Gabriel KROUK

132
Documents

Publications

Publications

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Examples of machine learning to advance (plant) biology

Gabriel Krouk
PLant science in the ANThropocene - PLANT, Mar 2025, Saclay, France
Communication dans un congrès hal-05022974 v1

Generative AI to Design new Peptides to control protein function

Gabriel Krouk
5. Next-Generation Synthetic Biology (NGSB24), Dec 2024, Ghent, Belgium
Communication dans un congrès hal-04877737 v1

Plenary Keynote: Machine learning, artificial intelligence used for plant biology and beyond

Gabriel Krouk
SAFA Doctoral Annual Meeting, Sep 2024, Castellania, Italy
Communication dans un congrès hal-04877727 v1

Nitrogen Signaling Interactions and a New Kind of GWAS

Gabriel Krouk
1. PlantACT! Conference, Mar 2024, Düsseldorf, Germany
Communication dans un congrès hal-04877716 v1

Next-Gen GWAS to Explore Epistatic Architecture of Nutrient Content in Plants and Our Path Towards Human Trait Studies

Gabriel Krouk
SEB Conference Prague 2024, Jul 2024, Prague, Czech Republic
Communication dans un congrès hal-04877709 v1
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Unraveling nitrogen-iron-sulfur interaction to improve ammonium use efficiency in monocots

L Urmeneta Garín , Javier Canales , Gabriel Krouk , M.B. Gonzalez-Moro , Daniel Marino
17. Plant Molecular Biology Meeting (RBMP 2024), Jul 2024, Castellon de la Plana, Spain
Communication dans un congrès hal-05084633 v1

Comment l’intelligence artificielle générative revisite nos questions ? : Quelles applications dans nos domaines ?

Gabriel Krouk
Journees scientifiques BAP 2024, INRAE, Sep 2024, Verneuil-sur-Avre, France
Communication dans un congrès hal-04737855 v1

Systems biology of nutrient use" dans la Session 2: Nitrogen Use Efficiency: Enhancing Plant Nitrogen Use and Avoiding Nitrogenous Emissions

Gabriel Krouk
1. PlantACT! Conference, Mar 2024, Düsseldorf, Germany
Communication dans un congrès hal-04739803 v1

A hydro-reporter to unravel the early phases of water deficit in plants

Yann Boursiac , Amandine Crabos , Yunji Huang , Thomas Boursat , Christophe Maurel et al.
MIFOBIO meeting (Microscopy for Functional Biology), Nov 2023, Presqu'île de Giens, France
Communication dans un congrès hal-04460176 v1

Within a high throughput phenotyping platform, mix ecophysiology, microbial ecology, molecular physiology and genetics and stir: the recipe of new breeding tools

Christophe Salon , Mustapha Arkoun , Florian Frugier , Bastien Billot , Manuel Blouin et al.
3. Asia-Pacific Plant Phenomics International Conference, Jul 2023, Sanya, China
Communication dans un congrès hal-04205984 v1

New developments towards high throughput phenotyping studies devoted to innovative plant breeding tools

Christophe Salon , Arkoum, Mustapha , Bastien Billot , Pierre Dubreuil , Florian Frugier et al.
3. Colloque de la North East Agricultural University. International Forum of Intelligent Agriculture, Jan 2023, Online, China
Communication dans un congrès hal-03994719 v1

Modeling water transport and perceiving water deficit

Yann Boursiac , Amandine Crabos , Yunji Huang , Thomas Boursat , Christophe Maurel et al.
3. INUPRAG Symposium on Integrative Plant Biology, Feb 2023, Umeå, Sweden
Communication dans un congrès hal-04460135 v1

From morphological to functional root traits assessment with high throughpout phenotyping

Christophe Salon , Marion Prudent , Mustapha Arkoun , Florian Frugier , Bastien Billot et al.
International Symposium “Frontiers in the development and application of plant phenotyping: What are we seeking in plant phenotyping?, Oct 2023, Tokyo, Japan
Communication dans un congrès hal-04224465 v1
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Nutritional interactions in plants (N x P) and new type of GWAS providing full epistatic maps with a gene resolution

Arthur Poitout , Gabriel Krouk , Benoit Lacombe , Sandrine Ruffel
33. International Conference on Arabidopsis Research ICAR2023, Jun 2023, Chiba, Japan
Communication dans un congrès hal-04744045 v1

A systems view of nitrogen signaling interactions

Gabriel Krouk
SEB Annual Conference 2022, Jul 2022, Montpellier, France
Communication dans un congrès hal-04902268 v1

Nitrogen Signaling interactions in plants

Gabriel Krouk
Novel approaches and technologies for actual and future challenges in agricultural chemistry, Feb 2022, Udine, Italy
Communication dans un congrès hal-04902160 v1

Early perception of water deficit in roots

Yann Boursiac , Amandine Crabos , Huang Yunji , Christophe Maurel , Sandrine Ruffel et al.
Réunion GDR Phyp, Mar 2022, Carry-Le-Rouet, France
Communication dans un congrès hal-04164260 v1

Les défis méthodologiques du phénotypage Haut Débit - Expectations of plant high throughput phenotyping and associated tools and methods

Christophe Salon , Arkoum, Mustapha , Bastien Billiot , Virginie Bourion , Pierre Dubreuil et al.
Prospectives de l’INEE, Institut Ecologie et environnement du CNRS, Oct 2022, La Rochelle, France
Communication dans un congrès hal-03994582 v1

