Access content directly

Germain Forestier

125
Documents
Researcher identifiers

Presentation

I'm a professor of computer science working on data science with a special interest in processing temporal data (time series). I mostly apply my work to surgical data science, digital pathology and geosciences. Find more information about my work on my personnal page: <https://germain-forestier.info/>

Publications

Image document

Weakly Supervised Learning using Attention gates for colon cancer histopathological image segmentation

Amina Ben Hamida , Maxime Devanne , Jonathan Weber , Caroline Truntzer , Valentin Derangère
Artificial Intelligence in Medicine, 2022, ⟨10.1016/j.artmed.2022.102407⟩
Journal articles hal-03797652v1
Image document

Multisenge: a Multimodal and Multitemporal Benchmark Dataset for Land Use/Land Cover Remote Sensing Applications

Romain Wenger , A. Puissant , J. Weber , L. Idoumghar , G. Forestier
ISPRS Annals of the Photogrammetry, Remote Sensing and Spatial Information Sciences, 2022, V-3-2022, pp.635-640. ⟨10.5194/isprs-annals-V-3-2022-635-2022⟩
Journal articles hal-03776281v1
Image document

Surgical data science – from concepts toward clinical translation

Lena Maier-Hein , Matthias Eisenmann , Duygu Sarikaya , Keno März , Toby Collins
Medical Image Analysis, 2022, 76, pp.102306. ⟨10.1016/j.media.2021.102306⟩
Journal articles hal-03515942v1

U-Net feature fusion for multi-class semantic segmentation of urban fabrics from Sentinel-2 imagery: an application on Grand Est Region, France

Romain Wenger , Anne Puissant , Jonathan Weber , Lhassane Idoumghar , Germain Forestier
International Journal of Remote Sensing, 2022, 43 (6), pp.1983-2011. ⟨10.1080/01431161.2022.2054295⟩
Journal articles hal-03638200v1

Du projet DémoUHA (PIA4, AMI DémoES) à la stratégie numérique : réflexions critiques et pistes pour une « transformation numérique responsable »

Dominique Kern , Germain Forestier
Distances et Médiations des Savoirs, 2022, 38, ⟨10.4000/dms.7990⟩
Journal articles hal-03767484v1
Image document

End-to-end deep representation learning for time series clustering: a comparative study

Baptiste Lafabregue , Jonathan Weber , Pierre Gançarski , Germain Forestier
Data Mining and Knowledge Discovery, 2021, ⟨10.1007/s10618-021-00796-y⟩
Journal articles hal-03407061v1
Image document

An automatic framework for Fusing Information from differently stained consecutive digital whole slide images: A case study in renal histology

Odyssée Merveille , Thomas Lampert , Jessica Schmitz , Germain Forestier , Friedrich Feuerhake
Computer Methods and Programs in Biomedicine, inPress, pp.106157. ⟨10.1016/j.cmpb.2021.106157⟩
Journal articles hal-03224927v1
Image document

Recent trends in crowd analysis : A review

Mounir Bendali-Braham , Jonathan Weber , Germain Forestier , Lhassane Idoumghar , Pierre-Alain Muller
Machine Learning with Applications, 2021, 4, pp.100023. ⟨10.1016/j.mlwa.2021.100023⟩
Journal articles hal-03671937v1
Image document

Deep learning for colon cancer histopathological images analysis

Amina Ben Hamida , Maxime Devanne , Jonathan Weber , Caroline Truntzer , Valentin Derangère
Computers in Biology and Medicine, 2021, ⟨10.1016/j.compbiomed.2021.104730⟩
Journal articles hal-03321646v1
Image document

A review of alignment based similarity measures for web usage mining

Vinh-Trung Luu , Germain Forestier , Jonathan Weber , Paul Bourgeois , Fahima Djelil
Artificial Intelligence Review, 2020, 53 (3), pp.1529-1551. ⟨10.1007/s10462-019-09712-9⟩
Journal articles hal-02632870v1
Image document

InceptionTime: Finding AlexNet for time series classification

Hassan Ismail Fawaz , Benjamin Lucas , Germain Forestier , Charlotte Pelletier , Daniel F Schmidt
Data Mining and Knowledge Discovery, 2020, 34 (6), pp.1936-1962. ⟨10.1007/s10618-020-00710-y⟩
Journal articles hal-03181438v1
Image document

Intelligence artificielle et analyse d’images histologiques : Opportunités et challenges

Cédric Wemmert , Jonathan Weber , Germain Forestier
Revue Française d'Histotechnologie, 2020, 32 (1), pp.213-238. ⟨10.25830/afh.rfh.2020.32.213.238⟩
Journal articles hal-03979724v1
Image document

Graph-based description of tertiary lymphoid organs at single-cell level

Nadine S Schaadt , Ralf Schönmeyer , Germain Forestier , Nicolas Brieu , Peter Braubach
PLoS Computational Biology, 2020, 16 (2), pp.e1007385. ⟨10.1371/journal.pcbi.1007385⟩
Journal articles hal-02633072v1
Image document

Crowdsourcing of Histological Image Labeling and Object Delineation by Medical Students

Anne Grote , Nadine S Schaadt , Germain Forestier , Friedrich Feuerhake , Cédric Wemmert
IEEE Transactions on Medical Imaging, 2019, 38 (5), pp.1284-1294. ⟨10.1109/TMI.2018.2883237⟩
Journal articles hal-02299285v1
Image document

Deconstructing the diagnostic reasoning of human versus artificial intelligence

Thierry Pelaccia , Germain Forestier , Cédric Wemmert
CMAJ, 2019, 191 (48), pp.E1332-E1335. ⟨10.1503/cmaj.190506⟩
Journal articles hal-02632899v1
Image document

Deep learning for time series classification: a review

Hassan Ismail Fawaz , Germain Forestier , Jonathan Weber , Lhassane Idoumghar , Pierre-Alain Muller
Data Mining and Knowledge Discovery, 2019, 33 (4), pp.917-963. ⟨10.1007/s10618-019-00619-1⟩
Journal articles hal-02365025v2
Image document

