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Guislaine Refrégier

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Newly Identified Mycobacterium africanum Lineage 10, Central Africa

Christophe Guyeux , Gaetan Senelle , Adrien Le Meur , Philip Supply , Cyril Gaudin
Emerging Infectious Diseases, 2024, 30 (3), ⟨10.3201/eid3003.231466⟩
Article dans une revue hal-04489082v1

Comparison of in silico predicted Mycobacterium tuberculosis spoligotypes and lineages from whole genome sequencing data

Taane G Clark , Gary Napier , David Couvin , Guislaine Refrégier , Christophe Guyeux
Scientific Reports, 2023, 13, pp.11368 (7). ⟨10.1038/s41598-023-38384-3⟩
Article dans une revue hal-04224785v1
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The paradoxes of Mycobacterium tuberculosis molecular evolution and consequences for the inference of tuberculosis emergence date

Rima Zein Eddine , F. Hak , A. Le Meur , C. Genestet , O. Dumitrescu
Tuberculosis, 2023, 143, pp.102378. ⟨10.1016/j.tube.2023.102378⟩
Article dans une revue hal-04311241v1
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The future of CRISPR in Mycobacterium tuberculosis infection

Rima Zein Eddine , Guislaine Refrégier , Jorge Cervantes , Noemí Kaoru Yokobori
Journal of Biomedical Science, 2023, 30 (1), pp.34. ⟨10.1186/s12929-023-00932-4⟩
Article dans une revue hal-04117515v1
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Towards a better understanding of the long-lasting evolutionary history of Mycobacterium tuberculosis

Gaetan Senelle , Christophe Guyeux , Guislaine Refrégier , Christophe Sola
Tuberculosis, 2023, 143 (Suppl), pp.102374. ⟨10.1016/j.tube.2023.102374⟩
Article dans une revue hal-04489118v1

Towards a better understanding of the long-lasting evolutionary history of Mycobacterium tuberculosis

Gaëtan Senelle , Christophe Guyeux , Guislaine Refrégier , Christophe Sola
Tuberculosis, 2023, 143, pp.102374 (4)
Article dans une revue hal-04456569v1

Consistency of Mycobacterium tuberculosis Complex Spoligotyping between the Membrane-Based Method and In Silico Approach

Charlotte Genestet , Elisabeth Hodille , Albin Bernard , Maxime Vallée , Gérard Lina
Microbiology Spectrum, 2022, 10 (3), ⟨10.1128/spectrum.00223-22⟩
Article dans une revue hal-04245098v1
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Connection between two historical tuberculosis outbreak sites in Japan, Honshu, by a new ancestral Mycobacterium tuberculosis L2 sublineage

Christophe Guyeux , Gaetan Senelle , Guislaine Refrégier , Florence Bretelle-Establet , Emmanuelle Cambau
Epidemiology and Infection, 2022, 150, pp.e56. ⟨10.1017/S0950268822000048⟩
Article dans une revue hal-03924496v1

Investigating the Diversity of Tuberculosis Spoligotypes with Dimensionality Reduction and Graph Theory

Gaëtan Senelle , Christophe Guyeux , Guislaine Refrégier , Christophe Sola
Genes, 2022, 13 (12), pp.2328 (9). ⟨10.3390/genes13122328⟩
Article dans une revue hal-03932845v1
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Mycobacterium tuberculosis genetic features associated with pulmonary tuberculosis severity

Charlotte Genestet , Guislaine Refrégier , Elisabeth Hodille , Rima Zein-Eddine , Adrien Le Meur
International Journal of Infectious Diseases, 2022, 125, pp.74-83. ⟨10.1016/j.ijid.2022.10.026⟩
Article dans une revue hal-03836738v1

Molecular epidemiology of Mycobacterium tuberculosis in Brazil before the whole genome sequencing era: a literature review

