal , Gabriel Krouk et al.

Molecular and Cellular Proteomics, 2016, 15 (11), mcp.M116.060087. ⟨10.1074/mcp.M116.060087⟩

Article dans une revue hal-01382938v1
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Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root

Daniela Ristova , Clement Carre , Marjorie Pervent , Anna Medici , Grace Jaeyoon Kim et al.

Science Signaling, 2016, 9 (451), pp.rs13. ⟨10.1126/scisignal.aaf2768⟩

Article dans une revue hal-01595027v1

Long-distance nitrate signaling displays cytokinin dependent and independent branches.

Sandrine Ruffel , Arthur Poitout , Gabriel Krouk , Gloria M Coruzzi , Benoît Lacombe

Journal of Integrative Plant Biology, 2016, 58 (3), pp.226-9. ⟨10.1111/jipb.12453⟩

Article dans une revue hal-01321526v1
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Nitrate transport, sensing and responses in plants

José A. O’brien , Andrea Vega , Eléonore Bouguyon , Gabriel Krouk , Alain Gojon et al.

Molecular Plant, 2016, 9 (6), pp.837-856. ⟨10.1016/j.molp.2016.05.004⟩

Article dans une revue hal-01595480v1

Hormones and nitrate: a two-way connection.

Gabriel Krouk

Plant Molecular Biology, 2016, 91 (6), pp.599-606. ⟨10.1007/s11103-016-0463-x⟩

Article dans une revue hal-01321091v1

GeneCloud Reveals Semantic Enrichment in Lists of Gene Descriptions

Gabriel Krouk , Clément Carré , Cecile Fizames , Alain Gojon , Sandrine Ruffel et al.

Plant Molecular Biology, 2015, 8 (6), pp.971-973. ⟨10.1016/j.molp.2015.02.005⟩

Article dans une revue hal-01180663v1
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Multiple mechanisms of nitrate sensing by Arabidopsis nitrate transceptor NRT1.1

Éléonore Bouguyon , Frédéric Brun , Donaldo Meynard , Martin Kubeš , Marjorie Pervent et al.

Nature Plants, 2015, 1 (3), pp.15015. ⟨10.1038/nplants.2015.15⟩

Article dans une revue hal-01137861v1
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Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis.

Alessia Para , Ying Li , Amy Marshall-Colón , Kranthi Varala , Nancy J Francoeur et al.

Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (28), pp.10371-6. ⟨10.1073/pnas.1404657111⟩

Article dans une revue hal-01053035v1

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip.

Anna Medici , Amy Marshall-Colon , Elsa Ronzier , Wojciech Szponarski , Rongchen Wang et al.

Nature Communications, 2014, 6, pp.6274. ⟨10.1038/ncomms7274⟩

Article dans une revue hal-01141023v1

The primary nitrate response: a multifaceted signalling pathway.

Anna Medici , Gabriel Krouk

Journal of Experimental Botany, 2014, 65 (19), pp.5567-76. ⟨10.1093/jxb/eru245⟩

Article dans une revue hal-01118903v1

Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants.

Ying Li , Gabriel Krouk , Gloria M Coruzzi , Sandrine Ruffel

Journal of Experimental Botany, 2014, 65 (19), pp.5601-10. ⟨10.1093/jxb/eru263⟩

Article dans une revue hal-01118819v1

TARGET: a transient transformation system for genome-wide transcription factor target discovery.

Bastiaan O R Bargmann , Amy Marshall-Colon , Idan Efroni , Sandrine Ruffel , Kenneth D Birnbaum et al.

Molecular Plant, 2013, 6 (3), pp.978-80. ⟨10.1093/mp/sst010⟩

Article dans une revue hal-00860342v1
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A map of cell type-specific auxin responses.

Bastiaan O R Bargmann , Steffen Vanneste , Gabriel Krouk , Tal Nawy , Idan Efroni et al.

Molecular Systems Biology, 2013, 9, pp.688. ⟨10.1038/msb.2013.40⟩

Article dans une revue hal-00873845v1

ABA transport and transporters.

Yann Boursiac , Sophie Léran , Claire Corratgé-Faillie , Alain Gojon , Gabriel Krouk et al.

Trends in Plant Science, 2013, 18 (6), pp.325-33. ⟨10.1016/j.tplants.2013.01.007⟩

Article dans une revue istex hal-00860434v1
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Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.

Elena A Vidal , Tomás C Moyano , Gabriel Krouk , Manpreet S Katari , Milos Tanurdzic et al.

