Accéder directement au contenu

Stoll Stoll

28
Documents

Publications

Image document

UPMaBoSS: A Novel Framework for Dynamic Cell Population Modeling

Gautier Stoll , Aurélien Naldi , Vincent Noël , Eric Viara , Emmanuel Barillot
Frontiers in Molecular Biosciences, 2022, 9, ⟨10.3389/fmolb.2022.800152⟩
Article dans une revue hal-03696031v1
Image document

WebMaBoSS: A Web Interface for Simulating Boolean Models Stochastically

Vincent Noël , Marco Ruscone , Gautier Stoll , Eric Viara , Andrei Zinovyev
Frontiers in Molecular Biosciences, 2021, 8, ⟨10.3389/fmolb.2021.754444⟩
Article dans une revue hal-03479335v1
Image document

Setting the basis of best practices and standards for curation and annotation of logical models in biology—highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop

Anna Niarakis , Martin Kuiper , Marek Ostaszewski , Rahuman Malik Sheriff , Cristina Casals-Casas
Briefings in Bioinformatics, 2021, 22 (2), pp.1848--1859. ⟨10.1093/bib/bbaa046⟩
Article dans une revue hal-02549796v1
Image document

Metabolic features of cancer cells impact immunosurveillance

Adrien Joseph , Pan Juncheng , Michele Mondini , Nizar Labaied , Mauro Loi
Journal for Immunotherapy of Cancer, 2021, 9 (6), pp.e002362. ⟨10.1136/jitc-2021-002362⟩
Article dans une revue hal-03272265v1
Image document

Autoimmunity affecting the biliary tract fuels the immunosurveillance of cholangiocarcinoma

Juliette Paillet , Céleste Plantureux , Sarah Lévesque , Julie Le Naour , Gautier Stoll
Journal of Experimental Medicine, 2021, 218 (10), pp.1-33. ⟨10.1084/jem.20200853⟩
Article dans une revue hal-03378827v1

A TLR3 Ligand Reestablishes Chemotherapeutic Responses in the Context of FPR1 Deficiency

Julie Le Naour , Peng Liu , Liwei Zhao , Sandy Adjemian , Zsofia Sztupinszki
Cancer Discovery, 2021, 11 (2), pp.408-423. ⟨10.1158/2159-8290.cd-20-0465⟩
Article dans une revue hal-03682026v1
Image document

Paradoxical implication of BAX/BAK in the persistence of tetraploid cells

Jiayin Deng , Lucía G Gutiérrez , Gautier Stoll , Omar Motiño , Isabelle Martins
Cell Death and Disease, 2021, 12 (11), pp.1039. ⟨10.1038/s41419-021-04321-3⟩
Article dans une revue hal-03424980v1
Image document

Dynamical Boolean Modeling of Immunogenic Cell Death

Andrea Checcoli , Jonathan Pol , Aurelien Naldi , Vincent Noël , Emmanuel Barillot
Frontiers in Physiology, 2020, 11, pp.590479. ⟨10.3389/fphys.2020.590479⟩
Article dans une revue hal-03050475v1
Image document

The abundance of the long intergenic non-coding RNA 01087 differentiates between luminal and triple-negative breast cancers and predicts patient outcome

Fatima Domenica Elisa de Palma , Valentina del Monaco , Jonathan Pol , Margerie Kremer , Valeria D’argenio
Pharmacological Research, 2020, 161, pp.105249. ⟨10.1016/j.phrs.2020.105249⟩
Article dans une revue hal-03351350v1
Image document

Publisher Correction: Immunoprophylactic and immunotherapeutic control of hormone receptor-positive breast cancer

Aitziber Buqué , Norma Bloy , Maria Perez-Lanzón , Kristina Iribarren , Juliette Humeau
Nature Communications, 2020, 11 (1), pp.4787. ⟨10.1038/s41467-020-18719-8⟩
Article dans une revue hal-03994694v1
Image document

Immunoprophylactic and immunotherapeutic control of hormone receptor-positive breast cancer

Aitziber Buqué , Norma Bloy , Maria Perez-Lanzón , Kristina Iribarren , Juliette Humeau
Nature Communications, 2020, 11, pp.3819. ⟨10.1038/s41467-020-17644-0⟩
Article dans une revue hal-03994636v1

Metabolic enzymes expressed by cancer cells impact the immune infiltrate

Gautier Stoll , Margerie Kremer , Normal Bloy , Adrien Joseph , Maria Castedo
OncoImmunology, 2019, 8 (6), pp.e1571389. ⟨10.1080/2162402X.2019.1571389⟩
Article dans une revue hal-02461563v1
Image document

AIF-regulated oxidative phosphorylation supports lung cancer development

Shuan Rao , Laura Mondragón , Blanka Pranjic , Toshikatsu Hanada , Gautier Stoll
Cell Research, 2019, 29 (7), pp.579-591. ⟨10.1038/s41422-019-0181-4⟩
Article dans une revue hal-02355955v1
Image document

A synergistic triad of chemotherapy, immune checkpoint inhibitors, and caloric restriction mimetics eradicates tumors in mice

Sarah Levesque , Julie Le Naour , Federico Pietrocola , Juliette Paillet , Margerie Kremer
OncoImmunology, 2019, 8 (11), pp.e1657375. ⟨10.1080/2162402X.2019.1657375⟩
Article dans une revue hal-02297833v1
Image document