Modeling and Gene Regulatory Networks

Gabriel Krouk
Spatial and Temporal Dynamics in Plant Biology, Gordon Research Conference, Jun 2022, Holderness, United States
Communication dans un congrès hal-04902214 v1

Going back to roots: combining phenotyping, ecophysiology and molecular physiology

Christophe Salon , Virginie Bourion , Pierre Dubreuil , Christian Jeudy , Gabriel Krouk et al.
“European Legumes in Transition” Webinar-Series of the projects LEGVALUE and TRUE for Decisionmakers and Stakeholders, May 2021, virtuel, France
Communication dans un congrès hal-03299623 v1

A systems approach to plant signaling interactions

Gabriel Krouk
Plant Science for Climate Emergency, VIB Conference, Jun 2021, Online, Belgium
Communication dans un congrès hal-04902229 v1
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Root ubiquitinome under osmotic stress

Nathalie Berger , Vincent Demolombe , Sonia Hem , Valérie Rofidal , Laura Steinmann et al.
INRAE / Protéomevert, INRAE; Visioconférence, Jun 2021, Online, France
Communication dans un congrès hal-04178068 v1
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Regulatory Network behind Systemic Nitrogen Signaling in Arabidopsis

Arthur Poitout , Gabriel Krouk , Benoit Lacombe , Sandrine Ruffel
31. International Conference on Arabidopsis Research ICAR 2021, The North American Arabidopsis Steering Committee (NAASC), Jun 2021, Online, United States
Communication dans un congrès hal-04749683 v1

Root ubiquitinome under osmotic stress

Nathalie Berger , Vincent Demolombe , Sonia Hem , Valérie Rofidal , Laura Steinmann et al.
INPPO International Plant Proteomics Organization, Visioconférence, Mar 2021, Online, France
Communication dans un congrès hal-04178284 v1

Phenotyping, ecophysiology and molecular physiology to characterize plant root system architecture and plant-plant and plant-microorganisms interactions

Christophe Salon , Virginie Bourion , Pierre Dubreuil , Christian Jeudy , Gabriel Krouk et al.
EPPN 2021 European Plant Phenotyping Network, May 2021, Vituel, France
Communication dans un congrès hal-03299527 v1

High-throughput phenotyping : characterizing physiological and genetic determinants of key traits of the root system

Christophe Salon , Virginie Bourion , Pierre Dubreuil , Christian Jeudy , Gabriel G. Krouk et al.
JST The Second International Workshop on Field Phenotyping and Modeling for Cultivation, Dec 2020, Dijon, France
Communication dans un congrès hal-03099212 v1

High-throughput phenotyping of key legumes (and others) root traits

Christophe Salon , Virginie Bourion , Pierre Dubreuil , Christian Jeudy , Gabriel G. Krouk et al.
Conférence of the College of Agriculture, Northeast Agricultural University, Xiangfang district, Harbin, Heilongjiang Province, P.R.China, Nov 2020, Heilongjiang Province, China
Communication dans un congrès hal-03101989 v1

Regulatory Network behind Systemic Nitrogen Signaling, in Arabidopsis

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák , Gabriel Krouk et al.
International Workshop on organic nitrogen and plant nutrition (OrgN2020), Jan 2020, Ascona, Switzerland
Communication dans un congrès hal-02961496 v1

Interaction between systemic nitrogen signaling and hormones, in Arabidopsis

Sandrine Ruffel , Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák et al.
23. International conference on plant growth substances IPGSA 2019, Jun 2019, Paris, France
Communication dans un congrès hal-02951000 v1

A Systems View of Nitrogen Signaling Interactions

Gabriel Krouk
The Keystone Symposia: Plant Signaling, Molecular Pathways and Network Integration, Jan 2018, Tahoe City, United States
Communication dans un congrès hal-01848569 v1

Interaction between systemic nitrogen signaling and hormones, in arabidopsis

Sandrine Ruffel , Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák et al.
12th Congress of the International Plant Molecular Biology, Aug 2018, Montpellier, France
Communication dans un congrès hal-01868810 v1

Following Turgor Pressure in Plant Cells

Yann Boursiac , Didier Felbacq , Ana Maria Velez-Cardona , Amandine Crabos , Gabriel Krouk et al.
Workshop on Turgor Pressure, GDR PhyP - Biophysique et biomécanique des plantes, Oct 2018, Montpellier, France
Communication dans un congrès hal-02935092 v1

Regulatory Network behind Systemic Nitrogen Signaling, in Arabidopsis

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák , Gabriel Krouk et al.
The Coordination of Development, Sep 2018, Cambridge, United Kingdom
Communication dans un congrès hal-02961538 v1

Gene Regulatory Network Dynamics: Lessons from Plants

Gabriel Krouk
Gordon Research Conference :Plant Molecular Biology "Dynamic Plant Systems", Jun 2018, Holderness, United States
Communication dans un congrès hal-01843736 v1

A Systems View of Nitrogen Signaling Interactions

Gabriel Krouk
International Workshop on Plant Nutritional Responses, Dec 2019, Nagoya, Japan
Communication dans un congrès hal-04902245 v1

Réseaux de régulation génique : que nous apprennent les plantes ?

