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Hélène Chiapello

98
Documents
Researcher identifiers

Presentation

**Professional experience** **• INRAE:** research engineer in microbial bioinformatics at the Microbiology and the food chain (MICA) scientific division, MaIAGE (Applied Mathematics and Computer Science, from Genomes to Environment) research unit, INRAE Jouy-en-Josas, France **• SFBI** (French Society of Bioinformatics): member of the board (2014-2020) and deputy president (2016-2020) **• IFB** (French Institute of Bioinformatics): co-coordinator of Training (since 2017), member of the steering committee (since 2020) and Elixir deputy Training coordinator (since 2021) **• DUBii** (University Diploma in Integrative Bioinformatics): Co-head of the diploma (2018, 2019, 2020) **Education** • 2016: HDR - Paul Sabatier university (Toulouse 3) • 1999: PhD - Pierre & Marie Curie university (Paris 6) • 1990: Master in Biochemistry - Pierre & Marie Curie university (Paris 6)

Publications

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Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates

Jeanne Laurentie , Valentin Loux , Christelle Hennequet-Antier , Emilie Chambellon , Julien Deschamps
MSphere, 2023, 8 (2), pp.e0049522. ⟨10.1128/msphere.00495-22⟩
Journal articles hal-04004063v1
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Gene co-expression network analysis of the human gut commensal bacterium Faecalibacterium prausnitzii in R-Shiny

Sandrine Auger , Virginie Mournetas , Hélène Chiapello , Valentin Loux , Philippe Langella
PLoS ONE, 2022, 17 (11), pp. e0271847. ⟨10.1371/journal.pone.0271847⟩
Journal articles hal-04083924v1
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Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium

Helit Cohen , Claire Hoede , Felix Scharte , Charles Coluzzi , Emiliano Cohen
PLoS Pathogens, 2022, 18 (4), 35 p. ⟨10.1371/journal.ppat.1010425⟩
Journal articles hal-03690615v1
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ICEscreen: a tool to detect Firmicute ICEs and IMEs, isolated or enclosed in composite structures

Julie Lao , Thomas Lacroix , Gérard Guédon , Charles Coluzzi , Sophie Payot
NAR Genomics and Bioinformatics, 2022, 4 (4), pp.lqac079. ⟨10.1093/nargab/lqac079⟩
Journal articles hal-03832376v1
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Abundance, Diversity and Role of ICEs and IMEs in the Adaptation of Streptococcus salivarius to the Environment

Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin , Virginie Libante
Journal articles hal-02922962v1
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Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue

Hela El Kafsi , Valentin Loux , Mahendra Mariadassou , Camille Blin , Hélène Chiapello
Scientific Reports, 2017, 7, pp.1-11. ⟨10.1038/srep44331⟩
Journal articles hal-01509688v1
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Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria

Franck Cerutti , Ludovic Mallet , Anaïs Painset , Claire Hoede , Annick Moisan
BMC Genomics, 2017, 18 (1), pp.882. ⟨10.1186/s12864-017-4242-0⟩
Journal articles pasteur-01740259v1
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Listeriomics : an Interactive Web Platform for Systems Biology of Listeria

Christophe Bécavin , Mikael Koutero , Nicolas Tchitchek , Franck Cerutti , Pierre Lechat
mSystems, 2017, 2 (2), pp.e00186-16. ⟨10.1128/mSystems.00186-16⟩
Journal articles pasteur-01574970v1

PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies

Ludovic Mallet , Tristan Bitard-Feildel , Franck Cerutti , Hélène Chiapello
Bioinformatics, 2017, 33 (20), pp.3283 - 3285. ⟨10.1093/bioinformatics/btx396⟩
Journal articles hal-02625602v1
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Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants

Helene Chiapello , Ludovic Mallet , Cyprien Guerin , Gabriela Aguileta , Joelle J. Amselem
Genome Biology and Evolution, 2015, 7 (10), pp.2896-2912. ⟨10.1093/gbe/evv187⟩
Journal articles hal-01222884v2
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YOC, A new strategy for pairwise alignment of collinear genomes