Accurate and interpretable evaluation of surgical skills from kinematic data using fully convolutional neural networks

Hassan Ismail Fawaz , Germain Forestier , Jonathan Weber , Lhassane Idoumghar , Pierre-Alain Muller
International Journal of Computer Assisted Radiology and Surgery, 2019, 14 (9), pp.1611-1617. ⟨10.1007/s11548-019-02039-4⟩
Journal articles hal-02434381v1
Image document

Toward a standard ontology of surgical process models

Bernard Gibaud , Germain Forestier , Carolin Feldmann , Giancarlo Ferrigno , Paulo Gonçalves
International Journal of Computer Assisted Radiology and Surgery, 2018, 13 (9), pp.1397-1408. ⟨10.1007/s11548-018-1824-5⟩
Journal articles hal-01862533v3
Image document

Constrained distance based clustering for time-series: a comparative and experimental study

Thomas Lampert , Thi-Bich-Hanh Dao , Baptiste Lafabregue , Nicolas Serrette , Germain Forestier
Data Mining and Knowledge Discovery, 2018, 32 (6), pp.1663-1707. ⟨10.1007/s10618-018-0573-y⟩
Journal articles hal-01831637v1
Image document

Sequential surgical signatures in micro-suturing task

Arnaud Huaulmé , Kanako Harada , Germain Forestier , Mamoru Mitsuishi , Pierre Jannin
International Journal of Computer Assisted Radiology and Surgery, 2018, 13 (9), pp.1419-1428. ⟨10.1007/s11548-018-1775-x⟩
Journal articles hal-01791310v1
Image document

Surgical motion analysis using discriminative interpretable patterns

Germain Forestier , François Petitjean , Pavel Senin , Fabien Despinoy , Arnaud Huaulmé
Artificial Intelligence in Medicine, 2018, 91, pp.3-11. ⟨10.1016/j.artmed.2018.08.002⟩
Journal articles hal-01880048v1
Image document

Evaluation of Contactless Human-Machine Interface for Robotic Surgical Training

Fabien Despinoy , Nabil Zemiti , Germain Forestier , Luis Alonso Sanchez Secades , Pierre Jannin
International Journal of Computer Assisted Radiology and Surgery, 2018, 13 (1), pp.13-24. ⟨10.1007/s11548-017-1666-6⟩
Journal articles lirmm-01577226v1
Image document

Surgical skills: Can learning curves be computed from recordings of surgical activities?

Germain Forestier , Laurent Riffaud , François Petitjean , Pierre-Louis Henaux , Pierre Jannin
International Journal of Computer Assisted Radiology and Surgery, 2018, 13 (5), pp.629-636. ⟨10.1007/s11548-018-1713-y⟩
Journal articles hal-01807121v1
Image document

Optimizing dynamic time warping’s window width for time series data mining applications

Hoang Anh Dau , Diego Furtado Silva , François Petitjean , Germain Forestier , Anthony Bagnall
Data Mining and Knowledge Discovery, 2018, 32 (4), pp.1074-1120. ⟨10.1007/s10618-018-0565-y⟩
Journal articles hal-02881677v1
Image document

Image analysis of immune cell patterns in the human mammary gland during the menstrual cycle refines lymphocytic lobulitis

Nadine S. Schaadt , Juan Carlos López Alfonso , Ralf Schönmeyer , Anne Grote , Germain Forestier
Breast Cancer Research and Treatment, 2017, 164 (2), pp.305 - 315. ⟨10.1007/s10549-017-4239-z⟩
Journal articles hal-01875860v1
Image document

Distinguishing surgical behavior by sequential pattern discovery

Arnaud Huaulmé , Sandrine Voros , Laurent Riffaud , Germain Forestier , Alexandre Moreau-Gaudry
Journal of Biomedical Informatics, 2017, 67, pp.34 - 41. ⟨10.1016/j.jbi.2017.02.001⟩
Journal articles hal-01470402v1
Image document

Automatic matching of surgeries to predict surgeons next actions

Germain Forestier , François Petitjean , Laurent Riffaud , Pierre Jannin
Artificial Intelligence in Medicine, 2017, 81, pp.3 - 11. ⟨10.1016/j.artmed.2017.03.007⟩
Journal articles hal-01499246v2
Image document

Finding discriminative and interpretable patterns in sequences of surgical activities

Germain Forestier , François Petitjean , Pavel Senin , Laurent Riffaud , Pierre-Louis Hénaux
Artificial Intelligence in Medicine, 2017, 82, pp.11-19. ⟨10.1016/j.artmed.2017.09.002⟩
Journal articles hal-01639834v1
Image document

Unsupervised Trajectory Segmentation for Surgical Gesture Recognition in Robotic Training

Fabien Despinoy , David Bouget , Germain Forestier , Cédric Penet , Nabil Zemiti
IEEE Transactions on Biomedical Engineering, 2016, 63 (6), pp.1280-1291. ⟨10.1109/TBME.2015.2493100⟩
Journal articles lirmm-01217023v1
Image document

In-silico insights on the prognostic potential of immune cell infiltration patterns in the breast lobular epithelium

Juan Carlos López Alfonso , Nadine S Schaadt , Ralf Schönmeyer , Nicolas Brieu , Germain Forestier
Scientific Reports, 2016, 6 (1), ⟨10.1038/srep33322⟩
Journal articles hal-01878620v1
Image document

Faster and more accurate classification of time series by exploiting a novel dynamic time warping averaging algorithm

François I Petitjean , Germain Forestier , Geoffrey I Webb , Ann E Nicholson , Yanping E Chen
Knowledge and Information Systems (KAIS), 2016, 47, pp.1 - 26. ⟨10.1007/s10115-015-0878-8⟩
Journal articles hal-01455034v1
Image document