Gabriel Krouk
Les journées NETBIO, Nov 2017, Toulouse, France
Communication dans un congrès hal-01840953 v1

Deciphering Cytokinin-Dependent Shoot Regulatory Network Controlling Root Response to Nitrate Heterogeneity

Arthur Poitout , Gabriel Krouk , Benoît Lacombe , Sandrine Ruffel
3. International Conference Plant Nutrition, Growth & Environment Interactions, Feb 2017, Vienne, Austria
Communication dans un congrès hal-02961593 v1

Nitrogen-related systemic signaling controlling root response to heterogeneous nitrate availability, in Arabidopsis

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák , Gabriel Krouk et al.
IGER International Symposium on Long-Distance signaling in Plants, Nov 2017, Nagoya, Japan
Communication dans un congrès hal-02961553 v1

Gene Regulatory Networks: Lessons from plants

Gabriel Krouk
Systems Biology Conference (LyonSysBio), Nov 2017, Villeurbanne, France
Communication dans un congrès hal-01840943 v1

The Arabidopsis nitrate transceptor NRT1.1 NPF6.3 that governs distinct pathways is subjected to a complex post transcriptional regulation

Eléonore Bouguyon , Marjorie Pervent , Francine Perrine-Walker , Juliette Rochette , Gabriel Krouk et al.
International Congress "Nitrogen 2016" EMBO Conference, Aug 2016, Montpellier, France
Communication dans un congrès hal-01392869 v1

Nitrate drives the phosphate starvation response through IDR1

Anna Medici , Wojciech Szponarski , Pierre Dangeville , Benoît Lacombe , Hatem Rouached et al.
International Congress "Nitrogen 2016" EMBO Conference: The Nitrogen Nutrition of Plant, EMBO. DEU., Aug 2016, Montpellier, France
Communication dans un congrès hal-01383561 v1

A systems view of nitrogen signaling interactions

Gabriel Krouk
International Congress "Nitrogen 2016" EMBO Conference: The Nitrogen Nutrition of Plant, Aug 2016, Montpellier, France
Communication dans un congrès hal-01384419 v1

The Arabidopsis nitrate transceptor NRT1.1 governs distinct signaling pathways and controls root colonization via local modification of auxin fluxes

Eléonore Bouguyon , Marjorie Pervent , Francine Perrine-Walker , Gabriel Krouk , Emmanuelle Mounier et al.
24th International Conference on Arabidopsis Research, Jun 2013, Sydney, Australia
Communication dans un congrès hal-01601305 v1

The Arabidopsis NRT1.1 transporter acts as a nitrate sensor and governs root colonization via modification of local auxin concentration

Eléonore Bouguyon , Francine Manuella Perrine Walker , Gabriel Krouk , Emmanuelle Mounier , Marjorie Pervent et al.
4th UPSC-INRA (UPRA) Meeting 2012, Mar 2012, Umeå, Sweden
Communication dans un congrès hal-02803875 v1

Systems approach to decipher transcriptional networks controlling nitrogen and hormones signaling interactions

Gabriel Krouk
Plant Growth, Nutrition and Environment interactions, Feb 2012, Vienna, Austria
Communication dans un congrès hal-02803790 v1

Systems approach to decipher transcriptional networks controlling nitrogen and hormones signaling interactions

Gabriel Krouk
Nutrient Sensing and uptake, 2010, San Diego, United States
Communication dans un congrès hal-02812124 v1

Nitrogen signalling from and to nitrate transporters in Arabidopsis

Alain Gojon , Gabriel Krouk , Thomas Girin , Francine Manuella Perrine Walker , Saied El Khafafi et al.
"Nitrogen 2010" 1st International Symposium on the Nitrogen Nutrition of Plants, Jul 2010, Aichi, Japan
Communication dans un congrès hal-02814889 v1
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Nitrate Sensing and Signaling in Plants: Comparative Insights and Nutritional Interactions

Sandrine Ruffel , Jorge del Rosario , Benoît Lacombe , Hatem Rouached , Rodrigo A Gutiérrez et al.
Annual Review of Plant Biology, 2025, 76 (1), pp.25-52. ⟨10.1146/annurev-arplant-083123-053039⟩
Article dans une revue hal-05076570 v1
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Nitrogen sensing and regulatory networks: It’s about time and space

Carly M Shanks , Karin Rothkegel , Matthew D Brooks , Chia-Yi Cheng , José M Alvarez et al.
The Plant cell, 2024, 36 (5), pp.1482-1503. ⟨10.1093/plcell/koae038⟩
Article dans une revue hal-04479330 v1
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Next-Gen GWAS: full 2D epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

Clément Carré , Jean-Baptiste Carluer , Christian Chaux , Chad Estoup-Streiff , Nicolas Roche et al.
Genome Biology, 2024, 25 (1), pp.76. ⟨10.1186/s13059-024-03202-0⟩
Article dans une revue hal-04532636 v1
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Recent advances in unraveling the mystery of combined nutrient stress in plants

Megan Deloose , Joaquin Clúa , Huikyong Cho , Luqing Zheng , Khaled Masmoudi et al.
The Plant Journal, 2024, 117 (6), pp.1764-1780. ⟨10.1111/tpj.16511⟩
Article dans une revue hal-04271704 v1
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Distinct early transcriptional regulations by turgor and osmotic potential in the root of Arabidopsis

Amandine Crabos , Yunji Huang , Thomas Boursat , Christophe Maurel , Sandrine Ruffel et al.
Journal of Experimental Botany, 2023, 74 (18), pp.5917-5930. ⟨10.1093/jxb/erad307⟩
Article dans une revue hal-04193805 v1
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Reduction in PLANT DEFENSIN 1 expression in Arabidopsis thaliana results in increased resistance to pathogens and zinc toxicity