Raluca Uricaru , Célia Michotey , Hélène Chiapello , Eric Rivals
BMC Bioinformatics, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩
Journal articles lirmm-01170968v1
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida , Hélène Chiapello , Amal Hammani
BMC Genomics, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩
Journal articles hal-01142363v1
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Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates

Thomas Esquerre , Annick Moisan , Helene Chiapello , Liisa Arike , Raivo Vilu
BMC Genomics, 2015, 16 (1), ⟨10.1186/s12864-015-1482-8⟩
Journal articles hal-01269038v1
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Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii

Jean-Claude Ogier , Sylvie Pages , Gaelle Bisch , Helene Chiapello , Claudine Médigue
Genome Biology and Evolution, 2014, 6, pp.1495-1513. ⟨10.1093/gbe/evu119⟩
Journal articles hal-01837258v1

Genome Sequence of the Invasive Salmonella enterica subsp. enterica Serotype Enteritidis Strain LA5

Olivier Grépinet , Aurore Rossignol , Valentin Loux , Helene Chiapello , Annie Gendrault
Journal of Bacteriology, 2012, 194 (9), pp.2387-2388. ⟨10.1128/JB.00256-12⟩
Journal articles hal-03044203v1

Genes under positive selection in a model plant pathogenic fungus, Botrytis

Gabriela G. Aguileta , Juliette J. Lengellé , Helene H. Chiapello , Tatiana T. Giraud , Muriel Viaud
Infection, Genetics and Evolution, 2012, 12 (05), pp.987-996. ⟨10.1016/j.meegid.2012.02.012⟩
Journal articles hal-01000313v1

Genome sequence of the persistent Salmonella enterica subsp enterica Serotype Senftenberg Strain SS209

Olivier Grépinet , Zineb Boumart , Isabelle Virlogeux-Payant , Valentin Loux , Hélène Chiapello
Journal of Bacteriology, 2012, 194 (9), pp.2385-2386. ⟨10.1128/JB.00255-12⟩
Journal articles hal-02643377v1

Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3

Christine C. Delorme , Eric Guédon , Nicolas N. Pons , Corinne Cruaud , Arnaud A. Couloux
Journal of Bacteriology, 2011, 193 (18), pp.5041-5042. ⟨10.1128/JB.05416-11⟩
Journal articles hal-01000176v1
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CompaGB: An open framework for genome browsers comparison

Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Jean-François Gibrat , Hélène Chiapello
BMC Research Notes, 2011, 4, pp.133. ⟨10.1186/1756-0500-4-133⟩
Journal articles hal-02644023v1

Robustness assessment of whole bacterial genome segmentations

Hugo H. Devillers , Helene H. Chiapello , Sophie S. Schbath , Meriem M. El Karoui
Journal of Computational Biology, 2011, 18 (9), pp.1155-1165. ⟨10.1089/cmb.2011.0115⟩
Journal articles hal-00999893v1
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Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach

Chloé C. Ambroset , Maud Petit , Christian Brion , Isabelle Sanchez , Pierre Delobel
G3, 2011, 1, pp.263-281. ⟨10.1534/G3.111.000422⟩
Journal articles hal-01487358v1

Assessing the robustness of complete bacterial genome segmentations

Hugo Devillers , Hélène Chiapello , Sophie S. Schbath , Meriem El-Karoui
Lecture Notes in Computer Science, 2010, 6398, pp.173-187. ⟨10.1007/978-3-642-16181-0_15⟩
Journal articles hal-02654924v1
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Que faire de nos biodéchets : production d'énergie ou production de compost ? État des connaissances et des techniques de traitement pour une valorisation optimale

L. Bletzacker , Hélène Chiapello , Morgane Delorme , P. Ferrand , A. Henaut
Ingénieries eau-agriculture-territoires, 2009, 57-58, pp.89-100
Journal articles hal-02592224v1
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Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Marie Touchon , Claire Hoede , Olivier Tenaillon , Valérie Barbe , Simon Baeriswyl
PLoS Genetics, 2009, 5 (1), pp.e1000344. ⟨10.1371/journal.pgen.1000344⟩
Journal articles hal-00390293v1
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Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes

Roxana Yockteng , Sylvain Marthey , Hélène Chiapello , Annie Gendrault , Michael E Hood
BMC Genomics, 2009, 8 (1), pp.272. ⟨10.1186/1471-2164-8-272⟩
Journal articles hal-02333218v1

Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum

T. Giraud , R. Yockteng , Sylvain S. Marthey , Hélène Chiapello , Odile Jonot
Molecular Ecology Resources, 2008, 8 (2), pp.387-392. ⟨10.1111/j.1471-8286.2007.01967.x⟩
Journal articles hal-02665569v1
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FUNYBASE: the FUNGAL phYlogenomic database

Sylvain Marthey , Gabriela Aguileta , Francois Rodolphe , Annie Gendrault , Tatiana Giraud
BMC Bioinformatics, 2008, 9 (456), pp.1-10. ⟨10.1186/1471-2105-9-456⟩
Journal articles hal-01193636v1
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Amplification biases: possible differences among deviating gene expressions.

Séverine A Degrelle , Christelle Hennequet-Antier , Hélène Chiapello , Karine Piot-Kaminski , François Piumi
BMC Genomics, 2008, 9 (46), pp.46. ⟨10.1186/1471-2164-9-46⟩
Journal articles cea-00307623v1

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

Helene H. Chiapello , Annie A. Gendrault-Jacquemard , Christophe C. Caron , Jerome J. Blum , Marie Agnes M. A. Petit
312, 2008, 9 (498), pp.on line
Journal articles hal-00490135v1

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

Helene H. Chiapello , Annie A. Gendrault-Jacquemard , Christophe C. Caron , Jerome J. Blum , Marie Agnes M. A. Petit
312, 2008, 9 (498), pp.on line
Journal articles hal-00489678v1

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

Helene H. Chiapello , Annie A. Gendrault-Jacquemard , Christophe C. Caron , Jerome J. Blum , Marie Agnes M. A. Petit
312, 2008, 9 (498), pp.on line
Journal articles hal-00487406v1
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MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

Hélène Chiapello , Annie Gendrault-Jacquemard Gendrault , Christophe C. Caron , Jerome Blum , Marie Agnes M. A. Petit
BMC Bioinformatics, 2008, 9 (498), pp.on line
Journal articles hal-02655905v1

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

Helene H. Chiapello , Annie A. Gendrault-Jacquemard , Christophe C. Caron , Jerome J. Blum , Marie Agnes M. A. Petit
312, 2008, 9 (498), pp.on line
Journal articles hal-00490583v1
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Identification of DNA Motifs Implicated in Maintenance of Bacterial Core Genomes by Predictive Modeling

David Halpern , Helene Chiapello , Sophie Schbath , Stephane Robin , Christelle Hennequet-Antier
PLoS Genetics, 2007, 3 (9), pp.1614-1621;e153. ⟨10.1371/journal.pgen.0030153⟩
Journal articles hal-01197542v1
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AnovArray: a set of SAS macros for the analysis of variance of gene expression data

Christelle Hennequet-Antier , Helene H. Chiapello , Karine Piot , Severine S. Degrelle , Isabelle Hue
BMC Bioinformatics, 2005, 6, pp.150. ⟨10.1186/1471-2105-6-150⟩
Journal articles inserm-02440250v1
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Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops

Hélène Chiapello , Isabelle Bourgait , Frédéric Sourivong , Gaëlle Heuclin , Annie Gendrault-Jacquemard Gendrault
BMC Bioinformatics, 2005, 6, pp.171. ⟨10.1186/1471-2105-6-171⟩
Journal articles hal-02683426v1

Deciphering Arabidopsis thaliana gene neighborhoods through bibliographic co-citations

A. Louis , Hélène Chiapello , C. Fabry , E. Ollivier , A. Henaut
Computers and Chemistry, 2002, 26 (5), pp.511-519. ⟨10.1016/S0097-8485(02)00011-6⟩
Journal articles hal-02676436v1

