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Guillaume Blin

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Publications

On the Approximability of the Minimum Weight t-partite Clique Problem

Geoffrey Solano , Guillaume Blin , Mathieu Raffinot , Jhoirene Clemente , Jaime Caro et al.
Journal of Graph Algorithms and Applications, 2020, 24 (3), pp.171-190. ⟨10.7155/jgaa.00525⟩
Journal articles hal-02547506v1

Geant4 physics list comparison for the simulation of phase-contrast mammography (XPulse project)

V. Beaudoux , Guillaume Blin , B. Barbrel , G. Kantor , C. Zacharatou et al.
Physica Medica, 2019, 60, pp.66-75. ⟨10.1016/j.ejmp.2019.03.026⟩
Journal articles hal-02120079v1
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Rank aggregation with ties: Experiments and Analysis

Bryan Brancotte , Bo Yang , Guillaume Blin , Sarah Cohen-Boulakia , Alain Denise et al.
Proceedings of the VLDB Endowment (PVLDB), 2015, Proceedings of the VLDB Endowment (PVLDB), 8 (11), pp.1202-1213. ⟨10.14778/2809974.2809982⟩
Journal articles hal-01165336v1
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Spot Weight Adaptation for Moving Target in Spot Scanning Proton Therapy

Paul Morel , Xiadong Wu , Guillaume Blin , Stéphane Vialette , Ryan Flynn et al.
Frontiers in Oncology, 2015, 5 (119), pp.1-7. ⟨10.3389/fonc.2015.00119⟩
Journal articles hal-01151923v1

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model

Mohammed El-Kebir , Hayssam Soueidan , Thomas Hume , Daniela Beisser , Marcus Dittrich et al.
Bioinformatics, 2015, 31 (19), ⟨10.1093/bioinformatics/btv316⟩
Journal articles hal-01248545v1

MSPT: An open-source motion simulator for proton therapy

Paul Morel , Ryan Thomas Flynn , Edgar Gelover , Guillaume Blin , Stéphane Vialette et al.
Biomedical Physics & Engineering Express, 2015, 1 (3), 12 pp
Journal articles hal-01171799v1
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Complexity Insights of the Minimum Duplication Problem

Guillaume Blin , Paola Bonizzoni , Riccardo Dondi , Romeo Rizzi , Florian Sikora et al.
Theoretical Computer Science, 2014, 530, pp.66-79
Journal articles hal-00948488v1
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Minimum Mosaic Inference of a Set of Recombinants

Guillaume Blin , Romeo Rizzi , Florian Sikora , Stéphane Vialette
International Journal of Foundations of Computer Science, 2013, 24 (1), pp.51-66. ⟨10.1142/S0129054113400042⟩
Journal articles hal-00679269v1
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A faster algorithm for finding minimum Tucker submatrices

Guillaume Blin , Romeo Rizzi , Stéphane Vialette
Theory of Computing Systems, 2012, 51 (3), pp.270-281. ⟨10.1007/s00224-012-9388-1⟩
Journal articles hal-00657340v1
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On the Parameterized Complexity of the Repetition Free Longest Common Subsequence Problem

Guillaume Blin , Paola Bonizzoni , Riccardo Dondi , Florian Sikora
Information Processing Letters, 2012, 112 (7), pp.272-276. ⟨10.1016/j.ipl.2011.12.009⟩
Journal articles hal-00637255v2
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A survey of RDF storage approaches

David C. Faye , Olivier Curé , Guillaume Blin
Revue Africaine de Recherche en Informatique et Mathématiques Appliquées, 2012, Volume 15, 2012, pp.11-35. ⟨10.46298/arima.1956⟩
Journal articles hal-01299496v1
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Median of an odd number of permutations

Guillaume Blin , Maxime Crochemore , Sylvie Hamel , Stéphane Vialette
Pure Mathematics and Applications, 2011, 21 (2), pp.161 - 175
Journal articles hal-00619773v1
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Querying Graphs in Protein-Protein Interactions Networks using Feedback Vertex Set

Guillaume Blin , Florian Sikora , Stéphane Vialette
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2010, 7 (4), pp.628-635
Journal articles hal-00619763v1
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Finding Nested Common Intervals Efficiently

Guillaume Blin , David Célestin Faye , Jens Stoye
Journal of Computational Biology, 2010, 17 (9), pp.1183-1194
Journal articles hal-00619751v1
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Alignments of RNA structures.

