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UPMaBoSS: A Novel Framework for Dynamic Cell Population Modeling
Gautier Stoll
,
Aurélien Naldi
,
Vincent Noël
,
Eric Viara
,
Emmanuel Barillot
Article dans une revue
hal-03696031v1
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WebMaBoSS: A Web Interface for Simulating Boolean Models Stochastically
Vincent Noël
,
Marco Ruscone
,
Gautier Stoll
,
Eric Viara
,
Andrei Zinovyev
Article dans une revue
hal-03479335v1
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Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop
Anna Niarakis
,
Martin Kuiper
,
Marek Ostaszewski
,
Rahuman Malik Sheriff
,
Cristina Casals-Casas
Article dans une revue
hal-02549796v1
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Metabolic features of cancer cells impact immunosurveillance
Adrien Joseph
,
Pan Juncheng
,
Michele Mondini
,
Nizar Labaied
,
Mauro Loi
Article dans une revue
hal-03272265v1
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Autoimmunity affecting the biliary tract fuels the immunosurveillance of cholangiocarcinoma
Juliette Paillet
,
Céleste Plantureux
,
Sarah Lévesque
,
Julie Le Naour
,
Gautier Stoll
Article dans une revue
hal-03378827v1
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A TLR3 Ligand Reestablishes Chemotherapeutic Responses in the Context of FPR1 Deficiency
Julie Le Naour
,
Peng Liu
,
Liwei Zhao
,
Sandy Adjemian
,
Zsofia Sztupinszki
Article dans une revue
hal-03682026v1
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Paradoxical implication of BAX/BAK in the persistence of tetraploid cells
Jiayin Deng
,
Lucía G Gutiérrez
,
Gautier Stoll
,
Omar Motiño
,
Isabelle Martins
Article dans une revue
hal-03424980v1
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Dynamical Boolean Modeling of Immunogenic Cell Death
Andrea Checcoli
,
Jonathan Pol
,
Aurelien Naldi
,
Vincent Noël
,
Emmanuel Barillot
Article dans une revue
hal-03050475v1
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The abundance of the long intergenic non-coding RNA 01087 differentiates between luminal and triple-negative breast cancers and predicts patient outcome
Fatima Domenica Elisa de Palma
,
Valentina del Monaco
,
Jonathan Pol
,
Margerie Kremer
,
Valeria D’argenio
Article dans une revue
hal-03351350v1
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Publisher Correction: Immunoprophylactic and immunotherapeutic control of hormone receptor-positive breast cancer
Aitziber Buqué
,
Norma Bloy
,
Maria Perez-Lanzón
,
Kristina Iribarren
,
Juliette Humeau
Article dans une revue
hal-03994694v1
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Immunoprophylactic and immunotherapeutic control of hormone receptor-positive breast cancer
Aitziber Buqué
,
Norma Bloy
,
Maria Perez-Lanzón
,
Kristina Iribarren
,
Juliette Humeau
Article dans une revue
hal-03994636v1
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Metabolic enzymes expressed by cancer cells impact the immune infiltrate
Gautier Stoll
,
Margerie Kremer
,
Normal Bloy
,
Adrien Joseph
,
Maria Castedo
Article dans une revue
hal-02461563v1
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AIF-regulated oxidative phosphorylation supports lung cancer development
Shuan Rao
,
Laura Mondragón
,
Blanka Pranjic
,
Toshikatsu Hanada
,
Gautier Stoll
Article dans une revue
hal-02355955v1
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A synergistic triad of chemotherapy, immune checkpoint inhibitors, and caloric restriction mimetics eradicates tumors in mice
Sarah Levesque
,
Julie Le Naour
,
Federico Pietrocola
,
Juliette Paillet
,
Margerie Kremer
Article dans une revue
hal-02297833v1
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Sustained Type I interferon signaling as a mechanism of resistance to PD-1 blockade
Nicolas Jacquelot
,
Takahiro Yamazaki
,
Maria Roberti
,
Connie Duong
,
Miles Andrews
Article dans une revue
hal-02461559v1
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TNFR2/BIRC3-TRAF1 signaling pathway as a novel NK cell immune checkpoint in cancer
Alexandre Ivagnès
,
Meriem Messaoudene
,
Gautier Stoll
,
Bertrand Routy
,
Aurélie Fluckiger
Article dans une revue
hal-03994406v1
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Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)
Nicolas Levy
,
Aurélien Naldi
,
Céline Hernandez
,
Gautier Stoll
,
Denis Thieffry
Article dans une revue
hal-01809081v1
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The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks
Aurélien Naldi
,
Céline Hernandez
,
Nicolas Levy
,
Gautier Stoll
,
Pedro Monteiro
Article dans une revue
hal-01794294v2
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Evaluation of autophagy inducers in epithelial cells carrying the ΔF508 mutation of the cystic fibrosis transmembrane conductance regulator CFTR
Shaoyi Zhang
,
Gautier Stoll
,
José Manuel Bravo San Pedro
,
Valentina Sica
,
Allan Sauvat
Article dans une revue
hal-01757232v1
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A comprehensive approach to the molecular determinants of lifespan using a Boolean model of geroconversion
Loic Verlingue
,
Aurélien Dugourd
,
Gautier Stoll
,
Emmanuel Barillot
,
Laurence Calzone
Article dans une revue
hal-01366791v1
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CCL2/CCR2-Dependent Recruitment of Functional Antigen-Presenting Cells into Tumors upon Chemotherapy
Yuting Ma
,
Stephen R Mattarollo
,
Sandy Adjemian
,
Heng Yang
,
Laetitia Aymeric
Article dans une revue
hal-02047410v1
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Systems biology of Ewing sarcoma: a network model of EWS-FLI1 effect on proliferation and apoptosis
Gautier Stoll
,
Didier Surdez
,
Franck Tirode
,
Karine Laud
,
Emmanuel Barillot
Article dans une revue
inserm-02438745v1
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BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.
Eric Bonnet
,
Laurence Calzone
,
Daniel Rovera
,
Gautier Stoll
,
Emmanuel Barillot
Article dans une revue
inserm-00820930v1
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A Probabilistic Model for Cell Population Phenotyping Using HCS Data
Edouard Pauwels
,
Didier Surdez
,
Gautier Stoll
,
Aurianne Lescure
,
Elaine del Nery
Article dans une revue
hal-03116921v1
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Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm.
Gautier Stoll
,
Eric Viara
,
Emmanuel Barillot
,
Laurence Calzone
Article dans une revue
inserm-00762304v1
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Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling.
Carito Guziolowski
,
Sylvain Blachon
,
Tatiana Baumuratova
,
Gautier Stoll
,
Ovidiu Radulescu
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, 8 (5), pp.1223-1234. ⟨10.1109/TCBB.2010.71⟩
Article dans une revue
inria-00538134v1
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Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network.
Tatiana Baumuratova
,
Didier Surdez
,
Bernard Delyon
,
Gautier Stoll
,
Olivier Delattre
Article dans une revue
inserm-00984711v1
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