Tnt1 transposition events are induced by in vitro transformation of Arabidopsis thaliana, and transposed copies integrate into genes

Béatrice Courtial , F. Feuerbach , S. Eberhard , Laurence Rohmer , Hélène Chiapello
Molecular Genetics and Genomics, 2001, 265, pp.32-42
Journal articles hal-02680720v1

Codon usage and gene function are related in sequences of Arabidopsis thaliana

Hélène Chiapello , F. Lisacek , Michel M. Caboche , A. Henaut
Gene, 1998, 209, pp.GC1-GC38
Journal articles hal-02689970v1

Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs

R. Cooke , Marc Raynal , M. Laudié , F. Grellet , Michel Delseny
Plant Journal, 1996, 9 (1), pp.101-124
Journal articles hal-02688410v1

An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana

Hermanus Höfte , Thierry T. Desprez , J. Anselem , Hélène Chiapello , Michel M. Caboche
Plant Journal, 1993, 4 (6), pp.1051-1061
Journal articles hal-02715837v1

ICEscreen: a valuable tool for automatic detection of ICEs and IMEs in Firmicutes

Nathalie N. Leblond-Bourget , Julie Lao , Sophie Payot , Thomas Lacroix , Gérard Guédon
Réunion du GDR3546 Eléments transposables, Dec 2022, Paris, France
Conference papers hal-04232460v1

Mobile Genetic Elements transferring by conjugation in the human commensal bacterium Streptococcus salivarius: abundance, diversity and role in the adaptation to environment.

Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin , Virginie Libante
Réunion du GDR3546 Eléments transposables, Dec 2021, Paris, France
Conference papers hal-03495840v1

A workflow to build a relevant and reduced bacterial dataset from NCBI

Sandra Derozier , Sam Ah-Lone , Valentin Loux , Hélène Chiapello
JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France
Conference papers hal-02733948v1

The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus.

Charles Coluzzi , Julie Lao , Gérard Guédon , Marie-Dominique Devignes , Chloé Ambroset
8th symposium on Antimicrobial Resistance in Animal and Environment, Jul 2019, Tours, France
Conference papers hal-02974531v1

Evolution et co-évolution des petits ARNs régulateurs et des gènes codants chez les bactéries

Hélène Chiapello
ANSES - Séminaire DEBUG, Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES). FRA., Jun 2018, Toulouse, France
Conference papers hal-02790775v1
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Integrating Tara oceans data sets using multiple kernels

Jérôme J. Mariette , Helene H. Chiapello , Nathalie N. Villa-Vialaneix
15th European Conference on Computational Biology (ECCB 2016), Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2016, The Hague, Netherlands. pp.3
Conference papers hal-02792439v1
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Evolution of the pan-secretome among lineages of Magnaporthe oryzae attacking different host-plants

Elisabeth E. Fournier , E E. Ortega-Abboud , Ludovic L. Mallet , Helene H. Chiapello , Cyprien C. Guerin
27th Fungal Genetics Conference, Mar 2013, Asilomar, United States. pp.281
Conference papers hal-01001508v1
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Genome evolution of fungal pathogens from the Magnaporthe oryzae/grisea clade.

Helene H. Chiapello , Ludovic Mallet Mallet , Cyprien C. Guerin , Gabriella G. Aguileta , Francois F. Rodolphe
27th Fungal Genetics Conference - Asilomar Conference Grounds,, Mar 2013, Asilomar, United States. p.76
Conference papers hal-01001510v1

Genomic comparison within Xenorhabdus genus: X. poinarii species characterized by a small genome and attenuated virulence toward insects

Jean-Claude Ogier , Sylvie Pages , Gaelle Bisch , Sebastien Carrere , Helene Chiapello
5. Congress of European Microbiologists (FEMS 2013), Jul 2013, Leipzig, Allemagne
Conference papers hal-01837266v1

Deciphering why Salmonella Gallinarum is less invasive in vitro than Salmonella Enteritidis