Semi-supervised learning using multiple clusterings with limited labeled data

Germain Forestier , Cédric Wemmert
Information Sciences, 2016, 361–362, pp.48-65. ⟨10.1016/j.ins.2016.04.040⟩
Journal articles hal-01355189v2
Image document

Detection of lobular structures in normal breast tissue

Grégory Apou , Nadine S. Schaadt , Benoît Naegel , Germain Forestier , Ralf Schönmeyer
Computers in Biology and Medicine, 2016, 74, pp.91-102. ⟨10.1016/j.compbiomed.2016.05.004⟩
Journal articles hal-01321053v1
Image document

Algebraic graph transformations for formalizing ontology changes and evolving ontologies

Mariem Mahfoudh , Germain Forestier , Laurent Thiry , Michel Hassenforder
Knowledge-Based Systems, 2015, 73, pp.212-226. ⟨10.1016/j.knosys.2014.10.007⟩
Journal articles hal-01162612v2
Image document

Automatic phase prediction from low-level surgical activities

Germain Forestier , Laurent Riffaud , Pierre Jannin
International Journal of Computer Assisted Radiology and Surgery, 2015, 10 (6), pp.833-841. ⟨10.1007/s11548-015-1195-0⟩
Journal articles hal-01145855v2
Image document

OntoVIP: An ontology for the annotation of object models used for medical image simulation.

Bernard Gibaud , Germain Forestier , Hugues Benoit-Cattin , Frédéric Cervenansky , Patrick Clarysse
Journal of Biomedical Informatics, 2014, 52, pp.279-92. ⟨10.1016/j.jbi.2014.07.008⟩
Journal articles inserm-01062371v1
Image document

Domain-specific summarisation of Life-Science e-experiments from provenance traces

Alban Gaignard , Johan Montagnat , Bernard Gibaud , Germain Forestier , Tristan Glatard
Journal of Web Semantics, 2014, 29, pp.19-30. ⟨10.1016/j.websem.2014.07.001⟩
Journal articles hal-01027596v1
Image document

Non-Linear Temporal Scaling of Surgical Processes

Germain Forestier , Francois Petitjean , Laurent Riffaud , Pierre Jannin
Artificial Intelligence in Medicine, 2014, 62 (3), pp.143-152. ⟨10.1016/j.artmed.2014.10.007⟩
Journal articles hal-00862978v3
Image document

Comparison of optical sensors discrimination ability using spectral libraries

Germain Forestier , Jordi Inglada , Cédric Wemmert , Pierre Gancarski
International Journal of Remote Sensing, 2013, 34 (7), pp.2327 - 2349. ⟨10.1080/01431161.2012.744488⟩
Journal articles hal-01875856v1
Image document

Multi-site study of surgical practice in neurosurgery based on surgical process models.

Germain Forestier , Florent Lalys , Laurent Riffaud , D. Louis Collins , Jurgen Meixensberger
Journal of Biomedical Informatics, 2013, 46 (5), pp.822-9. ⟨10.1016/j.jbi.2013.06.006⟩
Journal articles inserm-00853846v1
Image document

Coastal image interpretation using background knowledge and semantics

Germain Forestier , Cédric Wemmert , Anne Puissant
Computers & Geosciences, 2013, 54, pp.88 - 96. ⟨10.1016/j.cageo.2012.11.023⟩
Journal articles hal-01875858v1
Image document

A virtual imaging platform for multi-modality medical image simulation.

Tristan Glatard , Carole Lartizien , Bernard Gibaud , Rafael Ferreira da Silva , Germain Forestier
IEEE Transactions on Medical Imaging, 2013, 32 (1), pp.110-8. ⟨10.1109/TMI.2012.2220154⟩
Journal articles inserm-00762497v1
Image document

Classification of surgical processes using dynamic time warping

Germain Forestier , Florent Lalys , Laurent Riffaud , Brivael Trelhu , Pierre Jannin
Journal of Biomedical Informatics, 2012, 45 (2), pp.255-264. ⟨10.1016/j.jbi.2011.11.002⟩
Journal articles inserm-00669624v2
Image document

Knowledge-based region labeling for remote sensing image interpretation

Germain Forestier , Anne Puissant , Cédric Wemmert , Pierre Gançarski
Computers, Environment and Urban Systems, 2012, 36 (5), pp.470 - 480. ⟨10.1016/j.compenvurbsys.2012.01.003⟩
Journal articles hal-01875854v1
Image document

Discovering Significant Evolution Patterns from Satelllite Image Time Series

François Petitjean , Florent Masseglia , Pierre Gancarski , Germain Forestier
International Journal of Neural Systems, 2011, 21 (6), pp.15. ⟨10.1142/S0129065711003024⟩
Journal articles lirmm-00639480v1
Image document

Supervised image segmentation using watershed transform, fuzzy classification and evolutionary computation

Sébastien Derivaux , Germain Forestier , Cédric Wemmert , Sébastien Lefèvre
Pattern Recognition Letters, 2010, 31 (15), pp.2364-2374. ⟨10.1016/j.patrec.2010.07.007⟩
Journal articles hal-00512749v2
Image document

Collaborative clustering with background knowledge

Germain Forestier , Pierre Gançarski , Cédric Wemmert
Data and Knowledge Engineering, 2010, 69 (2), pp.211 - 228. ⟨10.1016/j.datak.2009.10.004⟩
Journal articles hal-01875853v1
Image document

Multiresolution remote sensing image clustering

Cédric Wemmert , Anne Puissant , Germain Forestier , Pierre Gancarski
IEEE Geoscience and Remote Sensing Letters, 2009, 6 (3), pp.533-537. ⟨10.1109/LGRS.2009.2020825⟩
Journal articles halshs-00520632v1
Image document

Multisource Images Analysis Using Collaborative Clustering

Germain Forestier , Cédric Wemmert , Pierre Gancarski
EURASIP Journal on Advances in Signal Processing, 2008, 2008 (1), ⟨10.1155/2008/374095⟩
Journal articles hal-01878610v1
Image document