BMC Genomics, 2013, 14 (1), pp.701. ⟨10.1186/1471-2164-14-701⟩

Article dans une revue hal-00921251v1

RootScape: a landmark-based system for rapid screening of root architecture in Arabidopsis.

Daniela Ristova , Ulises Rosas , Gabriel Krouk , Sandrine Ruffel , Kenneth D Birnbaum et al.

Plant Physiology, 2013, 161 (3), pp.1086-96. ⟨10.1104/pp.112.210872⟩

Article dans une revue hal-00967016v1
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Gene regulatory networks in plants: learning causality from time and perturbation.

Gabriel Krouk , Jesse Lingeman , Amy Marshall Colon , Gloria Coruzzi , Dennis Shasha

Genome Biology, 2013, 14 (6), pp.123. ⟨10.1186/gb-2013-14-6-123⟩

Article dans une revue hal-00920683v1
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Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture.

Ulises Rosas , Angelica Cibrian-Jaramillo , Daniela Ristova , Joshua A Banta , Miriam L Gifford et al.

Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (37), pp.15133-8. ⟨10.1073/pnas.1305883110⟩

Article dans une revue hal-00932276v1

Améliorer l'utilisation du nitrate par les plantes

Gabriel Krouk , Alain Gojon

Biofutur, 2012, pp.41

Article dans une revue hal-02642232v1

Iron and ROS control of the DownSTream mRNA decay pathway is essential for plant fitness.

Karl Ravet , Guilhem Reyt , Nicolas Arnaud , Gabriel Krouk , El-Batoul Djouani et al.

EMBO Journal, 2012, 31 (1), pp.175-86. ⟨10.1038/emboj.2011.341⟩

Article dans une revue hal-00777600v1
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A framework integrating plant growth with hormones and nutrients.

Gabriel Krouk , Sandrine Ruffel , Rodrigo A Gutiérrez , Alain Gojon , Nigel M Crawford et al.

Trends in Plant Science, 2011, 16 (4), pp.178-182. ⟨10.1016/j.tplants.2011.02.004⟩

Article dans une revue hal-00586321v1
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HIGH NITROGEN INSENSITIVE 9 (HNI9)-mediated systemic repression of root NO3- uptake is associated with changes in histone methylation.

Thomas Widiez , El Sayed El Kafafi , Thomas Girin , Alexandre Berr , Sandrine Ruffel et al.

Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (32), pp.13329-34. ⟨10.1073/pnas.1017863108⟩

Article dans une revue hal-00623176v1
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Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand

Sandrine Ruffel , Gabriel Krouk , Daniela Ristova , Dennis Shasha , Kenneth D Birnbaum et al.

Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (45), pp.18524-9. ⟨10.1073/pnas.1108684108⟩

Article dans une revue hal-00662610v1

Nitrate transceptor(s) in plants.

Alain Gojon , Gabriel Krouk , Francine Perrine-Walker , Edith Laugier

Journal of Experimental Botany, 2011, 62 (7), pp.2299-308. ⟨10.1093/jxb/erq419⟩

Article dans une revue hal-00589335v1
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[An original ion (nitrate) sensing mechanism: story of the discovery in plants and perspectives].

Gabriel Krouk , Alain Gojon

Médecine/Sciences, 2011, 27 (12), pp.1045-7. ⟨10.1051/medsci/20112712002⟩

Article dans une revue hal-00662211v1

Nitrate-regulated auxin transport by NRT1.1 defines a mechanism for nutrient sensing in plants.

Gabriel Krouk , Benoît Lacombe , Agnieszka Bielach , Francine Perrine-Walker , Katerina Malinska et al.

Developmental Cell, 2010, 18 (6), pp.927-37. ⟨10.1016/j.devcel.2010.05.008⟩

Article dans une revue hal-00508268v1

A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling.

Sandrine Ruffel , Gabriel Krouk , Gloria M Coruzzi

Plant Physiology, 2010, 152 (2), pp.445-52. ⟨10.1104/pp.109.148502⟩

Article dans une revue hal-00457743v1
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Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate.

Gabriel Krouk , Piotr Mirowski , Yann Lecun , Dennis E Shasha , Gloria M Coruzzi

Genome Biology, 2010, 11 (12), pp.R123. ⟨10.1186/gb-2010-11-12-r123⟩

Article dans une revue hal-00553899v1
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Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.

Mariana Obertello , Gabriel Krouk , Manpreet S Katari , Suzan J Runko , Gloria M Coruzzi

BMC Systems Biology, 2010, 4, pp.111. ⟨10.1186/1752-0509-4-111⟩

Article dans une revue hal-00533076v1

Nitrate signaling: adaptation to fluctuating environments.

