
Guillaume GAUTREAU
36
Documents
Publications
Publications
CroCoDeEL: accurate control-free detection of cross-sample contamination in metagenomic data2025
Pré-publication, Document de travail
hal-04902208
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Un droit unique de la Santé2023
Pré-publication, Document de travail
hal-04747042
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CroCoDeEL: accurate detection of cross-sample contaminations in metagenomic dataJOBIM2024 : Journées Ouvertes en Biologie, Informatique, et Mathématiques - 2024, Jun 2024, Toulouse, France
Communication dans un congrès
hal-04691708
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Histoire de la pangénomique procaryoteJournées BioinfOmics, BioinfOmics, Dec 2024, Toulouse, France
Communication dans un congrès
hal-04822722
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Integrating complex pangenome graphs2024 IEEE 40th International Conference on Data Engineering Workshops (ICDEW), May 2024, Utrecht, New Zealand. pp.350-354, ⟨10.1109/ICDEW61823.2024.00052⟩
Communication dans un congrès
hal-04660364
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From Genomics to Pangenomics: the path to pangenome graphsThe 20th MicroScope anniversary, Alexandra Calteau; David Vallenet, Sep 2023, Evry-Courcouronnes, France
Communication dans un congrès
hal-04371889
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PPanGGOLiN V2: technical enhancement and new features to analyze thousands of prokaryotic genomesThe local pangenome, Oct 2023, Alicante, Spain
Communication dans un congrès
hal-04371316
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panRGP: a pangenome-based method to predict genomic islands and explore their diversityJOBIM 2021 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2021, Paris (virtual), France
Communication dans un congrès
hal-04360257
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panRGP: a pangenome-based method to predict genomic islands and explore their diversitythe 19th European Conference on Computational Biology, ECCB 2020, Aug 2020, Barcelona (Virtual), Spain
Communication dans un congrès
hal-04360043
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysisThe 8th Congress of European Microbiologists, FEMS 2019, Jul 2019, Glasgow, United Kingdom
Communication dans un congrès
hal-04358401
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Comparative microbial pangenomics to explore mobilome dynamicsThe 8th Congress of European Microbiologists, FEMS 2019, Jul 2019, Glasgow, United Kingdom
Communication dans un congrès
hal-04359455
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PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome GraphJOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
Communication dans un congrès
hal-04355945
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PPanGGOLiN: Depicting microbial diversity via a Partitioned Pangenome GraphGenome Informatics 2018, Sep 2018, Hinxton, Cambridge, United Kingdom
Communication dans un congrès
hal-04356757
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CroCoDeEL : accurate detection of cross-sample contamination in metagenomic data10th International Human Microbiome Consortium Congress, Jun 2024, Rome, Italy.
Poster de conférence
hal-04634008
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To the species level and beyond A rationalized approach to study pangenomesJournées Ouvertes de Biologie, Informatique et Mathématiques 2024, Jun 2024, Toulouse, France. , Nextcloud, https://nextcloud.inrae.fr/s/An986qpn6CqCQek
Poster de conférence
hal-04673896
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Towards a machine learning approach for automated detection of well-to-well contamination in metagenomic data31st Annual Intelligent Systems For Molecular Biology and the 22nd Annual European Conference on Computational Biology ( ECCB/ISMB 2023 ), Jul 2023, Lyon, France
Poster de conférence
hal-04177345
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Towards a machine learning approach for automated detection of well-to-well contamination in metagenomics dataCongrès Junior Pluridisciplinaire 2023, Jun 2023, Gif-sur-Yvette, France
Poster de conférence
hal-04179293
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Extensive benchmark of machine learning methods for quantitative microbiome dataJOBIM, Jul 2021, Paris, France
Poster de conférence
hal-04163473
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PanGBank: exploring GenBank genomes through a resource of pangenome graphsJOBIM 2020 Journées Ouvertes Biologie, Informatique et Mathématiques, Jun 2020, Montpellier (virtual), France
Poster de conférence
hal-04360000
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PanGBank: depicting microbial species diversity via PPanGGOLiNJOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Poster de conférence
hal-04358380
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Comparative microbial pangenomics to explore mobilome dynamicsJOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Poster de conférence
hal-04358338
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysisJOBIM 2019 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2019, Nantes, France
Poster de conférence
hal-04358357
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysisInternational symposium on environmental and agronomical genomics, Nov 2018, Paris, France
Poster de conférence
hal-04357657
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MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic and metabolic comparative analysisJOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France
Poster de conférence
hal-04356218
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SPADEVizR: an R package for Visualization, Analysis and Integration of SPADE resultsJournées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) 2016, Jun 2016, Lyon, France. ⟨10.7490/f1000research.1112446.1⟩
Poster de conférence
hal-04862508
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Genome assembly using Nanopore-guided Long and Error-free DNA readsJournées Ouvertes en Biologie, Informatique et Mathématiques 2015, Jul 2015, Clermont-Ferrand, France
Poster de conférence
hal-04862540
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Conceptualisation et exploitation d’un graphe de pangénome partitionné comme représentation compacte de la diversité du répertoire génique des espèces procaryotesGénomique, Transcriptomique et Protéomique [q-bio.GN]. Université Paris-Saclay, 2020. Français. ⟨NNT : 2020UPASE001⟩
Thèse
tel-02933311
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