Apprentissage en Profondeur pour la Classification des Séries Temporelles à l'aide de Nouveaux Filtres de Convolution Créés Manuellement

Ali Ismail-Fawaz , Maxime Devanne , Jonathan Weber , Germain Forestier
ORASIS 2023, Laboratoire LIS, UMR 7020, May 2023, Carqueiranne, France
Conference papers hal-04219450v1
Image document

Comparaison des architectures d'apprentissage profond pour la détection des mutations du cancer du côlon

R Heckenauer , J Weber , C Wemmert , C Truntzer , V Derangère
ORASIS 2023 : journées francophones des jeunes chercheurs en vision par ordinateur,, May 2023, Carqueiranne, France
Conference papers hal-04185535v1
Image document

Comparison of deep learning architectures for colon cancer mutation detection

Robin Heckenauer , Jonathan Weber , Cédric Wemmert , Caroline Truntzer , Valentin Derangère
IEEE 36th International Symposium on Computer Based Medical Systems (CBMS 2023), Jun 2023, L'Aquila, Italy. ⟨10.1109/CBMS58004.2023.00244⟩
Conference papers hal-04168891v1
Image document

Une approche multi-grilles pour la génération automatique d'une carte de sentiers de randonnée à partir de données GPS

Olivier Schirm , Maxime Devanne , Jonathan Weber , Arnaud Lecus , Germain Forestier
ORASIS 2023, Laboratoire LIS, UMR 7020, May 2023, Carqueiranne, France
Conference papers hal-04219570v1
Image document

Exploring inference of a land use and land cover model trained on MultiSenGE dataset

Romain Wenger , Anne Puissant , Jonathan Weber , Lhassane Idoumghar , Germain Forestier
Joint Urban Remote Sensing Event (JURSE), May 2023, Heraklion, Greece. pp.1-4, ⟨10.1109/JURSE57346.2023.10144156⟩
Conference papers hal-04143069v1
Image document

Enhancing Time Series Classification with Self-Supervised Learning

Ali Ismail-Fawaz , Maxime Devanne , Jonathan Weber , Germain Forestier
International Conference on Agents and Artificial Intelligence (ICAART), Feb 2023, Lisbon, France. pp.40-47, ⟨10.5220/0011611300003393⟩
Conference papers hal-04143083v1
Image document

Algebraic Graph Transformations for Merging Ontologies

Mariem Mahfoudh , Laurent Thiry , Germain Forestier , Michel Hassenforder
International Conference on Model and Data Engineering (MEDI), Sep 2022, Larnaca, Cyprus. pp.154 - 168, ⟨10.1007/978-3-319-11587-0_16⟩
Conference papers hal-03811545v1

Deep Representation Learning for Cluster-Level Time Series Forecasting

Tsegamlak Debella , Bethelhem Shawel , Maxime Devanne , Jonathan Weber , Dereje Woldegebreal
International Conference on Time Series and Forecasting (ITISE), Jun 2022, Gran Canaria, Spain. pp.22, ⟨10.3390/engproc2022018022⟩
Conference papers hal-03800178v1
Image document

Deep Learning-Based Sentiment Analysis for Predicting Financial Movements

Hadhami Mejbri , Mariem Mahfoudh , Germain Forestier
International Conference on Knowledge Science, Engineering and Management (KSEM), Aug 2022, Singapore, Singapore. pp.586-596, ⟨10.1007/978-3-031-10986-7_47⟩
Conference papers hal-03800292v1
Image document

Smooth Perturbations for Time Series Adversarial Attacks

Gautier Pialla , Hassan Ismail Fawaz , Maxime Devanne , Jonathan Weber , Lhassane Idoumghar
Pacific-Asia Conference on Knowledge Discovery and Data Mining (PAKDD), May 2022, Chengdu, China. pp.485 - 496, ⟨10.1007/978-3-031-05933-9_38⟩
Conference papers hal-03800377v1
Image document

Deep Learning For Time Series Classification Using New Hand-Crafted Convolution Filters

Ali Ismail-Fawaz , Maxime Devanne , Jonathan Weber , Germain Forestier
IEEE International Conference on Big Data (Big Data), Dec 2022, Osaka, Japan. pp.972-981, ⟨10.1109/bigdata55660.2022.10020496⟩
Conference papers hal-04143093v1
Image document

Méthodes de classification du cancer du sein pour les microscopes à réalité augmentée

Robin Heckenauer , Jonthan Weber , Cédric Wemmert , Michel Hassenforder , Pierre-Alain Muller
RFIAP 2022 (Congrès Reconnaissance des Formes, Image, Apprentissage et Perception), Jul 2022, Vannes, France
Conference papers hal-03687423v1
Image document

A study of Knowledge Distillation in Fully Convolutional Network for Time Series Classification

Emel Ay , Maxime Devanne , Jonathan Weber , Germain Forestier
2022 International Joint Conference on Neural Networks (IJCNN), Jul 2022, Padua, France. pp.1-8, ⟨10.1109/IJCNN55064.2022.9892915⟩
Conference papers hal-03800230v1
Image document

Deep Clustering Methods Study Applied to Satellite Images Time Series

Baptiste Lafabregue , Anne Puissant , Jonathan Weber , Germain Forestier
IEEE International Geoscience and Remote Sensing Symposium (IGARSS), Jul 2022, Kuala Lumpur, Malaysia. pp.195-198, ⟨10.1109/igarss46834.2022.9884322⟩
Conference papers hal-03800248v1
Image document

Ensemble clustering for histopathological images segmentation using convolutional autoencoders

Ilias Rmouque , Jonathan Weber , Maxime Devanne , Germain Forestier , Cédric Wemmert
International Conference on Computer Vision Theory and Applications (VISAPP), Feb 2022, En ligne, France. pp.933-940, ⟨10.5220/0010835300003124⟩
Conference papers hal-03469780v1
Image document