Nga N T Nguyen , Olivier Lamotte , Mohanad Alsulaiman , Sandrine Ruffel , Gabriel Krouk et al.
Journal of Experimental Botany, 2023, 74 (17), pp.5374-5393. ⟨10.1093/jxb/erad228⟩
Article dans une revue hal-04133593 v2
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Unleashing the potential of peptides in agriculture and beyond

Gabriel Krouk , Wojciech Szponarski , Sandrine Ruffel
Trends in Plant Science, 2023, 28 (7), pp.734-736. ⟨10.1016/j.tplants.2023.03.025⟩
Article dans une revue hal-04089178 v1

ARSK1 activates TORC1 signaling to adjust growth to phosphate availability in Arabidopsis

Huikyong Cho , Michael Banf , Zaigham Shahzad , Jelle van Leene , Flavia Bossi et al.
Current Biology, 2023, 33 (9), pp.1778-1786.e5. ⟨10.1016/j.cub.2023.03.005⟩
Article dans une revue hal-04044845 v1
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PDX1.1-dependent biosynthesis of vitamin B6 protects roots from ammonium-induced oxidative stress

Ying Liu , Rodolfo A Maniero , Ricardo F.H. Giehl , Michael Melzer , Priscille Steensma et al.
Molecular Plant, 2022, 15 (5), pp.820-839. ⟨10.1016/j.molp.2022.01.012⟩
Article dans une revue hal-03540746 v1
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Root Membrane Ubiquitinome under Short-Term Osmotic Stress

Nathalie Berger , Vincent Demolombe , Sonia Hem , Valérie Rofidal , Laura Steinmann et al.
International Journal of Molecular Sciences, 2022, 23 (4), pp.1956. ⟨10.3390/ijms23041956⟩
Article dans une revue hal-03593587 v1

Two nitrate sensors, how many more?

Jordan Courrèges-Clercq , Gabriel Krouk
Nature Plants, 2022, 8 (11), pp.1212-1213. ⟨10.1038/s41477-022-01276-x⟩
Article dans une revue hal-03844368 v1
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GARP transcription factors repress Arabidopsis nitrogen starvation response via ROS-dependent and -independent pathways

Alaeddine Safi , Anna Medici , Wojciech Szponarski , Florence Martin , Anne Clément-Vidal et al.
Journal of Experimental Botany, 2021, 72 (10), pp.3881-3901. ⟨10.1093/jxb/erab114⟩
Article dans une revue hal-03217940 v1
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Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade

José M. Alvarez , Anna-Lena Schinke , Matthew D. Brooks , Angelo Pasquino , Lauriebeth Leonelli et al.
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-14979-6⟩
Article dans une revue hal-02507235 v1
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Nitrogen and Phosphorus interactions in plants: from agronomic to physiological and molecular insights

Gabriel Krouk , Takatoshi Kiba
Current Opinion in Plant Biology, 2020, 57, pp.104-109. ⟨10.1016/j.pbi.2020.07.002⟩
Article dans une revue hal-02933543 v1
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The Arabidopsis NRT1.1 transceptor coordinately controls auxin biosynthesis and transport to regulate root branching in response to nitrate

Amel Maghiaoui , Eléonore Bouguyon , Candela Cuesta , Francine Perrine-Walker , Carine Alcon et al.
Journal of Experimental Botany, 2020, 71 (15), pp.4480-4494. ⟨10.1093/jxb/eraa242/5840670⟩
Article dans une revue hal-02619371 v1
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Current status of the multinational Arabidopsis community

Keith Adams , Wagner Araújo , Sebastien Aubourg , Sacha Baginsky , Erica Bakker et al.
Plant Direct, 2020, 4 (7), pp.e00248. ⟨10.1002/pld3.248⟩
Article dans une revue hal-02927028 v1
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Nitrate in 2020: Thirty Years from Transport to Signaling Networks

Elena A. Vidal , José M Alvarez , Viviana Araus , Eleodoro Riveras , Matthew Brooks et al.
The Plant cell, 2020, 32 (7), pp.2094-2119. ⟨10.1105/tpc.19.00748⟩
Article dans une revue hal-02894020 v1
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The Chromatin Factor HNI9 and ELONGATED HYPOCOTYL5 Maintain ROS Homeostasis under High Nitrogen Provision

Fanny Bellegarde , Amel Maghiaoui , Jossia Boucherez , Gabriel Krouk , Laurence Lejay et al.
Plant Physiology, 2019, 180 (1), pp.582-592. ⟨10.1104/pp.18.01473⟩
Article dans une revue hal-02139390 v1
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iPlant Systems Biology (iPSB): An International Network Hub in the Plant Community

Pascal Falter-Braun , Siobhan Brady , Rodrigo Gutiérrez , Gloria Coruzzi , Gabriel Krouk
Molecular Plant, 2019, 12 (6), pp.727-730. ⟨10.1016/j.molp.2019.05.005⟩
Article dans une revue hal-02139469 v1
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Identification of molecular integrators shows that nitrogen actively controls the phosphate starvation response in plants