Guillaume Blin , Alain Denise , Serge Dulucq , Claire Herrbach , Helene Touzet et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2010, 7 (2), pp.309-322. ⟨10.1109/TCBB.2008.28⟩
Journal articles hal-00506348v1
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Fixed-Parameter Algorithms For Protein Similarity Search Under mRNA Structure Constraints

Guillaume Blin , Guillaume Fertin , Danny Hermelin , Stéphane Vialette
Journal of Discrete Algorithms, 2008, 6 (4), pp.618-626
Journal articles hal-00416442v1
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Comparing Genomes with Duplications: a Computational Complexity Point of View

Guillaume Blin , Cedric Chauve , Guillaume Fertin , Romeo Rizzi , Stéphane Vialette et al.
ACM Transactions on Computational Logic, 2007, 4 (4), pp.523-534
Journal articles hal-00417720v1
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Extracting Constrained 2-Interval Subsets in 2-Interval Sets

Guillaume Blin , Guillaume Fertin , Stéphane Vialette
Theoretical Computer Science, 2007, 385 (1-3), pp.241-263
Journal articles hal-00417717v1
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Gene Maps Linearization using Genomic Rearrangement Distances

Guillaume Blin , Eric Blais , Danny Hermelin , Pierre Guillon , Mathieu Blanchette et al.
Journal of Computational Biology, 2007, 14 (4), pp.394-407
Journal articles hal-00619755v1
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What makes the Arc-Preserving Subsequence problem hard ?

Guillaume Blin , Guillaume Fertin , Romeo Rizzi , Stéphane Vialette
LNCS Transactions on Computational Systems Biology, 2005, 2, pp.1-36
Journal articles hal-00417738v1

Algorithmic challenges in radiation therapy

Guillaume Blin
Complexity, Algorithms, Automata and Logic Meet (CAALM), Jan 2019, Chennai, India
Conference papers hal-02055624v1

Nearest constrained circular words

Guillaume Blin , Alexandre Blondin-Massé , Marie Gasparoux , Sylvie Hamel , Elise Vandomme et al.
29th Annual Symposium on Combinatorial Pattern Matching (CPM'18), Jul 2018, Qingdao, China. pp.6:1--6:14
Conference papers hal-01742563v1
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SOBRA - Shielding Optimization for BRAchytherapy

Guillaume Blin , Marie Gasparoux , Sebastian Ordyniak , Alexandru Popa
27th International Workshop on Combinatorial Algorithms, Aug 2016, Helsinki, Finland
Conference papers hal-01331027v1

Rank aggregation with ties: Experiments and Analysis

Bryan Brancotte , Bo Yang , Guillaume Blin , Sarah Cohen-Boulakia , Alain Denise et al.
The 41st International Conference on Very Large Data Bases, Aug 2015, Kohala Coast, Hawaï, United States
Conference papers hal-01152098v1
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Approximation Hardness of the Cross-Species Conserved Active Modules Detection Problem

Thomas Hume , Hayssam Soueidan , Macha Nikolski , Guillaume Blin
41st International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM'15), Jan 2015, Pec pod Sněžkou, Czech Republic. pp. 242-253
Conference papers hal-01056406v1

MISTREAT: MotIon Simulator in proton-therapy TREATment

Guillaume Blin
The Workshop on Bioinformatics and Stringology 2014 (BioS 2014), Feb 2014, Dakha, Bangladesh
Conference papers hal-00918205v1
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Towards unlocking the full potential of Multileaf Collimators