Sentiment Analysis Based on Deep Learning in E-Commerce

Ameni Chamekh , Mariem Mahfoudh , Germain Forestier
International Conference on Knowledge Science, Engineering and Management (KSEM), Aug 2022, Singapore, Singapore. pp.498-507, ⟨10.1007/978-3-031-10986-7_40⟩
Conference papers hal-03800268v1
Image document

Incremental constrained clustering with application to remote sensing images time series

Baptiste Lafabregue , Pierre Gançarski , Jonathan Weber , Germain Forestier
IEEE International Conference on Data Mining Incr'Learn Workshops, Nov 2022, Orlando, United States. pp.814-823, ⟨10.1109/ICDMW58026.2022.00110⟩
Conference papers hal-03936924v1
Image document

Classification ensembliste de vidéos de mouvements de foule

Mounir Bendali-Braham , Jonathan Weber , Germain Forestier , Lhassane Idoumghar , Pierre-Alain Muller
ORASIS 2021, Centre National de la Recherche Scientifique [CNRS], Sep 2021, Saint Ferréol, France
Conference papers hal-03339627v1
Image document

Grad Centroid Activation Mapping for Convolutional Neural Networks

Baptiste Lafabregue , Jonathan Weber , Pierre Gançarski , Germain Forestier
IEEE International Conference on Tools with Artificial Intelligence (ICTAI), Nov 2021, Washington (virtual), United States. ⟨10.1109/ICTAI52525.2021.00033⟩
Conference papers hal-03451019v1
Image document

Ensemble classification of video-recorded crowd movements

Mounir Bendali-Braham , Jonathan Weber , Germain Forestier , Lhassane Idoumghar , Pierre-Alain Muller
International Symposium on Image and Signal Processing and Analysis (ISPA), Sep 2021, Zagreb, Croatia. pp.152-158, ⟨10.1109/ISPA52656.2021.9552129⟩
Conference papers hal-03800450v1
Image document

Auto-encodeur multi-tâches pour le calcul de moyennes de séries temporelles

Tsegamlak Terefe , Maxime Devanne , Jonathan Weber , Dereje Hailemariam , Germain Forestier
Atelier Apprentissage profond: Théorie et Applications (APTA), Journées Francophones Extraction et Gestion des Connaissances (EGC), Jan 2021, Montpellier, France
Conference papers hal-03604169v1
Image document

Segmentation non-supervisée d'images histopathologiques à l'aide d'auto-encodeurs et d'ensemble clustering

Ilias Rmouque , Maxime Devanne , Jonathan Weber , Germain Forestier , Cédric Wemmert
Atelier Apprentissage profond: Théorie et Applications (APTA), Journées Francophones Extraction et Gestion des Connaissances (EGC), Jan 2021, Montpellier, France
Conference papers hal-03604158v1
Image document

Détection en temps réel des glomérules en pathologie rénale

Robin Heckenauer , Jonathan Weber , Cédric Wemmert , Friedrich Feuerhake , Michel Hassenforder
ORASIS 2021, Centre National de la Recherche Scientifique [CNRS], Sep 2021, Saint Ferréol, France
Conference papers hal-03339642v1
Image document

Neural Architecture Search for Time Series Classification

Hojjat Rakhshani , Hassan Ismael Fawaz , Lhassane Idoumghar , Germain Forestier , Julien Lepagnot
International Joint Conference on Neural Networks (IJCNN), Jul 2020, Glasgow, United Kingdom. ⟨10.1109/IJCNN48605.2020.9206721⟩
Conference papers hal-03668466v1
Image document

Knowledge-Based Categorization of Scientific Articles for Similarity Predictions

Nolwenn Bernard , Jonathan Weber , Germain Forestier , Michel Hassenforder , Bastien Latard
International Conference on Theory and Practice of Digital Libraries (TPDL), Aug 2020, Lyon, France. pp.147-160, ⟨10.1007/978-3-030-54956-5⟩
Conference papers hal-03716931v1
Image document

Time Series Averaging Using Multi-Tasking Autoencoder

Tsegamlak Terefe , Maxime Devanne , Jonathan Weber , Dereje Hailemariam , Germain Forestier
2020 IEEE 32nd International Conference on Tools with Artificial Intelligence (ICTAI), Nov 2020, Baltimore, MD, United States. pp.1065-1072, ⟨10.1109/ictai50040.2020.00163⟩
Conference papers hal-03536043v1
Image document

Revealing Long-term Physiological Trajectories Of Grasslands From Legacy B&W Aerial Photographs

Quentin Poterek , Pierre-Alexis Herrault , Germain Forestier , Dominique Schwartz
XXIVth ISPRS congress, Commission III, Aug 2020, En ligne, France. pp.549-557, ⟨10.5194/isprs-annals-V-3-2020-549-2020⟩
Conference papers hal-03716929v1
Image document

Real-Time Detection of Glomeruli in Renal Pathology

Robin Heckenauer , Jonathan Weber , Cedric Wemmert , Friedrich Feuerhake , Michel Hassenforder
2020 IEEE 33rd International Symposium on Computer-Based Medical Systems (CBMS), Jul 2020, Rochester (on line), United States. pp.350-355, ⟨10.1109/cbms49503.2020.00072⟩
Conference papers hal-03353271v1
Image document

Automated Machine Learning for Information Retrieval in Scientific Articles

Hojjat Rakhshani , Bastien Latard , Mathieu Brevilliers , Jonathan Weber , Julien Lepagnot
IEEE Congress on Evolutionary Computation (CEC), Jul 2020, Glasgow, United Kingdom. ⟨10.1109/CEC48606.2020.9185893⟩
Conference papers hal-03714819v1
Image document

Adversarial Attacks on Deep Neural Networks for Time Series Classification

Hassan Ismail Fawaz , Germain Forestier , Jonathan Weber , Lhassane Idoumghar , Pierre-Alain Muller
International Joint Conference on Neural Networks (IJCNN), Jul 2019, Budapest, Hungary. pp.1-8, ⟨10.1109/ijcnn.2019.8851936⟩
Conference papers hal-03800533v1
Image document