Anna Medici , Wojciech Szponarski , Pierre Dangeville , Alaeddine Safi , Indeewari Madhubhashini Dissanayake et al.
The Plant cell, 2019, 31 (5), pp.1171-1184. ⟨10.1105/tpc.18.00656⟩
Article dans une revue hal-02107616 v1
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Network Walking charts transcriptional dynamics of nitrogen signaling by integrating validated and predicted genome-wide interactions

Matthew D Brooks , Jacopo Cirrone , Angelo V Pasquino , José M Alvarez , Joseph Swift et al.
Nature Communications, 2019, 10, pp.1569. ⟨10.1038/s41467-019-09522-1⟩
Article dans une revue hal-02122905 v1
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Getting to the Root of Plant Mineral Nutrition: Combinatorial Nutrient Stresses Reveal Emergent Properties

Nadia Bouain , Gabriel Krouk , Benoît Lacombe , Hatem Rouached
Trends in Plant Science, 2019, 24 (6), pp.542-552. ⟨10.1016/j.tplants.2019.03.008⟩
Article dans une revue hal-02139410 v1
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LPCAT1 controls phosphate homeostasis in a zinc-dependent manner.

Mushtak Kisko , Nadia Bouain , Alaeddine Safi , Anna Medici , Robert C Akkers et al.
Article dans une revue hal-01716614 v1
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Responses to Systemic Nitrogen Signaling in Arabidopsis Roots Involve trans-Zeatin in Shoots

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondřej Novák , Gabriel Krouk et al.
The Plant cell, 2018, 30 (6), pp.1243-1257. ⟨10.1105/tpc.18.00011⟩
Article dans une revue hal-01777537 v1
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TransDetect identifies a new regulatory module controlling phosphate accumulation.

Sikander Pal , Mushtak Kisko , Christian Dubos , Benoît Lacombe , Pierre Berthomieu et al.
Plant Physiology, 2017, 175 (2), ⟨10.1104/pp.17.00568⟩
Article dans une revue hal-01578849 v1
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Reverse engineering highlights potential principles of large gene regulatory network design and learning.

Clement Carre , André Mas , Gabriel Krouk
npj Systems Biology and Applications, 2017, 3, pp.17. ⟨10.1038/s41540-017-0019-y⟩
Article dans une revue hal-01573563 v1

The world according to GARP transcription factors.

Alaeddine Safi , Anna Medici , Wojciech Szponarski , Sandrine Ruffel , Benoît Lacombe et al.
Current Opinion in Plant Biology, 2017, 39, pp.159-167. ⟨10.1016/j.pbi.2017.07.006⟩
Article dans une revue hal-01595209 v1

The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology.

Joanna Friesner , Sarah M Assmann , Ruth Bastow , Julia Bailey-Serres , Jim Beynon et al.
Plant Physiology, 2017, 175 (4), pp.1499-1509. ⟨10.1104/pp.17.01490⟩
Article dans une revue hal-01769299 v1

Nitrate signalling: Calcium bridges the nitrate gap.

Gabriel Krouk
Nature Plants, 2017, 3, pp.17095. ⟨10.1038/nplants.2017.95⟩
Article dans une revue hal-01594831 v1
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Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics

Jorge Bellati , Chloé Champeyroux , Sonia Hem , Valerie Rofidal , Gabriel Krouk et al.
Molecular and Cellular Proteomics, 2016, 15 (11), mcp.M116.060087. ⟨10.1074/mcp.M116.060087⟩
Article dans une revue hal-01382938 v1

Nitrate Controls Root Development through Post-Transcriptional Regulation of the NRT1.1/NPF6.3 transporter/sensor.

Eléonore Bouguyon , Francine Perrine-Walker , Marjorie Pervent , Juliette Rochette , Candela Cuesta et al.
Plant Physiology, 2016, 172 (2), ⟨10.1104/pp.16.01047⟩
Article dans une revue hal-01360480 v1
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Combinatorial interaction network of transcriptomic and phenotypic responses to nitrogen and hormones in the Arabidopsis thaliana root

Daniela Ristova , Clement Carre , Marjorie Pervent , Anna Medici , Grace Jaeyoon Kim et al.
Science Signaling, 2016, 9 (451), pp.rs13. ⟨10.1126/scisignal.aaf2768⟩
Article dans une revue hal-01595027 v1

Long-distance nitrate signaling displays cytokinin dependent and independent branches.

Sandrine Ruffel , Arthur Poitout , Gabriel Krouk , Gloria M Coruzzi , Benoît Lacombe
Journal of Integrative Plant Biology, 2016, 58 (3), pp.226-9. ⟨10.1111/jipb.12453⟩
Article dans une revue hal-01321526 v1
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Nitrate transport, sensing and responses in plants

José A. O’brien , Andrea Vega , Eléonore Bouguyon , Gabriel Krouk , Alain Gojon et al.
Molecular Plant, 2016, 9 (6), pp.837-856. ⟨10.1016/j.molp.2016.05.004⟩
Article dans une revue hal-01595480 v1

Hormones and nitrate: a two-way connection.

Gabriel Krouk
Plant Molecular Biology, 2016, 91 (6), pp.599-606. ⟨10.1007/s11103-016-0463-x⟩
Article dans une revue hal-01321091 v1
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Multiple mechanisms of nitrate sensing by Arabidopsis nitrate transceptor NRT1.1

Éléonore Bouguyon , Frédéric Brun , Donaldo Meynard , Martin Kubeš , Marjorie Pervent et al.
Nature Plants, 2015, 1 (3), pp.15015. ⟨10.1038/nplants.2015.15⟩
Article dans une revue hal-01137861 v1

GeneCloud Reveals Semantic Enrichment in Lists of Gene Descriptions

Gabriel Krouk , Clément Carré , Cecile Fizames , Alain Gojon , Sandrine Ruffel et al.
Plant Molecular Biology, 2015, 8 (6), pp.971-973. ⟨10.1016/j.molp.2015.02.005⟩
Article dans une revue hal-01180663 v1
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Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis.

