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Hélène Chiapello
95
Documents
Researcher identifiers
helene-chiapello
-
0000-0001-5102-0632
- IdRef : 225345390
Presentation
**Professional experience**
**• INRAE:** research engineer in microbial bioinformatics at the Microbiology and the food chain (MICA) scientific division, MaIAGE (Applied Mathematics and Computer Science, from Genomes to Environment) research unit, INRAE Jouy-en-Josas, France
**• SFBI** (French Society of Bioinformatics): member of the board (2014-2020) and deputy president (2016-2020)
**• IFB** (French Institute of Bioinformatics): co-coordinator of Training (since 2017), member of the steering committee (since 2020) and Elixir deputy Training coordinator (since 2021)
**• DUBii** (University Diploma in Integrative Bioinformatics): Co-head of the diploma since 2018
**Education**
• 2016: HDR - Paul Sabatier university (Toulouse 3)
• 1999: PhD - Pierre & Marie Curie university (Paris 6)
• 1990: Master in Biochemistry - Pierre & Marie Curie university (Paris 6)
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Mobile Genetic Elements transferring by conjugation in the human commensal bacterium Streptococcus salivarius: abundance, diversity and role in the adaptation to environment.Réunion du GDR3546 Eléments transposables, Dec 2021, Paris, France
Conference papers
hal-03495840v1
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The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus.8th symposium on Antimicrobial Resistance in Animal and Environment, Jul 2019, Tours, France
Conference papers
hal-02974531v1
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A workflow to build a relevant and reduced bacterial dataset from NCBIJOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France
Conference papers
hal-02733948v1
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Evolution et co-évolution des petits ARNs régulateurs et des gènes codants chez les bactériesANSES - Séminaire DEBUG, Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES). FRA., Jun 2018, Toulouse, France
Conference papers
hal-02790775v1
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Integrating Tara oceans data sets using multiple kernels15th European Conference on Computational Biology (ECCB 2016), Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2016, The Hague, Netherlands. pp.3
Conference papers
hal-02792439v1
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Evolution of the pan-secretome among lineages of Magnaporthe oryzae attacking different host-plants27th Fungal Genetics Conference, Mar 2013, Asilomar, United States. pp.281
Conference papers
hal-01001508v1
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Deciphering why Salmonella Gallinarum is less invasive in vitro than Salmonella EnteritidisI3S International Symposium Salmonella and Salmonellosis, Institut National de la Recherche Agronomique (INRA). FRA., May 2013, Saint Malo, France
Conference papers
hal-02749048v1
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Genomic comparison within Xenorhabdus genus: X. poinarii species characterized by a small genome and attenuated virulence toward insects5. Congress of European Microbiologists (FEMS 2013), Jul 2013, Leipzig, Allemagne
Conference papers
hal-01837266v1
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Genome evolution of fungal pathogens from the Magnaporthe oryzae/grisea clade.27th Fungal Genetics Conference - Asilomar Conference Grounds,, Mar 2013, Asilomar, United States. p.76
Conference papers
hal-01001510v1
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The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzaeJOBIM-Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2012, Rennes, France. pp.379-380
Conference papers
hal-01000934v1
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GEMO project: Genetic bases of pathogenicity and host specificity analyzed through comparative and evolutionary genomics in the model fungus Magnaporthe9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.82-82
Conference papers
hal-01019005v1
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Alignement de génomes bactériens : méthodes, évaluation et exemples d'applications.Seminaire IRISA ( Symbiose ), Jan 2012, Rennes, France
Conference papers
hal-02806114v1
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Evaluation et comparaison de logiciels de visualisation et d’exploration de génomesSeminaire Institut Pasteur, 2011, Paris, France
Conference papers
hal-02803608v1
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Comparaison et annotation de 9 génomes de MagnaportheRéunion du groupe Champignons du REID, Nov 2011, Paris, France
Conference papers
hal-02802981v1
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Genomic diversity of 24 Propionibacterium freudenreichii 1 strains6 Conference on Functional Genomics of Gram-positive Microorganisms 16 International Conference on Bacilli, Jun 2011, Montecatini, Italy
Conference papers
hal-01454328v1
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The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzaeConférence EMBO, Nov 2011, Sant Feliu de Guixols, Spain. pp.1
Conference papers
hal-01000676v1
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GEMO: an innovative project on Evolutionary Genomics of Magnaporthe oryzae8. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Aussois, France
Conference papers
hal-02751005v1
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Comparison and evolution of closely related genomes: methods and examples of applications in bacteria and fungiSéminaire du LIPM, Institut National de Recherche Agronomique (INRA). UMR Interactions Plantes - Microorganismes (0441)., Nov 2010, Toulouse, France
Conference papers
hal-02812455v1
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Web services for microbial genome annotation using data integrationJOBIM 2010 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France
Conference papers
hal-02752226v1
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Assessing the robustness of complete bacterial genomeRECOMB-CG 2010, Oct 2010, Ottawa, Canada. ⟨10.1007/978-3-642-16181-0_15⟩
Conference papers
hal-02814833v1
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Evaluating Genome Browsers Using a Software Qualification Method EvaluationJOBIM 2010, Sep 2010, Montpellier, France. pp.196
Conference papers
hal-02751310v1
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Origine des Spécificités Phénotypiques de la Levure œnologique a travers une Approche GénomiqueJOBIM 2010 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France. pp.184
Conference papers
hal-02751369v1
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Improved Sensitivity And Reliability Of Anchor Based Genome AlignmentJOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36
Conference papers
lirmm-00407215v1
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How to measure the robustness of bacterial genome comparisons?10èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jun 2009, Nantes, France. pp.257
Conference papers
hal-01204257v1
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Improved sensitivity and reliability of anchor based genome alignmentJOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p
Conference papers
hal-02751358v1
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Design and production of a plug-in tool facilitating the submission of microbial meta-omics data to an international repositoryConference poster hal-04139284v1 |
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Characterization of the genomic diversity and gene content of a lactobacilli collectionConference poster hal-03576928v1 |
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The IFB e-Learning Working GroupConference poster hal-03296617v1 |
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Precise detection of antibiotic resistance genes in chicken microbiotaJournées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM - colloque virtuel, Jul 2021, Paris, France.
