Hervé Acloque

Directeur de Recherche en génomique animale
71%
Libre accès
112
Documents
Affiliations actuelles
  • Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
  • Génétique Animale et Biologie Intégrative (GABI)
Identifiants chercheurs
Contact

Présentation

PERSONALINFORMATION

Family name, First name: ACLOQUE Hervé

Researcher unique identifier(s): http:/orcid.org/0000-0003-4761-1055

Date of birth: 28th of February, 1976

Nationality: French

https://www.researchgate.net/profile/Herve_Acloque

EDUCATION

2004 PhD in Life Sciences obtained April 30th, 2004 (Ph.D. supervisor: Pr. Jacques Samarut)

Ecole Normale Supérieure de Lyon, UMR5665, Laboratoire de Biologie Moléculaire et Cellulaire, France

CURRENTPOSITION

2021 – present INRAE, Group Leader UMR1313 GABI, team Functional Genomics for Animal Health (EFISA)

PREVIOUS POSITIONS

2018 – 2021 INRA, Senior Scientist UMR1313 GABI, team Genetic, Immunity, Animal Health

2015 – 2019 INRA, Principal Investigator at the UMRS935 ESTeam, Models of malignant and therapeutic stem cells, Villejuif, France

2010 – 2018 INRA, Senior Scientist (Chargé de Recherche 1ere classe), UMR1388 GenPhySE, CYTOGENE team, Toulouse, France

2004 – 2009 Post-doctoral Fellow. Developmental Neurobiology Dpt., Instituto de Neurociencias de Alicante, CSIC, Team of Pr. Angela Nieto, Spain

2009 Visiting Scientist. Anatomy and Developmental Biology Dpt., University College of London, Team of Pr. Claudio Stern, UK

1999 – 2004 PhD Fellow. Laboratory of Molecular and Cellular Biology, Ecole Normale Supérieure de Lyon, Team of Pr. Jacques Samarut, France

1998-1999 Graduate Student (M.Sc) Department of Animal Physiology, Laboratory of Developmental Biology and Biotechnology, INRA, Team of Pr. Jean Paul Renard, Jouy en Josas, France

TEACHING ACTIVITIES

2018- present Master program PRIAM (8h): Epigenetics/ Animal experimentation

2016 -present Master program IFSBM (4h): Cell Reprogramming, Université Paris Saclay, France

2016 -present Master program BME (4h): Mammalian Stem Cells, Université Paris Sorbonne, France

2012 – 2014 Master program (16h) – Developmental and Cellular Biology, Toulouse University, France

2008 – 2009 PhD program (20h) – Developmental Biology, University Miguel Hernandez, Instituto de Neurociencias, Spain

2002 – 2003 Supply Teacher (60h) – General Biology, Lyon University, France

** INSTITUTIONALRESPONSIBILITIES**

2021 - present Head of the team Functional Genomics for Animal Health (EFISA)

2020 - present

2017 – present Member of the Ethical Committee CEEA26

2019 - 2024t Nominated member of the Scientific Advisory Board of the INRA Animal Physiology and Livestock Systems (PHASE) Division

2017 - 2022 Elected member of the Scientific Advisory Board of the INRA Animal Genetics Division

2012–present GraduateStudentAdvisor (PhD committee): 7 PhD students from Lyon University (Stem Cells and Brain Research Institute), 3 PhD students from Toulouse University (Center for Integrative Biology, GenPhySE) and one from Paris-Saclay University (UMR935)

2014 Head of the CYTOGENE team composed of 7 permanent scientists, 7 technicians and engineers, 5 PhD students, post-docs and undergraduate students and a facility (4 people) for cytogenetic diagnostics in livestock species.

2012 Member of the scientific Committee for the restructuration of an experimental unit dedicated to pig reproduction and genetics


Compétences

Biologie Cellulaire Génomique Embryologie Analyse de données

Publications

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Publications

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Enriched atlas of lncRNA and protein-coding genes for the GRCg7b chicken assembly and its functional annotation across 47 tissues

Fabien Degalez , Mathieu Charles , Sylvain Foissac , Haijuan Zhou , Dailu Guan et al.
Scientific Reports, 2024, 14 (1), pp.6588. ⟨10.1038/s41598-024-56705-y⟩
Article dans une revue hal-04575157 v1
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Cell specification and functional interactions in the pig blastocyst inferred from single-cell transcriptomics and uterine fluids proteomics