Sustained Type I interferon signaling as a mechanism of resistance to PD-1 blockade

Nicolas Jacquelot , Takahiro Yamazaki , Maria Roberti , Connie Duong , Miles Andrews
Cell Research, 2019, 29 (10), pp.846-861. ⟨10.1038/s41422-019-0224-x⟩
Article dans une revue hal-02461559v1

TNFR2/BIRC3-TRAF1 signaling pathway as a novel NK cell immune checkpoint in cancer

Alexandre Ivagnès , Meriem Messaoudene , Gautier Stoll , Bertrand Routy , Aurélie Fluckiger
OncoImmunology, 2018, 7 (12), pp.e1386826. ⟨10.1080/2162402X.2017.1386826⟩
Article dans une revue hal-03994406v1
Image document

Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

Nicolas Levy , Aurélien Naldi , Céline Hernandez , Gautier Stoll , Denis Thieffry
Frontiers in Physiology, 2018, 9, pp.787. ⟨10.1101/319780⟩
Article dans une revue hal-01809081v1
Image document

The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

Aurélien Naldi , Céline Hernandez , Nicolas Levy , Gautier Stoll , Pedro Monteiro
Frontiers in Physiology, 2018, 9, pp.n°680:1-13. ⟨10.3389/fphys.2018.00680⟩
Article dans une revue hal-01794294v2
Image document

Evaluation of autophagy inducers in epithelial cells carrying the ΔF508 mutation of the cystic fibrosis transmembrane conductance regulator CFTR

Shaoyi Zhang , Gautier Stoll , José Manuel Bravo San Pedro , Valentina Sica , Allan Sauvat
Cell Death and Disease, 2018, 9, pp.191. ⟨10.1038/s41419-017-0235-9⟩
Article dans une revue hal-01757232v1
Image document

A comprehensive approach to the molecular determinants of lifespan using a Boolean model of geroconversion

Loic Verlingue , Aurélien Dugourd , Gautier Stoll , Emmanuel Barillot , Laurence Calzone
Aging Cell, 2016, 15 (6), pp.1018-1026. ⟨10.1111/acel.12504⟩
Article dans une revue hal-01366791v1

CCL2/CCR2-Dependent Recruitment of Functional Antigen-Presenting Cells into Tumors upon Chemotherapy

Yuting Ma , Stephen R Mattarollo , Sandy Adjemian , Heng Yang , Laetitia Aymeric
Cancer Research, 2014, 74 (2), pp.436-445. ⟨10.1158/0008-5472.can-13-1265⟩
Article dans une revue hal-02047410v1
Image document

Systems biology of Ewing sarcoma: a network model of EWS-FLI1 effect on proliferation and apoptosis

Gautier Stoll , Didier Surdez , Franck Tirode , Karine Laud , Emmanuel Barillot
Nucleic Acids Research, 2013, 41 (19), pp.8853-8871. ⟨10.1093/nar/gkt678⟩
Article dans une revue inserm-02438745v1
Image document

BiNoM 2.0, a Cytoscape plugin for accessing and analyzing pathways using standard systems biology formats.

Eric Bonnet , Laurence Calzone , Daniel Rovera , Gautier Stoll , Emmanuel Barillot
BMC Systems Biology, 2013, 7 (1), pp.18. ⟨10.1186/1752-0509-7-18⟩
Article dans une revue inserm-00820930v1

A Probabilistic Model for Cell Population Phenotyping Using HCS Data

Edouard Pauwels , Didier Surdez , Gautier Stoll , Aurianne Lescure , Elaine del Nery
PLoS ONE, 2012, 7 (8), pp.e42715. ⟨10.1371/journal.pone.0042715⟩
Article dans une revue hal-03116921v1
Image document

Continuous time Boolean modeling for biological signaling: application of Gillespie algorithm.

Gautier Stoll , Eric Viara , Emmanuel Barillot , Laurence Calzone
BMC Systems Biology, 2012, 6 (1), pp.116. ⟨10.1186/1752-0509-6-116⟩
Article dans une revue inserm-00762304v1

Designing Logical Rules to Model the Response of Biomolecular Networks with Complex Interactions: An Application to Cancer Modeling.

Carito Guziolowski , Sylvain Blachon , Tatiana Baumuratova , Gautier Stoll , Ovidiu Radulescu
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, 8 (5), pp.1223-1234. ⟨10.1109/TCBB.2010.71⟩
Article dans une revue inria-00538134v1
Image document

Localizing potentially active post-transcriptional regulations in the Ewing's sarcoma gene regulatory network.

Tatiana Baumuratova , Didier Surdez , Bernard Delyon , Gautier Stoll , Olivier Delattre
BMC Systems Biology, 2010, 4 (1), pp.146. ⟨10.1186/1752-0509-4-146⟩
Article dans une revue inserm-00984711v1

Method for Relating Inter-patient Gene Copy Numbers Variations with Gene Expression via Gene Influence Networks

Sylvain Blachon , Gautier Stoll , Carito Guziolowski , Andrei Zinovyev , Emmanuel Barillot
AIAI 2009 Workshop -- Workshop on Biomedical Informatics and Intelligent Approaches in the Support of Genomic Medicine (BMIINT), Apr 2009, Thessalonik, Greece. pp.72-87
Communication dans un congrès inria-00429801v1