Gautier SARAH

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Publications

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Genome-wide association analysis of flowering date in a collection of cultivated olive tree

Laila Aqbouch , Omar Abou-Saaid , Gautier Sarah , Lison Zunino , Vincent Segura et al.

Horticulture research, 2025, 12 (1), pp.uhae265. ⟨10.1093/hr/uhae265/7786770⟩

Article dans une revue hal-04870626v2
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QTL mapping and candidate gene identification of the full flowering date trait in olive trees (Olea Europaea L.)

Othmane Lamoumni , Ahmed El Bakkali , Omar Abou-Saaid , Philippe Cubry , Lorenzo Leon et al.

BMC Plant Biology, 2025, 25, pp.1768. ⟨10.1186/s12870-025-07171-9⟩

Article dans une revue hal-05472731v1
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Time-resolved transcriptomics of single Vitis vinifera fruits: membrane transporters as switches of the double sigmoidal growth

Stefania Savoi , Mengyao Shi , Gautier Sarah , Audrey Weber , Laurent Torregrosa et al.

Journal of Experimental Botany, In press, pp.erae502. ⟨10.1093/jxb/erae502⟩

Article dans une revue hal-04739970v2
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Vitis rotundifolia Genes Introgressed with RUN1 and RPV1: Poor Recombination and Impact on V. vinifera Berry Transcriptome

Mengyao Shi , Stefania Savoi , Gautier Sarah , Alexandre Soriano , Audrey Weber et al.

Plants, 2024, 13 (15), pp.2095. ⟨10.3390/plants13152095⟩

Article dans une revue hal-04673480v1

Characterization of an olive population relevant for genome-wide association studies on flowering time

Laila Aqbouch , Lison Zunino , Omar Abou-Saaid , Gautier Sarah , Pierre Mournet et al.

Acta Horticulturae, 2024, 1412, pp.129-136. ⟨10.17660/ActaHortic.2024.1412.21⟩

Article dans une revue hal-04870728v1
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Target enrichment sequencing coupled with GWAS identifies MdPRX10 as a candidate gene in the control of budbreak in apple

Amy E. Watson , Baptiste Guitton , Alexandre Soriano , Ronan Rivallan , Hélène Vignes et al.

Frontiers in Plant Science, 2024, 15, pp.1352757. ⟨10.3389/fpls.2024.1352757⟩

Article dans une revue hal-04519907v1
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Genomic evidence of genuine wild versus admixed olive populations evolving in the same natural environments in western Mediterranean Basin

Lison Zunino , Philippe Cubry , Gautier Sarah , Pierre Mournet , Ahmed El Bakkali et al.

PLoS ONE, 2024, 19, pp.e0295043. ⟨10.1371/journal.pone.0295043⟩

Article dans une revue hal-04519623v1
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Dual domestications and origin of traits in grapevine evolution

Yang Dong , Shengchang Duan , Qiuju Xia , Zhenchang Liang , Xiao Dong et al.

Science, 2023, 379 (6635), pp.892-901. ⟨10.1126/science.add8655⟩

Article dans une revue hal-04159992v1

High quality phased assembly of grape genome offer new opportunities in chimera detection

Victoria Sichel , Gautier Sarah , Nabil Girollet , Valérie Laucou , Catherine Roux et al.

Vitis, 2023, 62 (Special Issue), pp.99-102. ⟨10.5073/vitis.2023.62.special-issue.99-102⟩

Article dans une revue hal-04188641v1
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Chimeras in Merlot grapevine revealed by phased assembly

V. Sichel , G. Sarah , Nabil Girollet , Valérie Laucou , C. Roux et al.

BMC Genomics, 2023, 24 (1), pp.396. ⟨10.1186/s12864-023-09453-8⟩

Article dans une revue hal-04187937v1
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A chromosome-level, haplotype-phased Vanilla planifolia genome highlights the challenge of partial endoreplication for accurate whole-genome assembly

Quentin Piet , Gaetan Droc , William Marande , Gautier Sarah , Stéphanie Bocs et al.