Guillaume Blin , Paul Morel , Romeo Rizzi , Stéphane Vialette
40th International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM), Jan 2014, High Tatras, Slovakia. pp.138-149
Conference papers hal-00859708v1
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Approximation and Hardness Results for the Maximum Edges in Transitive Closure Problem

Anna Adamaszek , Guillaume Blin , Alexandru Popa
25th International Workshop on Combinatorial Algorithms (IWOCA'14), Oct 2014, Duluth, Minnesota, United States. pp. 13-23, ⟨10.1007/978-3-319-19315-1⟩
Conference papers hal-01059381v1
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An Update Strategy for the WaterFowl RDF Data Store

Olivier Curé , Guillaume Blin
13th International Semantic Web Conference (ISWC 2014), 2014, Riva del Garda, Italy
Conference papers hal-01740550v1

WaterFowl: a Compact, Self-indexed and Inference-enabled Immutable RDF Store

Olivier Curé , Guillaume Blin , Dominique Revuz , David Célestin Faye
11th European Semantic Web Conference (ESWC'14), May 2014, Anissaras, Greece. pp.302-316, ⟨10.1007/978-3-319-07443-6_21⟩
Conference papers hal-00952845v1

On the Parameterized Complexity of the Repetition Free Longest Common Subsequence Problem

Guillaume Blin , Paola Bonizzoni , Riccardo Dondi , Florian Sikora
International Workshop on Approximation, Parameterized and EXact algorithms (APEX'13), Jul 2013, Riga, Latvia. 3 pp
Conference papers hal-00949104v1
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Hardness of longest common subsequence for sequences with bounded run-lengths

Guillaume Blin , Laurent Bulteau , Minghui Jiang , Pedro J. Tejada , Stéphane Vialette et al.
23rd Annual Symposium on Combinatorial Pattern Matching (CPM'12), Jul 2012, Helsinki, Finland. pp.138-148, ⟨10.1007/978-3-642-31265-6_11⟩
Conference papers hal-00683311v1
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An algorithmic view on multi-related-segments: A unifying model for approximate common interval

Xiao Yang , Florian Sikora , Guillaume Blin , Sylvie Hamel , Roméo Rizzi et al.
9th annual conference on Theory and Applications of Models of Computation (TAMC), May 2012, Beijing, China. pp.319-329, ⟨10.1007/978-3-642-29952-0_33⟩
Conference papers hal-00630150v2
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Complexity Insights of the Minimum Duplication Problem

Guillaume Blin , Paola Bonizzoni , Riccardo Dondi , Romeo Rizzi , Florian Sikora et al.
38th International Conference on Current Trends in Theory and Practice of Computer Science (SOFSEM 2012), Jan 2012, Špindleruv Mlýn, Czech Republic. pp.153-164
Conference papers hal-00629047v1
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RDF triples management in roStore

David Faye , Olivier Curé , Guillaume Blin , Cheikh Thiam
IC 2011, 22èmes Journées francophones d'Ingénierie des Connaissances, May 2012, Chambéry, France. pp.755-770
Conference papers hal-00746736v1
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The longest common subsequence problem with crossing-free arc-annotated sequences

Guillaume Blin , Minghui Jiang , Stéphane Vialette
19th edition of the International Symposium on String Processing and Information Retrieval (SPIRE 2012), Oct 2012, Cartagena de Indias, Colombia. pp. 130--142
Conference papers hal-00713431v1
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Minimum Mosaic Inference of a Set of Recombinants

Guillaume Blin , Romeo Rizzi , Florian Sikora , Stéphane Vialette
17th Computing: the Australasian Theory Symposium (CATS'11), Jan 2011, Perth, Australia. pp.23-30
Conference papers hal-00620371v1
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A Polynomial-Time Algorithm for Finding a Minimal Conflicting Set Containing a Given Row