Alessia Para , Ying Li , Amy Marshall-Colón , Kranthi Varala , Nancy J Francoeur et al.
Proceedings of the National Academy of Sciences of the United States of America, 2014, 111 (28), pp.10371-6. ⟨10.1073/pnas.1404657111⟩
Article dans une revue hal-01053035 v1

AtNIGT1/HRS1 integrates nitrate and phosphate signals at the Arabidopsis root tip.

Anna Medici , Amy Marshall-Colon , Elsa Ronzier , Wojciech Szponarski , Rongchen Wang et al.
Nature Communications, 2014, 6, pp.6274. ⟨10.1038/ncomms7274⟩
Article dans une revue hal-01141023 v1

The primary nitrate response: a multifaceted signalling pathway.

Anna Medici , Gabriel Krouk
Journal of Experimental Botany, 2014, 65 (19), pp.5567-76. ⟨10.1093/jxb/eru245⟩
Article dans une revue hal-01118903 v1

Finding a nitrogen niche: a systems integration of local and systemic nitrogen signalling in plants.

Ying Li , Gabriel Krouk , Gloria M Coruzzi , Sandrine Ruffel
Journal of Experimental Botany, 2014, 65 (19), pp.5601-10. ⟨10.1093/jxb/eru263⟩
Article dans une revue hal-01118819 v1
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Integration of responses within and across Arabidopsis natural accessions uncovers loci controlling root systems architecture.

Ulises Rosas , Angelica Cibrian-Jaramillo , Daniela Ristova , Joshua A Banta , Miriam L Gifford et al.
Proceedings of the National Academy of Sciences of the United States of America, 2013, 110 (37), pp.15133-8. ⟨10.1073/pnas.1305883110⟩
Article dans une revue hal-00932276 v1

TARGET: a transient transformation system for genome-wide transcription factor target discovery.

Bastiaan O R Bargmann , Amy Marshall-Colon , Idan Efroni , Sandrine Ruffel , Kenneth D Birnbaum et al.
Molecular Plant, 2013, 6 (3), pp.978-80. ⟨10.1093/mp/sst010⟩
Article dans une revue hal-00860342 v1

ABA transport and transporters.

Yann Boursiac , Sophie Léran , Claire Corratgé-Faillie , Alain Gojon , Gabriel Krouk et al.
Trends in Plant Science, 2013, 18 (6), pp.325-33. ⟨10.1016/j.tplants.2013.01.007⟩
Article dans une revue istex hal-00860434 v1
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A map of cell type-specific auxin responses.

Bastiaan O R Bargmann , Steffen Vanneste , Gabriel Krouk , Tal Nawy , Idan Efroni et al.
Molecular Systems Biology, 2013, 9, pp.688. ⟨10.1038/msb.2013.40⟩
Article dans une revue hal-00873845 v1
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Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.

Elena A Vidal , Tomás C Moyano , Gabriel Krouk , Manpreet S Katari , Milos Tanurdzic et al.
BMC Genomics, 2013, 14 (1), pp.701. ⟨10.1186/1471-2164-14-701⟩
Article dans une revue hal-00921251 v1

RootScape: a landmark-based system for rapid screening of root architecture in Arabidopsis.

Daniela Ristova , Ulises Rosas , Gabriel Krouk , Sandrine Ruffel , Kenneth D Birnbaum et al.
Plant Physiology, 2013, 161 (3), pp.1086-96. ⟨10.1104/pp.112.210872⟩
Article dans une revue hal-00967016 v1
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Gene regulatory networks in plants: learning causality from time and perturbation.

Gabriel Krouk , Jesse Lingeman , Amy Marshall Colon , Gloria Coruzzi , Dennis Shasha
Genome Biology, 2013, 14 (6), pp.123. ⟨10.1186/gb-2013-14-6-123⟩
Article dans une revue hal-00920683 v1

Améliorer l'utilisation du nitrate par les plantes

Gabriel Krouk , Alain Gojon
Biofutur, 2012, pp.41
Article dans une revue hal-02642232 v1

Iron and ROS control of the DownSTream mRNA decay pathway is essential for plant fitness.

Karl Ravet , Guilhem Reyt , Nicolas Arnaud , Gabriel Krouk , El-Batoul Djouani et al.
EMBO Journal, 2012, 31 (1), pp.175-86. ⟨10.1038/emboj.2011.341⟩
Article dans une revue hal-00777600 v1
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A framework integrating plant growth with hormones and nutrients.

Gabriel Krouk , Sandrine Ruffel , Rodrigo A Gutiérrez , Alain Gojon , Nigel M Crawford et al.
Trends in Plant Science, 2011, 16 (4), pp.178-182. ⟨10.1016/j.tplants.2011.02.004⟩
Article dans une revue hal-00586321 v1
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Nitrogen economics of root foraging: transitive closure of the nitrate-cytokinin relay and distinct systemic signaling for N supply vs. demand

Sandrine Ruffel , Gabriel Krouk , Daniela Ristova , Dennis Shasha , Kenneth D Birnbaum et al.
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (45), pp.18524-9. ⟨10.1073/pnas.1108684108⟩
Article dans une revue hal-00662610 v1
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HIGH NITROGEN INSENSITIVE 9 (HNI9)-mediated systemic repression of root NO3- uptake is associated with changes in histone methylation.