Plant Communications, 2022, 3 (5), pp.100330. ⟨10.1016/j.xplc.2022.100330⟩

Article dans une revue hal-03678239v1
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RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes

Clément Agret , Annie Chateau , Gaetan Droc , Gautier Sarah , Manuel Ruiz et al.

Journal of Open Source Software, 2022, 7 (80), pp.4363. ⟨10.21105/joss.04363⟩

Article dans une revue lirmm-03920648v1
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The Identification of Small RNAs Differentially Expressed in Apple Buds Reveals a Potential Role of the Mir159-MYB Regulatory Module during Dormancy

Julio Garighan , Etienne Dvorak , Joan Estevan , Karine Loridon , Bruno Huettel et al.

Plants, 2021, 10 (12), ⟨10.3390/plants10122665⟩

Article dans une revue hal-03602721v1
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Genome ancestry mosaics reveal multiple and cryptic contributors to cultivated banana

Guillaume Martin , Céline Cardi , Gautier Sarah , Sébastien Ricci , Christophe Jenny et al.

The Plant Journal, 2020, 102 (5), pp.1008-1025. ⟨10.1111/tpj.14683⟩

Article dans une revue hal-02628306v1
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Pervasive hybridizations in the history of wheat relatives

Sylvain Glémin , Celine Scornavacca , Jacques Dainat , Concetta Burgarella , Veronique Viader et al.

Science Advances , 2019, 5 (5), pp.eaav9188. ⟨10.1126/sciadv.aav9188⟩

Article dans une revue hal-02144799v1
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Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication

Muriel Gros-Balthazard , Guillaume Besnard , G Sarah , Yan Holtz , Julie Leclercq et al.

The Plant Journal, 2019, 100 (1), pp.143-157. ⟨10.1111/tpj.14435⟩

Article dans une revue hal-02178869v1
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Transcriptome data from three endemic Myrtaceae species from New Caledonia displaying contrasting responses to myrtle rust (Austropuccinia psidii)

Julia Soewarto , Chantal Hamelin , Stéphanie Bocs , Pierre Mournet , Hélène Vignes et al.

Data in Brief, 2019, 22, pp.794 - 811. ⟨10.1016/j.dib.2018.12.080⟩

Article dans une revue (data paper) hal-02618244v1

Evolutionary transcriptomics reveals the origins of olives and the genomic changes associated with their domestication

Muriel Gros‐balthazard , Guillaume Besnard , Gautier Sarah , Yan Holtz , Julie Leclercq et al.

The Plant Journal, 2019, 100 (1), pp.143-157. ⟨10.1111/tpj.14435⟩

Article dans une revue hal-02988768v1

A novel high-density grapevine (Vitis vinifera L.) integrated linkage map using GBS in a half-diallel population

Javier Tello , Catherine Roux , Hajar Chouiki Alilou , Valerie Laucou , Gautier Sarah et al.

TAG Theoretical and Applied Genetics, 2019, 132, pp.2237-2252. ⟨10.1007/s00122-019-03351-y⟩

Article dans une revue hal-02628952v1
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A large set of 26 new reference transcriptomes dedicated to comparative population genomics in crops and wild relatives

Gautier Sarah , Félix Homa , Stéphanie Pointet , Sandy Contreras , François Sabot et al.

Molecular Ecology Resources, 2017, 17 (3), pp.565-580. ⟨10.1111/1755-0998.12587⟩

Article dans une revue hal-01930391v1
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Domestication rewired gene expression and nucleotide diversity patterns in tomato

Christopher Sauvage , Andrea Rau , Charlotte Aichholz , Joel Chadoeuf , Gautier Sarah et al.

The Plant Journal, 2017, 91 (4), pp.631-645. ⟨10.1111/tpj.13592⟩

Article dans une revue hal-01594937v1
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Temperature desynchronizes sugar and organic acid metabolism in ripening grapevine fruits and remodels their transcriptome

Markus Rienth , Laurent Torregrosa , Gautier Sarah , Morgane Ardisson , Jean Marc Brillouet et al.

