
Helene Touzet
66
Documents
Publications
Publications
BioacPepFinder: Novel Bioinformatics Tool for the Discovery of Bioactive Peptides from Protein Digestion.4th International Conference on Food Bioactives & Health, Sep 2023, Prague, Czech Republic
Communication dans un congrès
hal-04548237
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Efficient approximations of RNA kinetics landscape using non-redundant samplingISMB/ECCB - 25th Annual international conference on Intelligent Systems for Molecular Biology/16th European Conference on Computational Biology - 2017, Jul 2017, Prague, Czech Republic. pp.i283 - i292, ⟨10.1093/bioinformatics/btx269⟩
Communication dans un congrès
hal-01500115
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Reconstruction of full-length 16S rRNA sequences for taxonomic assignment in metagenomicsJOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France
Communication dans un congrès
hal-01574629
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DiNAMO: Exact method for degenerate IUPAC motifs discovery, characterization of sequence-specific errorsJOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France
Communication dans un congrès
hal-01574630
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On the Levenshtein Automaton and the Size of the Neighborhood of a WordLATA 2016 - 10th International Conference on Language and Automata Theory and Applications, Mar 2016, Prague, Czech Republic. pp.207-218, ⟨10.1007/978-3-319-30000-9_16⟩
Communication dans un congrès
hal-01360482
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Finding and analysing microRNAs in plant genomes with miRkwoodJOBIM 2015, Jul 2015, Clermont-Ferrand, France
Communication dans un congrès
hal-01247604
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Searching for alternate RNA structures in genomic sequencesComputational Methods for Structural RNAs, CMSR'14, Sep 2014, Strasbourg, France. pp.13-24, ⟨10.15455/CMSR.2014.0002⟩
Communication dans un congrès
hal-01084319
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Lossless seeds for searching short patterns with high error ratesInternational Workshop On Combinatorial Algorithms, Oct 2014, Duluth, United States
Communication dans un congrès
hal-01079840
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SortMeRNA 2: ribosomal RNA classification for taxonomic assignationWorkshop on Recent Computational Advances in Metagenomics, ECCB 2014, Sep 2014, Strasbourg, France
Communication dans un congrès
hal-01094011
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Algebraic Dynamic Programming 2.0Workshop Haskell-Treffen an der Universität Leipzig, Jun 2013, Leipzig, Germany
Communication dans un congrès
hal-00857801
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SortMeRNA: a new software to filter total RNA for metatranscriptomic or RNA analysisJOBIM - Journées Ouvertes en Biologie, Informatique et Mathématiques - 2012, Jul 2012, Rennes, France
Communication dans un congrès
hal-00763792
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Biomanycores, open-source parallel code for many-core bioinformaticsBioinformatics Open Source Conference (BOSC 2011), 2011, Vienne, Austria
Communication dans un congrès
inria-00623390
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biomanycores.org: a repository of interoperable open-source code for many-core bioinformaticsJOBIM 2011, Jul 2011, Paris, France
Communication dans un congrès
hal-00637847
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Self-Overlapping Occurrences and Knuth-Morris-Pratt Algorithm for Weighted Matching3rd International Conference on Language and Automata Theory and Applications, Apr 2009, Tarragona, Spain. pp.481-492
Communication dans un congrès
inria-00365411
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Benchmarking RNA secondary structure comparison algorithmsJOBIM'08, 2008, Lille, France. pp.67-68
Communication dans un congrès
hal-00375710
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How to compare arc-annotated sequences: The alignment hierarchy13th String Processing and Information Retrieval, Oct 2006, Glasgow, United Kingdom. pp.291-303
Communication dans un congrès
inria-00178671
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Large Scale Matching for Position Weight MatricesCombinatorial Pattern Matching, Jul 2006, Barcelona, Spain. pp.401-412, ⟨10.1007/11780441_36⟩
Communication dans un congrès
istex
inria-00270270
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Analysis of tree edit distance algorithmsCombinatorial pattern matching, 14th Annual Symposium, CPM 2003, 2003, Germany. pp.83--95
Communication dans un congrès
hal-00307516
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Encoding the Hydra battle as a rewrite systemInternational Symposium on the Mathematical Foundations of Computer Science - MFCS'98, Aug 1998, Brno, Czech Republic, pp.267-276
Communication dans un congrès
inria-00098575
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A complex example of a simplifying rewrite systemInternational Colloquium on Automata, Languages, and Programming - ICALP'98, Jul 1998, Aalborg, Denmark, pp.507-517
Communication dans un congrès
inria-00098574
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Complexity classes and rewrite systems with polynomial interpretationCSl'98, 1998, Brno, République Tchèque, pp.372-384
Communication dans un congrès
inria-00098689
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String Processing and Information RetrievalSpringer International Publishing, 12944, 2021, Lecture Notes in Computer Science, ⟨10.1007/978-3-030-86692-1⟩
Ouvrages
hal-03368750
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Detecting MicroRNAs in Plant Genomes with miRkwoodAlejandro Pereira-Santana; Samuel David Gamboa-Tuz; Luis Carlos Rodríguez-Zapata. Plant Comparative Genomics, 2512, Springer; Humana, pp.103-120, 2022, Methods in Molecular Biology, 978-1-0716-2428-9. ⟨10.1007/978-1-0716-2429-6_8⟩
Chapitre d'ouvrage
hal-03952910
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Traitement des données - introductionLes Big Data à découvert, 2016
Chapitre d'ouvrage
hal-01574692
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Deciphering metatranscriptomic dataMethods in Molecular Biology, 1269, Springer, pp.279-291, 2015, RNA Bioinformatics, 978-1-4939-2290-1. ⟨10.1007/978-1-4939-2291-8_17⟩
Chapitre d'ouvrage
hal-01104015
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Comparative analysis of RNA genes: the caRNAc softwareNicholas Bergman. Comparative Genomics, Volume 1, Humana Press, 2007, Methods in Molecular Biology, 978-1-58829-693-1
Chapitre d'ouvrage
inria-00178557
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SARS-CoV-2 Through the Lens of Computational Biology: How bioinformatics is playing a key role in the study of the virus and its origins[Research Report] CNRS. 2021, pp.1-35
Rapport
(rapport de recherche)
hal-03170023
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Rapport de Prospective du Conseil Scientifique de l’Institut des Sciences de l’Information et leurs Interactions (INS2I)[0] CNRS. 2018, pp.1-87
Rapport
hal-01956087
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CG-seq: a toolbox for automatic annotation of genomes by comparative analysis[Research Report] RR-7428, INRIA. 2010, pp.12
Rapport
(rapport de recherche)
inria-00530507
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TnSeekLogiciel hal-04441970 v1 |
Porechop_ABILogiciel hal-04490240 v1 |
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Mirkwood2019
Logiciel
hal-04454133
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MATAMLogiciel hal-04454135 v1 |
RNAspace2010
Logiciel
hal-02819286
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