Deep constrained clustering applied to satellite image time series

Baptiste Lafabregue , Jonathan Weber , Pierre Gançarski , Germain Forestier
ECML/PKDD Workshop on Machine Learning for Earth Observation Data (MACLEAN), Sep 2019, Würzburg, Germany
Conference papers hal-02326219v1
Image document

Automatic Alignment of Surgical Videos Using Kinematic Data

Hassan Ismail Fawaz , Germain Forestier , Jonathan Weber , François Petitjean , Lhassane Idoumghar
International Conference on Artificial Intelligence in Medicine (AIME), Jun 2019, Poznan, Poland. pp.104 - 113, ⟨10.1007/978-3-030-21642-9_14⟩
Conference papers hal-03800512v1
Image document

Transfer learning for the classification of video-recorded crowd movements

Mounir Bendali-Braham , Jonathan Weber , Germain Forestier , Lhassane Idoumghar , Pierre-Alain Muller
International Symposium on Image and Signal Processing and Analysis (ISPA), Sep 2019, Dubrovnik, Croatia. pp.271-276, ⟨10.1109/ISPA.2019.8868704⟩
Conference papers hal-03205966v1
Image document

Strategies for Training Stain Invariant CNNS

Thomas Lampert , Odyssée Merveille , Jessica Schmitz , Germain Forestier , Friedrich Feuerhake
2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI), Apr 2019, Venise, Italy. pp.905-909, ⟨10.1109/ISBI.2019.8759266⟩
Conference papers hal-02283639v1
Image document

Deep Neural Network Ensembles for Time Series Classification

Hassan Ismail Fawaz , Germain Forestier , Jonathan Weber , Lhassane Idoumghar , Pierre-Alain Muller
International Joint Conference on Neural Networks (IJCNN) 2019, Jul 2019, Budapest, Hungary. pp.1-6, ⟨10.1109/ijcnn.2019.8852316⟩
Conference papers hal-03800519v1
Image document

Data augmentation using synthetic data for time series classification with deep residual networks

Hassan Ismail Fawaz , Germain Forestier , Jonathan Weber , Lhassane Idoumghar , Pierre-Alain Muller
3nd ECML/PKDD Workshop on Advanced Analytics and Learning on Temporal Data, Sep 2018, Dublin, Ireland. ⟨10.48550/arXiv.1808.02455⟩
Conference papers hal-04159550v1
Image document

Data augmentation using synthetic data for time series classification with deep residual networks

Hassan Ismail Fawaz , Germain Forestier , Jonathan Weber , Lhassane Idoumghar , Pierre-Alain Muller
3nd ECML/PKDD Workshop on Advanced Analytics and Learning on Temporal Data, Sep 2018, Dublin, Ireland. ⟨10.48550/arXiv.1808.02455⟩
Conference papers hal-04158172v1
Image document

Transfer learning for time series classification

Hassan Ismail Fawaz , Germain Forestier , Jonathan Weber , Lhassane Idoumghar , Pierre-Alain Muller
IEEE International Conference on Big Data (Big Data), Dec 2018, Seattle, United States. pp.1367-1376, ⟨10.1109/bigdata.2018.8621990⟩
Conference papers hal-03800559v1
Image document

Evaluating Surgical Skills from Kinematic Data Using Convolutional Neural Networks

Hassan Ismail Fawaz , Germain Forestier , Jonathan Weber , Lhassane Idoumghar , Pierre-Alain Muller
Medical Image Computing and Computer Assisted Intervention (MICCAI), Sep 2018, Granada, Spain. pp.214 - 221, ⟨10.1007/978-3-030-00937-3_25⟩
Conference papers hal-03800569v1
Image document

Efficient search of the best warping window for Dynamic Time Warping

Chang Wei Tan , Matthieu Herrmann , Germain Forestier , Geoffrey Webb , François Petitjean
SIAM International Conference on Data Mining (SDM), May 2018, San Diego, United States. pp.225-233, ⟨10.1137/1.9781611975321.26⟩
Conference papers hal-03800575v1
Image document

Judicious Setting of Dynamic Time Warping's Window Width Allows More Accurate Classification of Time Series

Hoang Anh Dau , Diego Furtado Silva , Francois Petitjean , Germain Forestier , Anthony Bagnall
IEEE International Conference on Big Data (Big Data), Dec 2017, Boston, France. pp.917-922, ⟨10.1109/BigData.2017.8258009⟩
Conference papers hal-03807671v1
Image document

Generating Synthetic Time Series to Augment Sparse Datasets

Germain Forestier , Francois Petitjean , Hoang Anh Dau , Geoffrey Webb , Eamonn Keogh
2017 IEEE International Conference on Data Mining (ICDM), Nov 2017, New Orleans, France. pp.865-870, ⟨10.1109/icdm.2017.106⟩
Conference papers hal-03807627v1
Image document

Using Semantic Relations between Keywords to Categorize Articles from Scientific Literature

Bastien Latard , Jonathan Weber , Germain Forestier , Michel Hassenforder
IEEE International Conference on Tools with Artificial Intelligence (ICTAI), Nov 2017, Boston, France. pp.260-264, ⟨10.1109/ictai.2017.00049⟩
Conference papers hal-03807663v1
Image document

Detection of glomeruli in renal pathology by mutual comparison of multiple staining modalities

M. Temerinac-Ott , Germain Forestier , J. Schmitz , M. Hermsen , J.H. Brasen
2017 10th International Symposium on Image and Signal Processing and Analysis (ISPA), Sep 2017, Ljubljana, France. pp.19-24, ⟨10.1109/ispa.2017.8073562⟩
Conference papers hal-03807632v1
Image document

Discovering Discriminative and Interpretable Patterns for Surgical Motion Analysis