Emilyn Costa Conceição , Richard Steiner Salvato , Karen Machado Gomes , Arthur Emil dos Santos Guimarães , Marília Lima da Conceição
Memórias do Instituto Oswaldo Cruz, 2021, 116, ⟨10.1590/0074-02760200517⟩
Article dans une revue hal-04245111v1

CRISPRbuilder-TB: “CRISPR-builder for tuberculosis”. Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA

Christophe Guyeux , Christophe Sola , Camille Noûs , Guislaine Refrégier
PLoS Computational Biology, 2021, 17 (3), pp.e1008500. ⟨10.1371/journal.pcbi.1008500⟩
Article dans une revue hal-04244566v1

CRISPRbuilder-TB: “CRISPR-builder for tuberculosis”. Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA

Christophe Guyeux , Christophe Sola , Camille Noûs , Guislaine Refrégier
PLoS Computational Biology, 2021, 17 (3), pp.e1008500. ⟨10.1371/journal.pcbi.1008500⟩
Article dans une revue hal-03221882v1
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NTF-RINT, a new method for the epidemiological surveillance of MDR Mycobacterium tuberculosis L2/Beijing strains

Bernice J. Klotoe , Natalia Kurepina , Elena Zholdibayeva , S. Panaiotov , Barry N. Kreiswirth
Tuberculosis, 2020, 120, pp.101894. ⟨10.1016/j.tube.2019.101894⟩
Article dans une revue hal-02502306v1

Prediction of the hidden genotype of mixed infection strains in Iranian tuberculosis patients

Mansour Kargarpour Kamakoli , Ghazaleh Farmanfarmaei , Morteza Masoumi , Sharareh Khanipour , Safoora Gharibzadeh
International Journal of Infectious Diseases, 2020, ⟨10.1016/j.ijid.2020.03.056⟩
Article dans une revue hal-02542669v1

Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences in Mycobacterium tuberculosis

Guislaine Refrégier , Christophe Sola , Christophe Guyeux
BMC Genomics, 2020, 21 (1), pp.841. ⟨10.1186/s12864-020-07178-6⟩
Article dans une revue hal-03102328v1

Spoligotyping of Mycobacterium tuberculosis isolates using Luminex®-based method in Lebanon

Khaldoun Masoud , George F. Araj , Lina Reslan , Sukayna Fadlallah , Michel Wehbe
Journal of Infection in Developing Countries, 2020, 14 (8), pp.878--885. ⟨10.3855/jidc.12072⟩
Article dans une revue hal-02944245v1

Unexpected diversity of CRISPR unveils some evolutionary patterns of repeated sequences in Mycobacterium tuberculosis

Guislaine Refrégier , Christophe Sola , Christophe Guyeux
BMC Genomics, 2020, 21 (1), pp.841. ⟨10.1186/s12864-020-07178-6⟩
Article dans une revue hal-04244580v1
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Mycobacterium tuberculosis lineage 1 genetic diversity in Pará, Brazil, suggests common ancestry with east-African isolates potentially linked to historical slave trade

Emilyn Costa Conceição , Guislaine Refrégier , Harrison Magdinier Gomes , Xavier Olessa-Daragon , Francesc Coll
Infection, Genetics and Evolution, 2019, 73, pp.337--341. ⟨10.1016/j.meegid.2019.06.001⟩
Article dans une revue hal-02169940v1

Diversity of Mycobacterium tuberculosis in the Middle Fly District of Western Province, Papua New Guinea: microbead-based spoligotyping using DNA from Ziehl-Neelsen-stained microscopy preparations

Vanina Guernier-Cambert , Tanya Diefenbach-Elstob , Bernice J. Klotoe , Graham Burgess , Daniel Pelowa
Scientific Reports, 2019, 9 (1), pp.15549. ⟨10.1038/s41598-019-51892-5⟩
Article dans une revue hal-02345362v1

Genomic characterization of MDR/XDR-TB in Kazakhstan by a combination of high-throughput methods predominantly shows the ongoing transmission of L2/Beijing 94-32 central Asian/Russian clusters