Aurore Rossignol , Sylvie Roche , Isabelle Virlogeux-Payant , Olivier Grépinet , Nadia Abed
I3S International Symposium Salmonella and Salmonellosis, Institut National de la Recherche Agronomique (INRA). FRA., May 2013, Saint Malo, France
Conference papers hal-02749048v1
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GEMO project: Genetic bases of pathogenicity and host specificity analyzed through comparative and evolutionary genomics in the model fungus Magnaporthe

E. Ortega-Abboud , Ludovic Mallet , Cyprien Guerin , Jonathan Kreplak , Joelle J. Amselem
9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.82-82
Conference papers hal-01019005v1
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The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae

Ludovic Mallet Mallet , Cyprien C. Guerin , Veronique V. Martin , Enrique E. Ortega-Abboud , Jonathan J. Kreplak
JOBIM-Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2012, Rennes, France. pp.379-380
Conference papers hal-01000934v1
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Alignement de génomes bactériens : méthodes, évaluation et exemples d'applications.

Helene H. Chiapello
Seminaire IRISA ( Symbiose ), Jan 2012, Rennes, France
Conference papers hal-02806114v1
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Evaluation et comparaison de logiciels de visualisation et d’exploration de génomes

Helene H. Chiapello
Seminaire Institut Pasteur, 2011, Paris, France
Conference papers hal-02803608v1
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Comparaison et annotation de 9 génomes de Magnaporthe

Helene H. Chiapello
Réunion du groupe Champignons du REID, Nov 2011, Paris, France
Conference papers hal-02802981v1

Genomic diversity of 24 Propionibacterium freudenreichii 1 strains

Hélène Falentin , Valentin Loux , Valérie Barbe , Amal Plaudet Hammani , Stéphanie-Marie Deutsch
6 Conference on Functional Genomics of Gram-positive Microorganisms 16 International Conference on Bacilli, Jun 2011, Montecatini, Italy
Conference papers hal-01454328v1
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The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae

Cyprien Guerin Guérin , Ludovic Mallet Mallet , Jonathan J. Kreplak , Joelle J. Amselem , Elisabeth E. Fournier
Conférence EMBO, Nov 2011, Sant Feliu de Guixols, Spain. pp.1
Conference papers hal-01000676v1
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GEMO: an innovative project on Evolutionary Genomics of Magnaporthe oryzae

Elisabeth E. Fournier , Didier Tharreau , Thomas T. Kroj , Hélène Chiapello , Gabriela Aguileta
8. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Aussois, France
Conference papers hal-02751005v1
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Comparison and evolution of closely related genomes: methods and examples of applications in bacteria and fungi

Helene H. Chiapello
Séminaire du LIPM, Institut National de Recherche Agronomique (INRA). UMR Interactions Plantes - Microorganismes (0441)., Nov 2010, Toulouse, France
Conference papers hal-02812455v1
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Evaluating Genome Browsers Using a Software Qualification Method Evaluation

Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Jean-François Gibrat , Helene H. Chiapello
JOBIM 2010, Sep 2010, Montpellier, France. pp.196
Conference papers hal-02751310v1

Assessing the robustness of complete bacterial genome

Hugo Devillers , Hélène Chiapello , Sophie S. Schbath , Meriem El-Karoui
RECOMB-CG 2010, Oct 2010, Ottawa, Canada. ⟨10.1007/978-3-642-16181-0_15⟩
Conference papers hal-02814833v1

Web services for microbial genome annotation using data integration

Célia Michotey , Ludovic Legrand , Helene H. Chiapello , Valentin Loux , Annie A. Gendrault-Jacquemard
JOBIM 2010 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France
Conference papers hal-02752226v1
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Origine des Spécificités Phénotypiques de la Levure œnologique a travers une Approche Génomique

Cyprien Guerin Guérin , Helene H. Chiapello , Pierre P. Nicolas
JOBIM 2010 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France. pp.184
Conference papers hal-02751369v1
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Improved sensitivity and reliability of anchor based genome alignment

Raluca Uricaru , Célia Michotey , Laurent Noé , Helene H. Chiapello , Eric Rivals
JOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p
Conference papers hal-02751358v1
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How to measure the robustness of bacterial genome comparisons?