BMC Plant Biology, 2016, 16 (1), 23 p. ⟨10.1186/s12870-016-0850-0⟩

Article dans une revue hal-01353542v1
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Gigwa—Genotype investigator for genome- wide analyses

Guilhem Sempéré , Florian Philippe , Alexis Dereeper , Manuel Ruiz , Gautier Sarah et al.

GigaScience, 2016, 5 (1), pp.1-9. ⟨10.1186/s13742-016-0131-8⟩

Article dans une revue hal-01411506v1
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The South Green portal: a comprehensive resource for tropical and Mediterranean crop genomics

Valentin Guignon , Yann Hueber , Mathieu Rouard , Stéphanie Bocs , David Couvin et al.

Current Plant Biology, 2016, 7-8, pp.6-9. ⟨10.1016/j.cpb.2016.12.002⟩

Article dans une revue hal-02631148v1
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La diversité génétique des plantes cultivées à l'heure de l'informatique génétique à haut débit: génomique comparative de la domestication

Jacques David , Sylvain Glémin , Gautier Sarah , Benoit Nabholz , Francois Sabot et al.

Sélectionneur Français, 2016, 67, pp.3-13

Article dans une revue (article de synthèse) hal-01607736v1
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PHIV-RootCell: a supervised image analysis tool for rice root anatomical parameter quantification

Marc Lartaud , Christophe Perin , Brigitte Courtois , Emilie Thomas , Sophia Henry et al.

Frontiers in Plant Science, 2015, 5, pp.1-7. ⟨10.3389/fpls.2014.00790⟩

Article dans une revue hal-02637835v1
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SNiPlay3: a web-based application for exploration and large scale analyses of genomic variations

Alexis Dereeper , Felix Homa , Gwendoline Andres , Guilhem Sempere , Gautier Sarah et al.

Nucleic Acids Research, 2015, 43 (W1), pp.W295-W300. ⟨10.1093/nar/gkv351⟩

Article dans une revue hal-01279141v1

Genotyping by sequencing transcriptomes in an evolutionary pre-breeding durum wheat population

Jacques David , Yan Holtz , Vincent Ranwez , Sylvain Santoni , Gautier Sarah et al.

Molecular Breeding, 2014, 34 (4), pp.1531-1548. ⟨10.1007/s11032-014-0179-z⟩

Article dans une revue hal-01123443v1
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Transcriptome population genomics reveals severe bottleneck and domestication cost in the African rice ( Oryza glaberrima )

Benoit Nabholz , Gautier Sarah , François Sabot , Manuel Ruiz , Hélène Adam et al.

Molecular Ecology, 2014, 23 (9), pp.2210 - 2227. ⟨10.1111/mec.12738⟩

Article dans une revue hal-01919691v1
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Comparative Transcriptome Analysis of Three Oil Palm Fruit and Seed Tissues That Differ in Oil Content and Fatty Acid Composition

Stéphane Dussert , Chloe Guerin , Mariette Andersson , Thierry Joet , Timothy J. Tranbarger et al.

Plant Physiology, 2013, 162 (3), pp.1337 - 1358. ⟨10.1104/pp.113.220525⟩

Article dans une revue hal-01268069v1

Molecular insights into the DELLA-SPL-MIR156 regulatory network controlling floral transition in apple (Malus domestica)

Mohamad Al Bolbol , Virginia Fernandez , Kwanho Jeong , Joan Estevan , Samer El Khoury et al.

4th edition of the INUPRAG Symposium, Oct 2025, Montpellier, France

Communication dans un congrès hal-05440136v1
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Identifying physiological and genetic bases of grapevine adaptation to climate change with maintained quality: Genome diversity as a driver for phenotypic plasticity (‘PlastiVigne’ project)

Dominique This , Roberto Bacilieri , Eva Coindre , Olivia Di Valentin , Baptiste Pierre et al.