B. J. Klotoe , S. Kacimi , E. Costa-Conceicão , H. M. Gomes , R. B. Barcellos
BMC Infectious Diseases, 2019, 19 (1), pp.553. ⟨10.1186/s12879-019-4201-2⟩
Article dans une revue hal-02170568v1

Reverse line probe assay for cheap detection of Single Nucleotide Polymorphisms in Mycobacterium tuberculosis

Memona Yasmin , Guislaine Refrégier , Rubina Tabassum Siddiqui , Rizwan Iqbal , Shahid Ahmad Abbasi
Tuberculosis, 2018, 110, pp.52--55. ⟨10.1016/j.tube.2018.03.007⟩
Article dans une revue hal-02185061v1

TB-EFI, a novel 18-Plex microbead-based method for prediction of second-line drugs and ethambutol resistance in Mycobacterium tuberculosis complex

Bernice J. Klotoe , Barbara Molina-Moya , Harrison Magdinier Gomes , Michel K. Gomgnimbou , Lorenna Oliveira Suzarte
Journal of Microbiological Methods, 2018, 152, pp.10--17. ⟨10.1016/j.mimet.2018.06.003⟩
Article dans une revue hal-02179879v1
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Assessment of tuberculosis spatial hotspot areas in Antananarivo, Madagascar, by combining spatial analysis and genotyping

Noël Harijaona Ratovonirina , Niaina Rakotosamimanana , Solohery Lalaina Razafimahatratra , Mamy Serge Raherison , Guislaine Refrégier
BMC Infectious Diseases, 2017, 17 (1), pp.562. ⟨10.1186/s12879-017-2653-9⟩
Article dans une revue pasteur-01649214v1

Correlation between the BACTEC MGIT 960 culture system with Genotype MTBDRplus and TB-SPRINT in multidrug resistant Mycobacterium tuberculosis clinical isolates from Brazil

Nayanne Gama Teixeira Dantas , Phillip Noel Suffys , Wânia da Silva Carvalho , Harrison Magdinier Gomes , Isabela Neves De Almeida
Memórias do Instituto Oswaldo Cruz, 2017, 112 (11), pp.769--774. ⟨10.1590/0074-02760170062⟩
Article dans une revue hal-02191696v1

Molecular Characterization of Mycobacterium tuberculosis Strains with TB-SPRINT

Barbara Molina-Moya , Michel Kiréopori Gomgnimbou , Carmen Lafoz , Alicia Lacoma , Cristina Prat
American Journal of Tropical Medicine and Hygiene, 2017, 97 (3), pp.806--809. ⟨10.4269/ajtmh.16-0782⟩
Article dans une revue hal-02390044v1

Quick and cheap MIRU-VNTR typing of Mycobacterium tuberculosis species complex using duplex PCR.

Memona Yasmin , Stéphanie Le Moullec , Rubina Tabassum Siddiqui , Jessica de Beer , Christophe Sola
Tuberculosis, 2016, 101, pp.160-163. ⟨10.1016/j.tube.2016.10.003⟩
Article dans une revue hal-01439321v1

Turkish and Japanese Mycobacterium tuberculosis sublineages share a remote common ancestor.

Guislaine Refrégier , Edgar Abadia , Tomoshige Matsumoto , Hiromi Ano , Tetsuya Takashima
Infection, Genetics and Evolution, 2016, 45, pp.461-473. ⟨10.1016/j.meegid.2016.10.009⟩
Article dans une revue hal-01439404v1
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Genomics and Machine Learning for Taxonomy Consensus: The Mycobacterium tuberculosis Complex Paradigm

Jérôme Azé , Christophe Sola , Jian Zhang , Florian Lafosse-Marin , Memona Yasmin
PLoS ONE, 2015, 10 (7), pp.210-218. ⟨10.1371/journal.pone.0130912⟩
Article dans une revue lirmm-01348924v1

Genetic diversity and molecular epidemiology of multidrug-resistant Mycobacterium tuberculosis in Minas Gerais State, Brazil.