Hugo Devillers , Helene Chiapello , Meriem El Karoui , Sophie Schbath
10èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jun 2009, Nantes, France. pp.257
Conference papers hal-01204257v1
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Improved Sensitivity And Reliability Of Anchor Based Genome Alignment

Raluca Uricaru , Célia Michotey , Laurent Noé , Hélène Chiapello , Eric Rivals
JOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36
Conference papers lirmm-00407215v1

Factors contributing to the prevalence of Integrative and Conjugative or Mobilizable Elements carrying antimicrobial resistance genes in Streptococcus suis

Stéphanie Bougeard , Manon Dechêne-Tempier , Valentin Loux , Hélène Chiapello , Virginie Libante
5th International Workshop on Streptococcus suis, Jun 2023, Bangkok / Thailand, Thailand
Conference poster hal-04232466v1
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Design and production of a plug-in tool facilitating the submission of microbial meta-omics data to an international repository

Baptiste Rousseau , Véronique Jamilloux , Thomas Denecker , Hélène Chiapello , Ariane Bize
JOBIM 2023, Jun 2023, Nancy, France.
Conference poster hal-04139284v1

Abundance and diversity of Mobile Genetic Elements carrying antibiotic resistance genes and transferring by conjugation in the human commensal bacterium Streptococcus salivarius.

Sophie Payot , Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin
5th International Caparica Congress in Antibiotic Resistance (IC2AR 2022), Sep 2022, Caparica, Lisbon, Portugal
Conference poster hal-04232454v1
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Characterization of the genomic diversity and gene content of a lactobacilli collection

Romane Junker , Victoria Chuat , Florence Valence , Michel-Yves Mistou , Hélène Chiapello
JOBIM 2021, Jul 2021, Paris, France.
Conference poster hal-03576928v1
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Precise detection of antibiotic resistance genes in chicken microbiota

Anne-Carmen Sanchez , Guillaume Kon Kam King , Sylvie Baucheron , Fanny Calenge , Hélène Chiapello
Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM - colloque virtuel, Jul 2021, Paris, France.
Conference poster hal-03337234v1
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The IFB e-Learning Working Group

Hélène Chiapello , Thomas Denecker , Gildas Le Corguillé , Pierre Poulain , Denis Puthier
JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques) 2021, Jul 2021, Paris, France.
Conference poster hal-03296617v1
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Plateforme bioinformatique MIGALE

Mouhamadou Ba , Damien Berry , David Christiany , Hélène Chiapello , Olivier Inizan
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020
Conference poster hal-04176782v1
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Plateforme bioinformatique MIGALE

Hélène Chiapello , Sandra Dérozier , Olivier Inizan , Mahendra Mariadassou , Véronique Martin
Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019
Conference poster hal-04176805v1

The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus

Charles Coluzzi , Julie Lao , Gérard Guédon , Marie-Dominique Devignes , Chloé Ambroset
4th International Workshop on Streptococcus suis, Jun 2019, Montréal, Canada.
Conference poster hal-02974525v1
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Whole metagenome analysis with metagWGS

Joanna Fourquet , Adeline Chaubet , Hélène Chiapello , Christine Gaspin , Marisa Haenni
JOBIM 2019, Jul 2019, Nantes, France. , 2019
Conference poster hal-02788137v1
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Towards an integrated approach for the annotation of ICEs and IMEs in bacterial genomes

Julie Lao , Gérard Guédon , Thomas Lacroix , Nathalie N. Leblond-Bourget , Helene H. Chiapello
JOBIM 2018, Jul 2018, Marseille, France
Conference poster hal-01829606v1
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Groupe de travail sur les Métiers de la Bioinformatique (MetBIF)

Hélène Chiapello , Samuel Mondy , Morgane Thomas-Chollier
JOBIM 2018, Jul 2018, Marseille, France
Conference poster hal-03287534v1
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Host tropism and host-pathogen interplay of typhoidal Salmonella enterica