Open GPB 2024 - Open Conference on Grapevine Physiology and Biotechnology, Jul 2024, Logrono La Riora, Spain. ⟨10.58233/KIpkvVol⟩

Communication dans un congrès hal-04677493v1

Chimeras in Merlot grapevine revealed by phased assembly

V. Sichel , G. Sarah , Nabil Girollet , Valérie Laucou , C. Roux et al.

PPAG-Australia, International Plant and Animal Genome Conference, IPPN, Sep 2023, Westin Perth, Australia

Communication dans un congrès hal-04569823v1

Intravarietal diversity: an opportunity for climate change adaptation

Victoria Sichel , Gautier Sarah , Loïc Le Cunff , Patrice This , Thierry Lacombe et al.

22. GiESCO International Meeting, Giesco, Jul 2023, Ithaca, United States

Communication dans un congrès hal-04188529v1

The Chenin clone project: Current progress towards establishing a scientific base for intravarietal diversity.

Patrice This , Valérie Laucou , Catherine Roux , Gautier Sarah , Thierry Lacombe et al.

Chenin Blanc International Congress, Chenin blanc association, Nov 2022, Stellenbosch, South Africa

Communication dans un congrès hal-04188511v1
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A novel high-density grapevine integrated linkage map using GBS in a multi-parental population: preliminary results

Javier Tello Moro , Catherine Roux , Valerie Laucou , Gautier Sarah , Timothée Flutre et al.

12. International Conference on Grapevine Breeding and Genetics, Jul 2018, Bordeaux, France

Communication dans un congrès hal-01857671v1

Integrating novel genotyping and phenotyping technologies for grape genetics. International Congress on Grapevine and Wine Sciences

Javier Tello Moro , Catherine Roux , Valerie Laucou , Gautier Sarah , Luc Bidel et al.

International Congress on Grapevine and Wine Sciences, Nov 2018, Logrono, Spain. 242 p

Communication dans un congrès hal-02736417v1

Low growth temperatures uncouple sugar accumulation from malic acid degradation in ripenning microvine berries

Markus Rienth , Laurent Torregrosa , Gautier Sarah , Morgane Ardisson , Gilbert Lopez et al.

InterVitis InterFructa 2016, Nov 2016, Stuttgart, Germany

Communication dans un congrès hal-02793122v1

Phylogenomics unravels the complex reticulated history and shifts in mating systems in wheat relatives (Aegilops/Triticum genus)

Celine Scornavacca , Sylvain Glémin , Jacques Dainat , Concetta Burgarella , Gautier Sarah et al.

ALPHY 2016: Belgium-French meeting on Bioinformatics and Evolutionary Genomics March 17-18 2016, Institut de Biologie Physico-Chimique (IBPC). Paris, FRA. Muséum National d’Histoire Naturelle (MNHN), FRA., Mar 2016, Lille, France

Communication dans un congrès hal-02793573v1

Sugar accumulation and malic degradation uncoupled by temperature in microwine berries

Markus Rienth , Rezth Shahood , Gautier Sarah , Morgane Ardisson , Gilbert Lopez et al.

19. Journées Internationales de Viticulture GiESCO, May 2015, Gruissan, France. 810 p

Communication dans un congrès hal-01269212v1
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Modelling the population history using population genomics : the tomato domestication as a case of study

Christopher Sauvage , Charlotte Aichholz , Gautier Sarah , Manuel Ruiz , Mathilde Causse et al.

12. Solanaceae Conference, Université de Bordeaux (UB). FRA., Oct 2015, Bordeaux, France

Communication dans un congrès hal-01269378v1
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The night transcriptome of grapevine berries reveals new insights in developmental pattern and heat stress response

Markus Rienth , Laurent Torregrosa , Mary T. Kelly , Nathalie Luchaire , Ratthaphon Chatbanyong et al.