Guillaume Blin , Romeo Rizzi , Stéphane Vialette
6th International Computer Science Symposium in Russia (CSR'11), 2011, St Petersbourg, Russia. pp.373-384, ⟨10.1007/978-3-642-20712-9_29⟩
Conference papers hal-00620378v1
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Algorithmic Aspects of Heterogeneous Biological Networks Comparison

Guillaume Blin , Guillaume Fertin , Hafedh Mohamed-Babou , Irena Rusu , Florian Sikora et al.
COCOA 2011, 2011, Zhangjiajie, China. pp.272-286, ⟨10.1007/978-3-642-22616-8_22⟩
Conference papers hal-00606375v1
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Towards a better insight of RDF triples Ontology-guided Storage system abilities

Olivier Curé , David Célestin Faye , Guillaume Blin
6th International Workshop on Scalable Semantic Web Knowledge Base Systems (SSWS'10), 2010, Shanghai, China. 10pp
Conference papers hal-00620329v1
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A faster algorithm for finding minimum Tucker submatrices

Guillaume Blin , Romeo Rizzi , Stéphane Vialette
6th Computability in Europe (CiE'10), 2010, Portugal. pp.69-77
Conference papers hal-00620380v1
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Comparing RNA structures with biologically relevant operations cannot be done without strong combinatorial restrictions

Guillaume Blin , Sylvie Hamel , Stéphane Vialette
4th Workshop on Algorithms and Computation (WALCOM'10), Feb 2010, Dhaka, Bangladesh, Bangladesh. pp.149-160
Conference papers hal-00620327v1
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GraMoFoNe: a Cytoscape plugin for querying motifs without topology in Protein-Protein Interactions networks

Guillaume Blin , Florian Sikora , Stéphane Vialette
Bioinformatics and Computational Biology (BICoB'10), Mar 2010, Honolulu, United States. pp.38-43
Conference papers hal-00425661v1

Querying Protein-Protein Interaction Networks

Guillaume Blin , Florian Sikora , Stéphane Vialette
5th International Symposium on Bioinformatics Research and Applications (ISBRA'09), May 2009, Fort Lauderdale, United States. pp.52-62
Conference papers hal-00620391v1
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The Exemplar Breakpoint Distance for non-trivial genomes cannot be approximated

Guillaume Blin , Guillaume Fertin , Florian Sikora , Stéphane Vialette
WALCOM 2009, 2009, Kolkata, India. pp.357-368
Conference papers hal-00416491v1
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Finding the median of three permutations under the Kendall-tau distance

Guillaume Blin , Maxime Crochemore , Sylvie Hamel , Stéphane Vialette
7th annual international conference on Permutation Patterns, Jul 2009, Firenze, Italy. pp.6
Conference papers hal-00620459v1
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Finding Nested Common Intervals Efficiently

Guillaume Blin , Jens Stoye
7th RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG'09), Sep 2009, Budapest, Hungary. pp.59-69
Conference papers hal-00620365v1
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Comparing RNA Structures: Towards an Intermediate Model Between the EDIT and the LAPCS Problems

Guillaume Blin , Guillaume Fertin , Gaël Herry , Stéphane Vialette
Brazilian Symposium on Bioinformatics (BSB 2007), Aug 2007, Angra dos Reis, Brazil. pp.101-112
Conference papers hal-00417918v1
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Extending the Hardness of RNA Secondary Structure Comparison

Guillaume Blin , Guillaume Fertin , Irena Rusu , Christine Sinoquet
1st International Symposium on Combinatorics, Algorithms, Probabilistic and Experimental Methodologies (ESCAPE 2007), Apr 2007, Hangzhou, China. pp.140-151
Conference papers hal-00418248v1
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How to compare arc-annotated sequences: The alignment hierarchy

Guillaume Blin , Helene Touzet
13th String Processing and Information Retrieval, Oct 2006, Glasgow, United Kingdom. pp.291-303
Conference papers inria-00178671v1
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Inferring Gene Orders from Gene Maps using the Breakpoint Distance

Guillaume Blin , Eric Blais , Pierre Guillon , Mathieu Blanchette , Nadia El-Mabrouk et al.
4th Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG'06), Sep 2006, Montréal, Canada. pp.99-112
Conference papers hal-00620364v1
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Inferring Positional Homologs with Common Intervals of Sequences

Guillaume Blin , Annie Chateau , Cedric Chauve , Yannick Gingras
4th Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG'06), Sep 2006, Montreal, Canada. pp.24-38
Conference papers hal-00620367v1
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What Makes the Arc-Preserving Subsequence Problem Hard?