Nayanne Gama Teixeira Dantas , Phillip Noel Suffys , Wânia da Silva Carvalho , Harrison Magdinier Gomes , Isabela Neves de Almeida
BMC Infectious Diseases, 2015, 15 (1), pp.306. ⟨10.1186/s12879-015-1057-y⟩
Article dans une revue hal-01430798v1

Validation of a microbead-based format for spoligotyping of Legionella pneumophila

Michel Kiréopori Gomgnimbou , Christophe Ginevra , Caroline Peron-Cane , Margaux Versapuech , Guislaine Refrégier
Journal of Clinical Microbiology, 2014, 52 (7), pp.2410-2415. ⟨10.1128/JCM.00219-14⟩
Article dans une revue hal-01909052v1
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PERFORMANCE OF A HYBRID FUNGAL PATHOGEN ON PURE-SPECIES AND HYBRID HOST PLANTS

Amanda K Gibson , Guislaine Refrégier , Michael E Hood , Tatiana Giraud
International Journal of Plant Sciences, 2014, ⟨10.1086/676621⟩
Article dans une revue hal-01302688v1

"Spoligoriftyping," a dual-priming-oligonucleotide-based direct-hybridization assay for tuberculosis control with a multianalyte microbead-based hybridization system.

Michel Kiréopori Gomgnimbou , Edgar Abadia , Jian Zhang , Guislaine Refrégier , Stefan Panaiotov
Journal of Clinical Microbiology, 2012, 50 (10), pp.3172-9. ⟨10.1128/JCM.00976-12⟩
Article dans une revue hal-00763191v1

Spoligotyping of Mycobacterium africanum, Burkina Faso.

Michel K Gomgnimbou , Guislaine Refrégier , Serge P Diagbouga , Sanou Adama , Antoinette Kaboré
Emerging Infectious Diseases, 2012, 18 (1), pp.117-9. ⟨10.3201/eid1801.110275⟩
Article dans une revue hal-00763744v1

A molecular epidemiological and genetic diversity study of tuberculosis in Ibadan, Nnewi and Abuja, Nigeria.

Lovett Lawson , Jian Zhang , Michel K Gomgnimbou , Saddiq T Abdurrahman , Stéphanie Le Moullec
PLoS ONE, 2012, 7 (6), pp.e38409. ⟨10.1371/journal.pone.0038409⟩
Article dans une revue hal-00763747v1
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The use of microbead-based spoligotyping for Mycobacterium tuberculosis complex to evaluate the quality of the conventional method: Providing guidelines for Quality Assurance when working on membranes

Edgar Abadia , Jian Zhang , Viviana Ritacco , Kristin Kremer , Raymond Ruimy
BMC Infectious Diseases, 2011, 11 (1), pp.110. ⟨10.1186/1471-2334-11-110⟩
Article dans une revue pasteur-00670610v1
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A first assessment of the genetic diversity of Mycobacterium tuberculosis complex in Cambodia.

Jian Zhang , Seiha Heng , Stéphanie Le Moullec , Guislaine Refregier , Brigitte Gicquel
BMC Infectious Diseases, 2011, 11 (1), pp.42. ⟨10.1186/1471-2334-11-42⟩
Article dans une revue pasteur-00670614v1
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Using affinity propagation for identifying subspecies among clonal organisms: lessons from M. tuberculosis

Claudio Borile , Mathieu Labarre , Silvio Franz , Christophe Sola , Guislaine Refrégier
BMC Bioinformatics, 2011, 12 (1), pp.224. ⟨10.1186/1471-2105-12-224⟩
Article dans une revue pasteur-00670608v1

No Evidence of Reproductive Character Displacement between Two Sister Fungal Species Causing Anther Smut Disease in Silene

Guislaine Refrégier , Michael e. Hood , Tatiana Giraud
International Journal of Plant Sciences, 2010, 171 (8), pp.847-859. ⟨10.1086/655867⟩
Article dans une revue hal-02333052v1

Mycobacterium tuberculosis complex CRISPR genotyping: improving efficiency, throughput and discriminative power of 'spoligotyping' with new spacers and a microbead-based hybridization assay.