Ludovic Mallet , Claire Hoede , Franck Cerruti , Annick Moisan , Christine Gaspin
JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. , 2017, Journées Ouvertes en Biologie, Informatique et Mathématiques. JOBIM 2017
Conference poster hal-01603254v1

Investigating mycoplasma small non-coding RNAs using synthetic biology tools

Iason Tsarmpopoulos , Camille Jollard , Géraldine Gourgues , Alain Blanchard , Isabelle Dutour
Colloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France. 2016
Conference poster hal-02742260v1

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida da Silva , Helene Chiapello , Amal Hammami
JOBIM 16. Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015, ⟨10.1186/s12864-015-1467-7⟩
Conference poster hal-01209851v1
Image document

The GEMO project: Hitchhiking DNA in Magnaporthe oryzae

Ludovic Mallet , Cyprien Guerin Guérin , Joelle J. Amselem , Elisabeth E. Fournier , Helene H. Chiapello
JOBIM 2015. Meeting of working Group Medicago sativa, Jul 2015, Clermont-Ferrand, France. , 1123 p., 2015
Conference poster hal-02801084v1

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida da Silva , Hélène Chiapello , Amal Hammami
20. Colloque du Club des Bactéries Lactiques, Jun 2015, Lille, France. , 2015
Conference poster hal-01170054v1

Comparative analysis of transposable elements in the Magnaporthe oryzae/grisea clade

Ludovic Mallet , Helene Chiapello , Cyprien Guerin , Marc Henri Lebrun , Elisabeth Fournier
PAG - Plant Animal Genome,, Jan 2013, San Diego, United States. 2013
Conference poster hal-01190539v1
Image document

IGO, Integration from Genomes to Organisms

Sandra S. Derozier , Helene H. Chiapello , Thomas Lacroix , Cyprien Guerin Guérin , Valentin Loux
JOBIM 2013, Jul 2013, Toulouse, France. , pp.246, 2013, JOBIM TOULOUSE 2013 - RÉSUMÉS COURTS (affiches)
Conference poster hal-02746442v1
Image document

Distribution and evolution of transposable elements in the Magnaporthe oryzae/grisea clade

Joelle J. Amselem , Ludovic Mallet , Helene Chiapello , Cyprien Guerin , Marc-Henri Lebrun
27. Fungal Genetics Conference, Mar 2013, Asilomar Conference Grounds, United States. 2013
Conference poster hal-01190331v1
Image document

Genome evolution of fungal pathoens from Magnaporthe oryzae/grisea clade

Marc-Henri M.-H. Lebrun , Ludovic Mallet , Cyprien Guerin , Hélène Chiapello , Enrique Ortega-Abboud
XV International congress on Molecular plant-microbe interactions, 29 juillet au 02 août 2012,, Jul 2012, Kyoto, Japan. , 2012, Poster session 21 - Structural biology
Conference poster hal-02748600v1

Banques et bases de données en biologie

Hélène Chiapello , Alexandra Louis
Bio-Informatique - principes d'utilisation des outils, Editions Quae, 2010
Book sections hal-02823616v1

Databases in biology

Hélène Chiapello
Functional Plant Genomics, Science Publishers, 2007, 978-1-57808-506-4
Book sections hal-02814265v1

Gene prediction

Pierre P. Nicolas , Hélène Chiapello
Functional plant genomics, Science Publishers, 2007, 978-1-57808-506-4
Book sections hal-02815636v1

Introduction to bioinformatics

Hélène Chiapello , Francois F. Rodolphe
Functional Plant Genomics, Science Publishers, 2007, 978-1-57808-506-4
Book sections hal-02820083v1

Banques et bases de données en biologie

Hélène Chiapello
La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5
Book sections hal-02832814v1

Annotation and databases : status and prospects

Mark M. Hoebeke , Hélène Chiapello , Jean-François Gibrat , Philippe Bessières , Jean Garnier
Database annotation in molecular biology : principles and practice, Wiley, 2004, 978-0-470-85681-9
Book sections hal-02832226v1

Prédiction de gènes

P. Nicolas , Hélène Chiapello
La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5
Book sections hal-02830852v1