Adrien Dufour , Cyril Kurylo , Jan B Stöckl , Denis Laloë , Yoann Bailly et al.
Genomics, 2024, 116 (2), pp.110780. ⟨10.1016/j.ygeno.2023.110780⟩
Article dans une revue hal-04410537 v1
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Identification of transcriptional regulatory variants in pig duodenum, liver, and muscle tissues

Daniel Crespo-Piazuelo , Hervé Acloque , Olga González-Rodríguez , Mayrone Mongellaz , Marie-José Mercat et al.
GigaScience, 2023, 12, pp.1-14. ⟨10.1093/gigascience/giad042⟩
Article dans une revue hal-04143060 v1

Avian primordial germ cells as key players for the conservation of genetic ressources and genome

Amélie Juanchich , S. Alves , J. Ezagal , M. Bernard , Christoph Klopp et al.
Animal. Science proceedings, 2022, 13 (5), pp.630-631. ⟨10.1016/j.anscip.2022.05.033⟩
Article dans une revue hal-03853554 v1
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RNA-Seq Data for Reliable SNP Detection and Genotype Calling

Frédéric Jehl , Fabien Degalez , Frédéric Lecerf , Maria Bernard , Laetitia Lagoutte et al.
Frontiers in Genetics, 2021, 12, pp.655707. ⟨10.3389/fgene.2021.655707⟩
Article dans une revue hal-03276149 v1
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Effets des altérations du rythme circadien sur l’évolution du cancer du sein

Eva Hadadi , Hervé Acloque
Médecine/Sciences, 2021, 37 (5), pp.538-541. ⟨10.1051/medsci/2021046⟩
Article dans une revue hal-03229326 v1

Role of circadian rhythm disorders on EMT and tumour–immune interactions in endocrine-related cancers

Eva Hadadi , Hervé Acloque
Endocrine-Related Cancer, 2021, 28 (2), pp.R67-R80. ⟨10.1530/ERC-20-0390⟩
Article dans une revue hal-03357053 v1
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Tissue resources for the functional annotation of animal genomes

Michèle Tixier-Boichard , Stéphane Fabre , Sophie Dhorne-Pollet , Adeline Goubil , Hervé Acloque et al.
Frontiers in Genetics, 2021, 12, ⟨10.3389/fgene.2021.666265⟩
Article dans une revue hal-03353872 v1
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BMAL1 Knockdown Leans Epithelial–Mesenchymal Balance toward Epithelial Properties and Decreases the Chemoresistance of Colon Carcinoma Cells

Yuan Zhang , Aurore Devocelle , Christophe Desterke , Lucas Eduardo Botelho de Souza , Éva Hadadi et al.
International Journal of Molecular Sciences, 2021, 22, ⟨10.3390/ijms22105247⟩
Article dans une revue hal-04427569 v1
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In utero exposure to metformin reduces the fertility of male offspring in adulthood

Mélanie C. Faure , Rita Khoueiry , Jusal Quanico , Hervé Acloque , Marie-Justine Guerquin et al.
Frontiers in Endocrinology, 2021, 12, pp.1-18. ⟨10.3389/fendo.2021.750145⟩
Article dans une revue hal-03462578 v1
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Modifications ciblées des génomes : Apports et impacts potentiels des nouvelles technologies pour les espèces aviaires

Alain Ducos , Bertrand B. Bed'Hom , Hervé Acloque , Bertrand Pain
Bulletin de l'Académie Vétérinaire de France, 2020, 173 (1), pp.140-150. ⟨10.3406/bavf.2020.70900⟩
Article dans une revue hal-02912741 v2
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Preimplantation development in ungulates: a 'ménage à quatre' scenario

Jérôme Artus , Isabelle Hue , Hervé Acloque
Reproduction [Cambridge], 2020, ⟨10.1530/REP-19-0348⟩
Article dans une revue hal-02912034 v1
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Characterization of a Y‐specific duplication/insertion of the anti‐Mullerian hormone type II receptor gene based on a chromosome‐scale genome assembly of yellow perch, Perca flavescens

Romain Feron , Margot Zahm , Cédric Cabau , Christophe Klopp , Céline Roques et al.
Molecular Ecology Resources, 2020, 20 (2), pp.531-543. ⟨10.1111/1755-0998.13133⟩
Article dans une revue hal-02623895 v1
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Chronic circadian disruption modulates breast cancer stemness and immune microenvironment to drive metastasis in mice

Eva Hadadi , William Taylor , Xiao-Mei Li , Yetki Aslan , Marthe Villote et al.
Nature Communications, 2020, 11 (1), pp.3193. ⟨10.1038/s41467-020-16890-6⟩
Article dans une revue inserm-02907177 v1