Gabriel Krouk , Nigel M Crawford , Gloria M Coruzzi , Yi-Fang Tsay

Current Opinion in Plant Biology, 2010, 13 (3), pp.Article in Press. ⟨10.1016/j.pbi.2009.12.003⟩

Article dans une revue istex hal-00462476v1
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A systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in Arabidopsis

Gabriel Krouk , Daniel Tranchina , Laurence Lejay-Lefebvre , Alexis A. Cruikshank , Dennis Shasha et al.

PLoS Computational Biology, 2009, 5 (3), pp.e1000326. ⟨10.1371/journal.pcbi.1000326⟩

Article dans une revue hal-02653785v1

Regulation of the high-affinity NO3- uptake system by NRT1.1-mediated NO3- demand signaling in Arabidopsis.

Gabriel Krouk , Pascal Tillard , Alain Gojon

Plant Physiology, 2006, 142 (3), pp.1075-1086. ⟨10.1104/pp.106.087510⟩

Article dans une revue hal-00124930v1
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Classification and Regression Trees to predict Transcription Factor Combinatorial Interaction in scRNA-seq data

Jean Baptiste Carluer , Laura Steinmann , Clément Carré , André Mas , Gabriel Krouk

2024

Pré-publication, Document de travail hal-04626016v1
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Nitrate-regulated growth processes involve activation of gibberellin pathway

Lucie Camut , Barbora Gallova , Lucas Jilli , Mathilde Sirlin-Josserand , Esther Carrera et al.

2022

Pré-publication, Document de travail hal-03858033v1
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Full epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

Clément Carré , Jean Baptiste Carluer , Christian Chaux , Nicolas Roche , André Mas et al.

2022

Pré-publication, Document de travail hal-03749709v1
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PeTriBERT : Augmenting BERT with tridimensional encoding for inverse protein folding and design

Baldwin Dumortier , Antoine Liutkus , Clément Carré , Gabriel Krouk

2022

Pré-publication, Document de travail hal-03759515v1
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Root membrane ubiquitinome under short-term osmotic stress

Nathalie Berger , Vincent Demolombe , Sonia Hem , Valérie Rofidal , Laura Steinmann et al.

2021

Pré-publication, Document de travail hal-03474600v1
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Revisiting the functional properties of NPF6.3/NRT1.1/CHL1 in xenopus oocytes

Mélanie Noguero , Sophie Léran , Éléonore Bouguyon , Chantal Brachet , Pascal Tillard et al.

2018

Pré-publication, Document de travail (preprint/prepublication) hal-01777543v1
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HRS1/HHOs GARP transcription factors and reactive oxygen species are regulators of Arabidopsis nitrogen starvation response. Affiliation

Alaeddine Safi , Anna Medici , Wojciech Szponarski , Amy Marshall-Colon , Sandrine Ruffel et al.

2018

Pré-publication, Document de travail (preprint/prepublication) hal-01777545v1
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HNI9 and HY5 maintain ROS homeostasis under high nitrogen provision in Arabidopsis

Fanny Bellegarde , Amel Maghiaoui , Jossia Boucherez , Gabriel Krouk , Laurence Lejay et al.

2018

Pré-publication, Document de travail hal-02788343v1

Investigation of transcription factor dynamics by super-resolution microscopy

Jordan Courrèges-Clercq , Eric Hosy , Gabriel Krouk

SEB Conference Prague 2024, Jul 2024, Prague, Czech Republic.

Poster de conférence hal-04877703v1

Investigation of transcription factor dynamics by super-resolution microscopy

Jordan Courrèges-Clercq , Eric Hosy , Gabriel Krouk

Journée Posters IPSiM, May 2023, Montpellier, France

Poster de conférence hal-04877933v1

Strategies of adaptation of the root acquisition system in a heterogeneous nitrate environment in Arabidopsis

Cannelle Armengaud , Xingyu Zheng , Saket Navlakha , Amandine Crabos , Romain Fernandez et al.

Journée Posters IPSiM, May 2023, Montpellier, France

Poster de conférence hal-04877967v1

Investigation of transcription factor dynamics by super-resolution microscopy

Jordan Courrèges-Clercq , Eric Hosy , Gabriel Krouk

Imaging Life : the Future (MRI), Oct 2023, Montpellier, France.