Thomas Widiez , El Sayed El Kafafi , Thomas Girin , Alexandre Berr , Sandrine Ruffel et al.
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (32), pp.13329-34. ⟨10.1073/pnas.1017863108⟩
Article dans une revue hal-00623176 v1
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[An original ion (nitrate) sensing mechanism: story of the discovery in plants and perspectives].

Gabriel Krouk , Alain Gojon
Médecine/Sciences, 2011, 27 (12), pp.1045-7. ⟨10.1051/medsci/20112712002⟩
Article dans une revue hal-00662211 v1

Nitrate transceptor(s) in plants.

Alain Gojon , Gabriel Krouk , Francine Perrine-Walker , Edith Laugier
Journal of Experimental Botany, 2011, 62 (7), pp.2299-308. ⟨10.1093/jxb/erq419⟩
Article dans une revue hal-00589335 v1

Nitrate-regulated auxin transport by NRT1.1 defines a mechanism for nutrient sensing in plants.

Gabriel Krouk , Benoît Lacombe , Agnieszka Bielach , Francine Perrine-Walker , Katerina Malinska et al.
Developmental Cell, 2010, 18 (6), pp.927-37. ⟨10.1016/j.devcel.2010.05.008⟩
Article dans une revue hal-00508268 v1

A systems view of responses to nutritional cues in Arabidopsis: toward a paradigm shift for predictive network modeling.

Sandrine Ruffel , Gabriel Krouk , Gloria M Coruzzi
Plant Physiology, 2010, 152 (2), pp.445-52. ⟨10.1104/pp.109.148502⟩
Article dans une revue hal-00457743 v1
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Predictive network modeling of the high-resolution dynamic plant transcriptome in response to nitrate.

Gabriel Krouk , Piotr Mirowski , Yann Lecun , Dennis E Shasha , Gloria M Coruzzi
Genome Biology, 2010, 11 (12), pp.R123. ⟨10.1186/gb-2010-11-12-r123⟩
Article dans une revue hal-00553899 v1
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Modeling the global effect of the basic-leucine zipper transcription factor 1 (bZIP1) on nitrogen and light regulation in Arabidopsis.

Mariana Obertello , Gabriel Krouk , Manpreet S Katari , Suzan J Runko , Gloria M Coruzzi
BMC Systems Biology, 2010, 4, pp.111. ⟨10.1186/1752-0509-4-111⟩
Article dans une revue hal-00533076 v1

Nitrate signaling: adaptation to fluctuating environments.

Gabriel Krouk , Nigel M Crawford , Gloria M Coruzzi , Yi-Fang Tsay
Current Opinion in Plant Biology, 2010, 13 (3), pp.Article in Press. ⟨10.1016/j.pbi.2009.12.003⟩
Article dans une revue istex hal-00462476 v1
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A systems approach uncovers restrictions for signal interactions regulating genome-wide responses to nutritional cues in Arabidopsis

Gabriel Krouk , Daniel Tranchina , Laurence Lejay-Lefebvre , Alexis A. Cruikshank , Dennis Shasha et al.
PLoS Computational Biology, 2009, 5 (3), pp.e1000326. ⟨10.1371/journal.pcbi.1000326⟩
Article dans une revue hal-02653785 v1

Regulation of the high-affinity NO3- uptake system by NRT1.1-mediated NO3- demand signaling in Arabidopsis.

Gabriel Krouk , Pascal Tillard , Alain Gojon
Plant Physiology, 2006, 142 (3), pp.1075-1086. ⟨10.1104/pp.106.087510⟩
Article dans une revue hal-00124930 v1
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Classification and Regression Trees to predict Transcription Factor Combinatorial Interaction in scRNA-seq data

Jean Baptiste Carluer , Laura Steinmann , Clément Carré , André Mas , Gabriel Krouk
2024
Pré-publication, Document de travail hal-04626016 v1
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PeTriBERT : Augmenting BERT with tridimensional encoding for inverse protein folding and design

Baldwin Dumortier , Antoine Liutkus , Clément Carré , Gabriel Krouk
2022
Pré-publication, Document de travail hal-03759515 v1
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Nitrate-regulated growth processes involve activation of gibberellin pathway

Lucie Camut , Barbora Gallova , Lucas Jilli , Mathilde Sirlin-Josserand , Esther Carrera et al.
2022
Pré-publication, Document de travail hal-03858033 v1
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Full epistatic interaction maps retrieve part of missing heritability and improve phenotypic prediction

Clément Carré , Jean Baptiste Carluer , Christian Chaux , Nicolas Roche , André Mas et al.
2022
Pré-publication, Document de travail hal-03749709 v1
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Root membrane ubiquitinome under short-term osmotic stress

Nathalie Berger , Vincent Demolombe , Sonia Hem , Valérie Rofidal , Laura Steinmann et al.
2021
Pré-publication, Document de travail hal-03474600 v1
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HNI9 and HY5 maintain ROS homeostasis under high nitrogen provision in Arabidopsis