G. Forestier , F. Petitjean , P. Senin , Fabien Despinoy , Pierre Jannin
International Conference on Artificial Intelligence in Medicine (AIME), Jun 2017, Vienna, Austria. pp.136-145, ⟨10.1007/978-3-319-59758-4_15⟩
Conference papers hal-01618931v1
Image document

Towards a Semantic Search Engine for Scientific Articles

Bastien Latard , Jonathan Weber , Germain Forestier , Michel Hassenforder
International Conference on Theory and Practice of Digital Libraries (TPDL), Sep 2017, Thessaloniki, Greece. pp.608 - 611, ⟨10.1007/978-3-319-67008-9_54⟩
Conference papers hal-03807659v1
Image document

Using Glocal Event Alignment for Comparing Sequences of Significantly Different Lengths

Vinh-Trung Luu , Mathis Ripken , Germain Forestier , Frédéric Fondement , Pierre-Alain Muller
Machine Learning and Data Mining in Pattern Recognition (MLDM), Jul 2016, New York City, United States. pp.58-72, ⟨10.1007/978-3-319-41920-6_5⟩
Conference papers hal-03807693v1
Image document

Web usage prediction and recommendation using web session clustering

Vinh-Trung Luu , Germain Forestier , Mathis Ripken , Frederic Fondement , Pierre-Alain Muller
International Conference on Digital Information Management (ICDIM), Sep 2016, Porto, France. pp.107-113, ⟨10.1109/icdim.2016.7829779⟩
Conference papers hal-03807679v1
Image document

A Benchmark for Ontologies Merging Assessment

Mariem Mahfoudh , Germain Forestier , Michel Hassenforder
International Conference on Knowledge Science, Engineering and Management (KSEM), Oct 2016, Passau, Germany. pp.555 - 566, ⟨10.1007/978-3-319-47650-6_44⟩
Conference papers hal-03807686v1
Image document

Optimal Sub-Sequence Matching for the Automatic Prediction of Surgical Tasks

Germain Forestier , Francois Petitjean , Laurent Riffaud , Pierre Jannin
International Conference on Artificial Intelligence in Medicine (AIME), Jun 2015, Pavie, Italy. pp.123-132, ⟨10.1007/978-3-319-19551-3_15⟩
Conference papers hal-01262692v1
Image document

Synthesizing whole slide images

Gregory Apou , Friedrich Feuerhake , Germain Forestier , Benoit Naegel , Cedric Wemmert
2015 9th International Symposium on Image and Signal Processing and Analysis (ISPA), Sep 2015, Zagreb, France. pp.154-159, ⟨10.1109/ispa.2015.7306050⟩
Conference papers hal-03811521v1
Image document

Dynamic Time Warping Averaging of Time Series allows Faster and more Accurate Classification

Francois Petitjean , Germain Forestier , Geoffrey Webb , Ann Nicholson , Yanping Chen
2014 IEEE International Conference on Data Mining (ICDM), Dec 2014, Shenzhen, China. pp.470-479, ⟨10.1109/ICDM.2014.27⟩
Conference papers hal-03811535v1

Efficient Region-based Classification for Whole Slide Images

Grégory Apou , Benoît Naegel , Germain Forestier , Friedrich Feuerhake , Cédric Wemmert
International Joint Conference on Computer Vision, Imaging and Computer Graphics, 5-8 january 2017, Lisbon, Portugal, Jan 2014, Lisbonne, Portugal. pp.239-256, ⟨10.1007/978-3-319-25117-2_15⟩
Conference papers hal-03797892v1
Image document

Learning fuzzy rules to characterize objects of interest from remote sensing images

B. Belarte , C. Wemmert , G. Forestier , M. Grizonnet , C. Weber
IEEE Geoscience and Remote Sensing Symposium (IGARSS), Jul 2013, Melbourne, France. ⟨10.1109/IGARSS.2013.6723453⟩
Conference papers hal-01888500v1
Image document

Stain unmixing in brightfield multiplexed immunohistochemistry

Cedric Wemmert , Juliane M Kruger , Germain Forestier , Ludovic Sternberger , Friedrich Feuerhake
IEEE International Conference on Image Processing (ICIP), Sep 2013, Melbourne, Australia. pp.1125-1129, ⟨10.1109/icip.2013.6738232⟩
Conference papers hal-03825906v1
Image document

Adaptation consistante d'ontologie à l'aide des grammaires de graphes

Mariem Mahfoudh , Laurent Thiry , Germain Forestier , Michel Hassenforder
IC - 24èmes Journées francophones d'Ingénierie des Connaissances, Jul 2013, Lille, France
Conference papers hal-01104002v1
Image document

Consistent Ontologies Evolution Using Graph Grammars

Mariem Mahfoudh , Germain Forestier , Laurent Thiry , Michel Hassenforder
International Conference on Knowledge Science, Engineering and Management (KSEM), Aug 2013, Dalian, China. pp.64 - 75, ⟨10.1007/978-3-642-39787-5_6⟩
Conference papers hal-03825909v1
Image document

Big Metamodels are Evil

Frédéric Fondement , Pierre-Alain Muller , Laurent Thiry , Brice Wittmann , Germain Forestier
ACM/IEEE International Conference on Model Driven Engineering Languages and Systems (MODELS), Sep 2013, Miami, United States. pp.138-153, ⟨10.1007/978-3-642-41533-3_9⟩
Conference papers hal-03825914v1
Image document

Clustering de séquences d'activités pour l'étude de procédures neurochirurgicales

Germain Forestier , Florent Lalys , Laurent Riffaud , Brivael Trelhu , Pierre Jannin
12e Conférence Internationale Francophone sur l'Extraction et la Gestion des Connaissances, Feb 2012, Bordeaux, France. pp.489-494
Conference papers inserm-00670007v1
Image document

Multi-modality image simulation with the Virtual Imaging Platform: Illustration on cardiac echography and MRI