Conference poster
hal-03337234v1
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020
Conference poster
hal-04176782v1
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Whole metagenome analysis with metagWGSConference poster hal-02788137v1 |
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Plateforme bioinformatique MIGALEJournées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019
Conference poster
hal-04176805v1
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The ICE/IME Finder approach and its application to ICE/IME annotation in StreptococcusConference poster hal-02974525v1 |
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Towards an integrated approach for the annotation of ICEs and IMEs in bacterial genomesJOBIM 2018, Jul 2018, Marseille, France
Conference poster
hal-01829606v1
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Groupe de travail sur les Métiers de la Bioinformatique (MetBIF)JOBIM 2018, Jul 2018, Marseille, France
Conference poster
hal-03287534v1
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Host tropism and host-pathogen interplay of typhoidal Salmonella entericaJOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. , 2017, Journées Ouvertes en Biologie, Informatique et Mathématiques. JOBIM 2017
Conference poster
hal-01603254v1
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Investigating mycoplasma small non-coding RNAs using synthetic biology toolsColloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France. 2016
Conference poster
hal-02742260v1
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of [i]Propionibacterium freudenreichii[/i]JOBIM 16.Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015
Conference poster
hal-01209851v1
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichiiConference poster hal-01170054v1 |
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The GEMO project: Hitchhiking DNA in Magnaporthe oryzaeJOBIM 2015. Meeting of working Group Medicago sativa, Jul 2015, Clermont-Ferrand, France. , 1123 p., 2015
Conference poster
hal-02801084v1
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IGO, Integration from Genomes to OrganismsJOBIM 2013, Jul 2013, Toulouse, France. , pp.246, 2013, JOBIM TOULOUSE 2013 - RÉSUMÉS COURTS (affiches)
Conference poster
hal-02746442v1
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Comparative analysis of transposable elements in the Magnaporthe oryzae/grisea cladePAG - Plant Animal Genome,, Jan 2013, San Diego, United States. 2013
Conference poster
hal-01190539v1
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Distribution and evolution of transposable elements in the Magnaporthe oryzae/grisea clade27. Fungal Genetics Conference, Mar 2013, Asilomar Conference Grounds, United States. 2013
Conference poster
hal-01190331v1
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Genome evolution of fungal pathoens from Magnaporthe oryzae/grisea cladeXV International congress on Molecular plant-microbe interactions, 29 juillet au 02 août 2012,, Jul 2012, Kyoto, Japan. , 2012, Poster session 21 - Structural biology
Conference poster
hal-02748600v1
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FAIR training handbook2023
Books
hal-04180277v1
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SPiD: a subtilis protein interaction database5 p., 2000
Books
hal-02839427v1
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Banques et bases de données en biologieBio-Informatique - principes d'utilisation des outils, Editions Quae, 2010
Book sections
hal-02823616v1
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Gene predictionFunctional plant genomics, Science Publishers, 2007, 978-1-57808-506-4
Book sections
hal-02815636v1
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Databases in biologyFunctional Plant Genomics, Science Publishers, 2007, 978-1-57808-506-4
Book sections
hal-02814265v1
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Introduction to bioinformaticsFunctional Plant Genomics, Science Publishers, 2007, 978-1-57808-506-4
Book sections
hal-02820083v1
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Banques et bases de données en biologieLa génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5
Book sections
hal-02832814v1
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Prédiction de gènesLa génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5
Book sections
hal-02830852v1
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Annotation and databases : status and prospectsDatabase annotation in molecular biology : principles and practice, Wiley, 2004, 978-0-470-85681-9
Book sections
hal-02832226v1
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