Fanny Bellegarde , Amel Maghiaoui , Jossia Boucherez , Gabriel Krouk , Laurence Lejay et al.
2018
Pré-publication, Document de travail hal-02788343 v1
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HRS1/HHOs GARP transcription factors and reactive oxygen species are regulators of Arabidopsis nitrogen starvation response. Affiliation

Alaeddine Safi , Anna Medici , Wojciech Szponarski , Amy Marshall-Colon , Sandrine Ruffel et al.
2018
Pré-publication, Document de travail (preprint/prepublication) hal-01777545 v1
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Revisiting the functional properties of NPF6.3/NRT1.1/CHL1 in xenopus oocytes

Mélanie Noguero , Sophie Léran , Éléonore Bouguyon , Chantal Brachet , Pascal Tillard et al.
2018
Pré-publication, Document de travail (preprint/prepublication) hal-01777543 v1

Investigation of transcription factor dynamics by super-resolution microscopy

Jordan Courrèges-Clercq , Eric Hosy , Gabriel Krouk
SEB Conference Prague 2024, Jul 2024, Prague, Czech Republic.
Poster de conférence hal-04877703 v1

Investigation of transcription factor dynamics by super-resolution microscopy

Jordan Courrèges-Clercq , Eric Hosy , Gabriel Krouk
Journée Posters IPSiM, May 2023, Montpellier, France
Poster de conférence hal-04877933 v1

Strategies of adaptation of the root acquisition system in a heterogeneous nitrate environment in Arabidopsis

Cannelle Armengaud , Xingyu Zheng , Saket Navlakha , Amandine Crabos , Romain Fernandez et al.
Journée Posters IPSiM, May 2023, Montpellier, France
Poster de conférence hal-04877967 v1

Shoot molecular mechanisms involved in root responses to nitrate heterogeneity

Virginia Protto , Arthur Poitout , Benoît Lacombe , Gabriel Krouk , Sandrine Ruffel
Journée Posters IPSiM, May 2023, Montpellier, France.
Poster de conférence hal-04877944 v1

Investigation of transcription factor dynamics by super-resolution microscopy

Jordan Courrèges-Clercq , Eric Hosy , Gabriel Krouk
Imaging Life : the Future (MRI), Oct 2023, Montpellier, France.
Poster de conférence hal-04877861 v1

A genetic and molecular approach to identify transcription factors controlling maize root adaptive response to water deficit

Philippe Nacry , Morgan Maillard , Christian Jeudy , Mickael Lamboeuf , M Bellanger et al.
13. International Conference of the French Society of Plant Biology, Aug 2022, Montpellier, France
Poster de conférence hal-04165717 v1

Silencing of plant defensin type 1 reduces sensitivity to pathogens and zinc toxicity in arabidopsis thaliana

Nga Thi Thuy Nguyen , Olivier Lamotte , Mohanad Alsulaiman , Sandrine Ruffel , Gabriel Krouk et al.
13. International Conference of the French Society of Plant Biology, Aug 2022, Montpellier, France.
Poster de conférence hal-04123213 v1

Root membrane ubiquitinome study identifies E2 Ub conjugating enzymes UBC32 and UBC34 that contribute to primary root growth under osmotic stress

Nathalie Berger , Vincent Demolombe - Liozu , Sonia Hem , Valérie Rofidal , Gabriel Krouk et al.
13. International Conference of the French Society of Plant Biology, Aug 2022, Montpellier, France
Poster de conférence hal-04165488 v1

Welcome and Opening

Gabriel Krouk
EMBO Workshop on international Plant Systems Biology (iPSB), Apr 2021, Online, Germany.
Poster de conférence hal-04902236 v1

Root ubiquitinome under osmotic stress

Nathalie Berger , Vincent Demolombe - Liozu , Sonia Hem , Valérie Rofidal , Laura Steinmann et al.
INPPO International Plant Proteomics, Mar 2021, Online, France.
Poster de conférence hal-04169599 v1

Regulation of NRT2s transporter by the NRT1.1 dependent signaling pathway in response to high NO3

Valentin Chaput , Jianfu Li , Pascal Tillard , Tomás C Moyano , Gabriel Krouk et al.
4th International symposium on the Nitrogen Nutrition of Plants, Sep 2019, Nanjing, China
Poster de conférence hal-02947092 v1

Interaction between nitrate-related long-distance signaling and hormones, in Arabidopsis

Arthur Poitout , Amandine Crabos , Ivan Petřík , Ondrej Novák , Gabriel Krouk et al.
Plant Signaling: Molecular pathways and network integration, Jan 2018, Tahoe city, United States
Poster de conférence hal-02961622 v1
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The TARGET System: Rapid Identification of Direct Targets of Transcription Factors by Gene Regulation in Plant Cells v2

Matthew D. Brooks , Kelsey M. Reed , Gabriel Krouk , Gloria M. Coruzzi , Bastiaan O. R. Bargmann
Qi Song; Zhipeng Tao. Transcription Factor Regulatory Networks, 2594, Humana Press, pp.1-12, 2022, Methods in Molecular Biology, 978-1-0716-2814-0. ⟨10.1007/978-1-0716-2815-7_1⟩
Chapitre d'ouvrage hal-03687926 v1

Approche post-génomique du contrôle de l'absorption de l'azote minéral chez Arabidopsis thaliana

Gabriel Krouk
Sciences du Vivant [q-bio]. Ecole Nationale Supérieure Agronomique de Montpellier, 2006. Français. ⟨NNT : ⟩
Thèse tel-02821516 v1