T. Glatard , A. Marion , H. Benoit-Cattin , S. Camarasu-Pop , P. Clarysse
IEEE International Symposium on Biomedical Imaging (ISBI), May 2012, Barcelona, Spain. pp.98-101, ⟨10.1109/ISBI.2012.6235493⟩
Conference papers hal-00830243v1

Design of an ontology for the annotation of object models used for medical image simulation

B. Gibaud , G. Forestier , B. Benoit-Cattin , F. Cervenansky , P. Clarysse
Nouvelles méthodologies en imagerie du vivant, Dec 2012, Lyon, France
Conference papers hal-00829556v1

OntoVIP: an ontology for the annotation of object models used for medical image simulation

B. Gibaud , G. Forestier , H. Benoit-Cattin , F. Cervenansky , P. Clarysse
IEEE International Conference on Healthcare Informatics, Imaging and Systems Biology (HISB), Sep 2012, La Jolla, United States. pp.110, ⟨10.1109/HISB.2012.35⟩
Conference papers hal-00830912v1
Image document

Multi-modality medical image simulation of biological models with the Virtual Imaging Platform (VIP)

Adrien Marion , Germain Forestier , Hugues Benoit-Cattin , Sorina Camarasu-Pop , Patrick Clarysse
International Symposium on Computer-Based Medical Systems (CBMS), Jun 2011, Bristol, United Kingdom. pp.1-6, ⟨10.1109/cbms.2011.5999141⟩
Conference papers hal-03813315v1
Image document

Assessment of surgical skills using Surgical Processes and Dynamic Time Warping

Germain Forestier , Florent Lalys , Laurent Riffaud , Brivael Trelhu , Pierre Jannin
M2CAI 2011 (MICCAI workshop) - Modelling and Monitoring of Computer-Assisted Intervention, Sep 2011, Toronto, Canada
Conference papers inserm-00617017v1
Image document

Sharing object models for multi-modality medical image simulation: a semantic approach

G. Forestier , A. Marion , H. Benoit-Cattin , P. Clarysse , D. Friboulet
International Symposium on Computer-Based Medical Systems (CBMS), 2011, Bristol, UK, United Kingdom. pp.1-6, ⟨10.1109/CBMS.2011.5999167⟩
Conference papers hal-01922169v1
Image document

Background Knowledge Integration in Clustering Using Purity Indexes

Germain Forestier , Cédric Wemmert , Pierre Gançarski
International Conference on Knowledge Science, Engineering and Management (KSEM)., Sep 2010, Belfast, United Kingdom. pp.28 - 38, ⟨10.1007/978-3-642-15280-1_6⟩
Conference papers hal-03813327v1
Image document

Analysing Satellite Image Time Series by means of Pattern Mining

François Petitjean , Pierre Gançarski , Florent Masseglia , Germain Forestier
IDEAL 2010 - 11th International Conference on Intelligent Data Engineering and Automated Learning, Sep 2010, Paisley, United Kingdom. pp.45-52, ⟨10.1007/978-3-642-15381-5_6⟩
Conference papers hal-03813248v1
Image document

Towards conflict resolution in collaborative clustering

Germain Forestier , Cedric Wemmert , Pierre Gancarski
IEEE International Conference Intelligent Systems (IS), Jul 2010, London, United Kingdom. pp.361-366, ⟨10.1109/is.2010.5548343⟩
Conference papers hal-03813345v1
Image document

Mining spectral libraries to study sensors' discrimination ability

Germain Forestier , Jordi Inglada , Cédric Wemmert , Pierre Gancarski
SPIE Europe Remote Sensing, Aug 2009, Berlin, Germany. ⟨10.1117/12.830392⟩
Conference papers hal-01887503v1
Image document

On Combining Unsupervised Classification and Ontology Knowledge

Germain Forestier , Cédric Wemmert , Pierre Gancarski
IEEE International Geoscience and Remote Sensing Symposium (IGARSS), Jul 2008, Boston, United States. ⟨10.1109/igarss.2008.4779741⟩
Conference papers hal-01887351v1
Image document

Extraction de détecteurs d'objets urbains à partir d'une ontologie

Sébastien Derivaux , Germain Forestier , Cédric Wemmert , Sébastien Lefèvre
Journées Francophones Extraction et Gestion des Connaissances (EGC) Atelier Extraction de COnnaissance à partir d'Images (ECOI),, 2008, Sophia Antipolis, France
Conference papers hal-00516099v1
Image document

Ontology-based Object Recognition for Remote Sensing Image Interpretation

Nicolas Durand , Sébastien Derivaux , Germain Forestier , Cédric Wemmert , Pierre Gancarski
IEEE International Conference on Tools with Artificial Intelligence (ICTAI), Oct 2007, Patras, Greece. pp.472-479, ⟨10.1109/ICTAI.2007.111⟩
Conference papers hal-01463170v2
Image document

Deep Learning for Histopathological Image Analysis

Cédric Wemmert , Jonathan Weber , Friedrich Feuerhake , Germain Forestier
Mourad Elloumi. Deep Learning for Biomedical Data Analysis. Techniques, Approaches, and Applications, Springer, pp.153-169, 2021, 978-3-030-71675-2. ⟨10.1007/978-3-030-71676-9_7⟩
Book sections hal-03321639v1
Image document

Constrained Clustering: Current and New Trends

Pierre Gançarski , Thi-Bich-Hanh Dao , Bruno Crémilleux , Germain Forestier , Thomas Lampert
Pierre Marquis, Odile Papini, Henri Prade. A Guided Tour of AI Research, 2, Springer, 2020
Book sections hal-02548212v1

Constrained clustering: current and new trends

Pierre Gançarski , Thi-Bich-Hanh Dao , Bruno Crémilleux , Germain Forestier , Thomas Lampert
A guided tour of artificial intelligence research, 2, Springer Verlag, pp.447-484, 2020, 978-3-030-06167-8. ⟨10.1007/978-3-030-06167-8_14⟩
Book sections hal-04234020v1