Guillaume Blin , Guillaume Fertin , Romeo Rizzi , Stéphane Vialette
5th Int. Workshop on Bioinformatics Research and Applications (IWBRA'05), May 2005, Atlanta, GA, USA, United States. pp.860-868
Conference papers hal-00620359v1
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Fixed-Parameter Algorithms for Protein Similarity Search Under mRNA Structure Constraints

Guillaume Blin , Guillaume Fertin , Danny Hermelin , Stéphane Vialette
31st International Workshop on Graph-Theoretic Concepts in Computer Science (WG'05), Jun 2005, Metz, France, France. pp.271-282
Conference papers hal-00620363v1
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Genes Order and Phylogenetic Reconstruction: Application to $\gamma$-Proteobacteria

Guillaume Blin , Cedric Chauve , Guillaume Fertin
3rd Annual RECOMB Satellite Workshop on Comparative Genomics (RECOMB-CG'05), Sep 2005, Dublin, Ireland, Ireland. pp.11-20
Conference papers hal-00620362v1
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Conserved Interval Distance Computation Between Non-trivial Genomes

Guillaume Blin , Roméo Rizzi
11th Annual International Conference Computing and Combinatorics (COCOON'05), Aug 2005, Kunming, China, China. pp.22-31
Conference papers hal-00620353v1

Pattern Matching in Arc-Annotated Sequences: New Results for the APS Problem

Guillaume Blin , Guillaume Fertin , Roméo Rizzi , Stéphane Vialette
5th Journées Ouvertes de Biologie, Informatique et Mathématiques (JOBIM'04), 2004, Montréal, Quebec, Canada. 12 pp
Conference papers hal-00620330v1
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New Results for the 2-Interval Pattern Problem

Guillaume Blin , Guillaume Fertin , Stéphane Vialette
15th Symposium on Combinatorial Pattern Matching (CPM'04), Jul 2004, Istanbul, Turkey, Turkey. pp.311-322
Conference papers hal-00620366v1
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The breakpoint distance for signed sequences

Guillaume Blin , Guillaume Fertin , Cedric Chauve
1st Conference on Algorithms and Computational Methods for biochemical and Evolutionary Networks (CompBioNets'04), Dec 2004, Recife, Brazil, Brazil. pp.3-16
Conference papers hal-00620356v1

RDF Database Systems, 1st Edition

Olivier Curé , Guillaume Blin
Morgan Kaufmann, pp.248, 2014, 9780127999579
Books hal-01083133v1

Analyse de séquences : des méthodes combinatoires et algorithmiques

Christian J. Michel , Guillaume Blin , Florian Sikora
Étienne Baudrier, Loïc Mazo. Informatique Mathématique - Une photographie en 2016, , pp.57-87, 2016, 978-2-271-09335-6
Book sections hal-01296618v1

Algorithmic Aspects of Arc-Annotated Sequences

Guillaume Blin , Maxime Crochemore , Stéphane Vialette
Elloumi Mourad, Zomaya Albert Y. Algorithms in Computational Molecular Biology: Techniques, Approaches and Applications, Wiley, pp.113-126, 2011
Book sections hal-00620821v1
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Combinatorial Objects in Bio-Algorithmics: Related problems and complexities

Guillaume Blin
Bioinformatics [q-bio.QM]. Université Paris-Est, 2012
Habilitation à diriger des recherches tel-00711879v1