11. International Conference on Grapevine Breeding and Genetics, Jul 2014, Beijing, China

Communication dans un congrès hal-01601505v1

Broadening the genetic bases of durum wheat. Proceedings of the International Symposium on Genetics and Breeding of Durum Wheat

Jacques David , Muriel Tavaud , Pierre Roumet , Marie-Helene Muller , Sylvain Santoni et al.

International Symposium : Genetics and Breeding of Durum Wheat, May 2013, Rome, Italy. 636 p

Communication dans un congrès hal-02739452v1

Genotyping by sequencing polyploidy wheat using RNAseq: Pitfalls and perspectives

Muriel Tavaud-Pirra , Vincent Ranwez , Morgane Ardisson , Gautier Sarah , Sylvain Santoni et al.

International Symposium on Genetics and Breeding of Durum Wheat, May 2013, Rome, Italy

Communication dans un congrès hal-01268029v1
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Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat

Vincent Ranwez , Yan Holtz , Gautier Sarah , Morgane Ardisson , Sylvain Santoni et al.

Eleventh Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics, Oct 2013, Lyon, France. ⟨10.1186/1471-2105-14-S15-S15⟩

Communication dans un congrès hal-01137179v1

Major causes of somatic polymorphism in clonal grape cultivars

Gregory Carrier , Alexis Dereeper , Delphine Legrand , Sabine Sabot , Vincent Maillol et al.

International Plant & Animal Genome XXI, Jan 2013, San Diego, United States

Communication dans un congrès hal-01267989v1
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Broadening the genetic basis of durum wheat

Jacques David , Muriel Tavaud , Pierre Roumet , Marie-Helene Muller , Sylvain Santoni et al.

13. International Wheat Genetics Symposium, May 2013, Rome, Italy. 1 p

Communication dans un congrès hal-02807391v1

Deciphering the role of SPL9 and its regulatory network in the control of the floral transition in apple tree (Malus domestica)

Mohamad Al Bolbol , Virginia Fernandez , Kwanho Jeong , Joan Estevan , Samer El Khoury et al.

17. Plant Molecular Biology Meeting (RBMP 2024), Jul 2024, Castellon de la Plana, Spain.

Poster de conférence hal-05018893v1

Partial endoreplication challenges whole genome assembly: the case of #Vanilla planifolia# (Orchidaceae)

Sonja Siljak-Yakovlev , Olivier Bouchez , Céline Lopez-Roques , Sandra Lepers-Andrzejewski , Laurent Bourgois et al.

Plant Genomics and Gene Editing Congress: Europe, Apr 2022, The Hague, Netherlands. 2022

Poster de conférence hal-04343958v1

Study of the temperature-mediated transcriptional and post-transcriptional regulation of dormancy and budbreak in apple

Julio Garighan , Isabelle Farrera , Gautier Sarah , Priscila Grynberg , Roberto Coiti Togawa et al.

10. Rosaceae Genomics Conference, Dec 2020, Online, Spain

Poster de conférence hal-03324395v1

Insight into the hybrid mosaic structure of cultivated banana genomes

Guillaume Martin , Céline Cardi , Gautier Sarah , Cyril Jourda , Sébastien Ricci et al.

Plant Genome Evolution 2017, Oct 2017, Sitges, Spain. 1 p., 2017

Poster de conférence hal-02789316v1
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TOGGLE-3 : a tool for on the fly pipelines creation and performing robust large-scale NGS analyses

Sébastien Ravel , Christine Tranchan-Dubreuil , Cécile Monat , Gautier Sarah , Julie Orjuela-Bouniol et al.

JOBIM 2016 : Journées ouvertes de biologie informatique et mathématiques, Jun 2016, Lyon, France. , 437 p., 2016, JOBIM 2016

Poster de conférence hal-02738889v1

South Green bioinformatics platform: Update 2015

A. Armero , Franc-Christophe Baurens , Stephanie Bocs , A. Breil , Frédéric F. de Lamotte et al.

3. Plant Genomics Congress, May 2015, London, United Kingdom. Global Engage, 2015, Plant Genomics Congress

Poster de conférence hal-02739966v1