Jian Zhang , Edgar Abadia , Guislaine Refregier , Silva Tafaj , Maria Laura Boschiroli
Journal of Medical Microbiology, 2010, 59 (Pt 3), pp.285-94. ⟨10.1099/jmm.0.016949-0⟩
Article dans une revue hal-00527223v1

Rapidly evolving genes in pathogens: Methods for detecting positive selection and examples among fungi, bacteria, viruses and protists

Gabriela Aguileta , Guislaine Refrégier , Roxana Yockteng , Elisabeth Fournier , Tatiana Giraud
Infection, Genetics and Evolution, 2009, 9 (4), pp.656-670. ⟨10.1016/j.meegid.2009.03.010⟩
Article dans une revue hal-02333119v1

Speciation in fungi

Tatiana Giraud , Guislaine Refrégier , Mickaël Le Gac , Damien M. de Vienne , Michael E Hood
Fungal Genetics and Biology, 2008, 45 (6), pp.791--802. ⟨10.1016/j.fgb.2008.02.001⟩
Article dans une revue hal-01800069v1

Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: Prevalence of host shifts and importance of delimiting parasite species for inferring cospeciation

Guislaine Refrégier , Mickael Le Gac , Florian Jabbour , Alex Widmer , Jacqui A. Shykoff
BMC Evolutionary Biology, 2008, 8 (1), pp.100. ⟨10.1186/1471-2148-8-100⟩
Article dans une revue hal-02333196v1

Interaction between Wall Deposition and Cell Elongation in Dark-Grown Hypocotyl Cells in Arabidopsis

Guislaine Refrégier , Sandra Pelletier , Danielle Jaillard , Herman Höfte
Plant Physiology, 2004, 135 (2), pp.959-968. ⟨10.1104/pp.104.038711⟩
Article dans une revue hal-04373076v1

Resistance against herbicide isoxaben and cellulose deficiency caused by distinct mutations in same cellulose synthase isoform CESA6

Thierry T. Desprez , Samantha S. Vernhettes , Mathilde Fagard , Guislaine Refregier , Thierry Desnos
Plant Physiology, 2002, 128 (2), pp.482-490. ⟨10.1104/pp.010822⟩
Article dans une revue hal-02681400v1

PROCUSTE1 encodes a cellulose synthase required for normal cell elongation specifically in roots and dark-grown hypocotyls of Arabidopsis

Mathilde Fagard , Thierry Desnos , Thierry T. Desprez , Florence Goubet , Guislaine Refregier
The Plant cell, 2000, 12 (12), pp.2409-2423. ⟨10.1105/tpc.12.12.2409⟩
Article dans une revue hal-02698876v1
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Theory and examples of reciprocal influence between hosts and pathogens, from short-term to long term interactions: coevolution, cospeciation and pathogen speciation following host shifts

Aurélien Tellier , Damien M. de Vienne , Tatiana Giraud , Michael Hood , Guislaine Refrégier
Annette W. Barton. Host-Pathogen Interactions: Genetics, Immunology, and Physiology, Nova Science Publishers, Inc.; 1 edition (September 1, 2010), 2010, Immunology and Immune System Disorders, 978-1608762866
Chapitre d'ouvrage hal-02326400v1

Chapter 3 Genome Evolution in Plant Pathogenic and Symbiotic Fungi

Gabriela Aguileta , Michael E Hood , Guislaine Refrégier , Tatiana Giraud
Genome Evolution in Plant Pathogenic and Symbiotic Fungi, pp.151-193, 2009, ⟨10.1016/S0065-2296(08)00603-4⟩
Chapitre d'ouvrage hal-02333150v1