Poster de conférence hal-04877861v1

Shoot molecular mechanisms involved in root responses to nitrate heterogeneity

Virginia Protto , Arthur Poitout , Benoît Lacombe , Gabriel Krouk , Sandrine Ruffel

Journée Posters IPSiM, May 2023, Montpellier, France.

Poster de conférence hal-04877944v1

Silencing of plant defensin type 1 reduces sensitivity to pathogens and zinc toxicity in arabidopsis thaliana

Nga Thi Thuy Nguyen , Olivier Lamotte , Mohanad Alsulaiman , Sandrine Ruffel , Gabriel Krouk et al.

13. International Conference of the French Society of Plant Biology, Aug 2022, Montpellier, France.

Poster de conférence hal-04123213v1

A genetic and molecular approach to identify transcription factors controlling maize root adaptive response to water deficit

Philippe Nacry , Morgan Maillard , Christian Jeudy , Mickael Lamboeuf , M Bellanger et al.

13. International Conference of the French Society of Plant Biology, Aug 2022, Montpellier, France

Poster de conférence hal-04165717v1

A genetic and molecular approach to identify transcription factors controlling maize root adaptive response to water deficit

Phillipe P. Nacry , M. Maillard , Christian Jeudy , Mickael Lamboeuf , M. Bellanger et al.

EMBO Workshop. Molecular responses of plants facing climate change, Jun 2022, Montpellier, France.

Poster de conférence hal-03714586v1

Root membrane ubiquitinome study identifies E2 Ub conjugating enzymes UBC32 and UBC34 that contribute to primary root growth under osmotic stress

Nathalie Berger , Vincent Demolombe - Liozu , Sonia Hem , Valérie Rofidal , Gabriel Krouk et al.

13. International Conference of the French Society of Plant Biology, Aug 2022, Montpellier, France

Poster de conférence hal-04165488v1

Welcome and Opening

Gabriel Krouk

EMBO Workshop on international Plant Systems Biology (iPSB), Apr 2021, Online, Germany.

Poster de conférence hal-04902236v1

Root ubiquitinome under osmotic stress

Nathalie Berger , Vincent Demolombe - Liozu , Sonia Hem , Valérie Rofidal , Laura Steinmann et al.

INPPO International Plant Proteomics, Mar 2021, Online, France.

Poster de conférence hal-04169599v1

A genetic and molecular approach to identify transcription factors controlling maize root adaptive response to water deficit

Phillipe P. Nacry , M. Maillard , Christian Jeudy , Mickael Lamboeuf , M. Bellanger et al.

ISRR11 and ROOTING2021 meeting « Roots never sleep », May 2021, Online, France.

Poster de conférence hal-04169337v1

NPK in Arabidopsis: Revisiting Murashige and Skoog in the Genomic Era

Will E. Hinckley , Viviana Araus , Joan Doidy , Alessia Para , Sophia Shih et al.

12th Lab Plant Genomes, Systems Biology, and Engineering conference, Dec 2021, Cold Spring Harbor (New York), United States.

Poster de conférence hal-05465266v1

Regulation of NRT2s transporter by the NRT1.1 dependent signaling pathway in response to high NO3

Valentin Chaput , Jianfu Li , Pascal Tillard , Tomás C Moyano , Gabriel Krouk et al.

4th International symposium on the Nitrogen Nutrition of Plants, Sep 2019, Nanjing, China

Poster de conférence hal-02947092v1

Interaction between nitrate-related long-distance signaling and hormones, in Arabidopsis

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák , Gabriel Krouk et al.

Plant Signaling: Molecular pathways and network integration, Jan 2018, Tahoe city, United States

Poster de conférence hal-02961622v1
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The TARGET System: Rapid Identification of Direct Targets of Transcription Factors by Gene Regulation in Plant Cells v2

Matthew D. Brooks , Kelsey M. Reed , Gabriel Krouk , Gloria M. Coruzzi , Bastiaan O. R. Bargmann

Qi Song; Zhipeng Tao. Transcription Factor Regulatory Networks, 2594, Humana Press, pp.1-12, 2022, Methods in Molecular Biology, 978-1-0716-2814-0. ⟨10.1007/978-1-0716-2815-7_1⟩

Chapitre d'ouvrage hal-03687926v1

Approche post-génomique du contrôle de l'absorption de l'azote minéral chez Arabidopsis thaliana

Gabriel Krouk

Sciences du Vivant [q-bio]. Ecole Nationale Supérieure Agronomique de Montpellier, 2006. Français. ⟨NNT : ⟩

Thèse tel-02821516v1