Single-cell transcriptome in chronic myeloid leukemia: pseudotime analysis reveals evidence of embryonic and transitional stem cell states

Sarah Pagliaro , Christoph Desterke , Hervé Acloque , Jean Claude Chomel , Lucas de Souza et al.
Experimental Hematology, 2020, 85, pp.47 - 56. ⟨10.1016/j.exphem.2020.04.005⟩
Article dans une revue hal-02912031 v1
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An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues

Frédéric Jehl , Kévin Muret , Maria Bernard , Morgane Boutin , Laetitia Lagoutte et al.
Scientific Reports, 2020, 10 (1), pp.1-17. ⟨10.1038/s41598-020-77586-x⟩
Article dans une revue hal-03039897 v1

Functional Annotation of Animal Genomes (FAANG) : Current Achievements and Roadmap

Elisabetta Giuffra , Christopher K. Tuggle , A.L. Archibald , Hervé Acloque , Amanda J. Chamberlain et al.
Annual Review of Animal Biosciences, 2019, 7 (1), pp.65-88. ⟨10.1146/annurev-animal-020518-114913⟩
Article dans une revue hal-02626183 v1
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Multi-species annotation of transcriptome and chromatin structure in domesticated animals

Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau et al.
BMC Biology, 2019, 17 (1), 25 p. ⟨10.1186/s12915-019-0726-5⟩
Article dans une revue hal-02437599 v1

Identification of valid reference genes for circadian gene-expression studies in human mammary epithelial cells

Eva Hadadi , L.E.B. de Souza , Annelise Bennaceur-Griscelli , Hervé Acloque
Chronobiology International, 2018, 35 (12), pp.1689-1701. ⟨10.1080/07420528.2018.1508151⟩
Article dans une revue hal-02621939 v1
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<i>In vitro</i> exposure to CPF affects bovine sperm epigenetic gene methylation pattern and the ability of sperm to support fertilization and embryo development

Maria Michela Pallotta , Vincenza Barbato , Alain Pinton , Hervé Acloque , Roberto Gualtieri et al.
Environmental and Molecular Mutagenesis, 2018, 60, pp.85 - 95. ⟨10.1002/em.22242⟩
Article dans une revue hal-04427582 v1

Snail2 and Zeb2 repress P-cadherin to define embryonic territories in the chick embryo

Hervé Acloque , O.H. Ocana , D. Abad , Cd Stern , M.A. Nieto
Development (Cambridge, England), 2017, 144 (4), pp.649-656. ⟨10.1242/dev.142562⟩
Article dans une revue hal-01604993 v1
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Modifications ciblées des génomes : Apports et impacts pour les espèces d’élevage

Alain Ducos , Bertrand Bed'Hom , Hervé Acloque , Bertrand Pain
INRA Productions Animales, 2017, 30 (1), pp.3-18
Article dans une revue hal-01608724 v1
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Long noncoding RNA repertoire in chicken liver and adipose tissue

Kévin Muret , Christophe Klopp , Valentin Wucher , Diane Esquerré , Fabrice Legeai et al.
Genetics Selection Evolution, 2017, 49 (1), pp.6. ⟨10.1186/s12711-016-0275-0⟩
Article dans une revue hal-01431420 v1
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GO-FAANG meeting: a Gathering On Functional Annotation of Animal Genomes

Christopher K Tuggle , Elisabetta Giuffra , Stephen W White , Laura Clarke , Huaijun Zhou et al.
Animal Genetics, 2016, 47 (5), pp.528-533. ⟨10.1111/age.12466⟩
Article dans une revue hal-02912035 v1
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A panel of embryonic stem cell lines reveals the variety and dynamic of pluripotent states in rabbits

Pierre Osteil , Anaïs Moulin , Claire Santamaria , Thierry Joly , Luc Jouneau et al.
Stem Cell Reports, 2016, 7 (3), pp.383-398. ⟨10.1016/j.stemcr.2016.07.022⟩
Article dans une revue hal-02639328 v1

Erratum to: Meiotic pairing and gene expression disturbance in germ cells from an infertile boar with a balanced reciprocal autosome-autosome translocation

Harmonie Barasc , Annabelle Congras , Nicolas Mary , Lidwine Trouilh , Valentine Marquet et al.
Chromosome Research, 2016, 24 (4), pp.529-530. ⟨10.1007/s10577-016-9534-8⟩
Article dans une revue hal-01602405 v1

Meiotic pairing and gene expression disturbance in germ cells from an infertile boar with a balanced reciprocal autosome-autosome translocation

Harmonie Barasc , Annabelle Congras , Nicolas Mary , Lidwine Trouilh , Valentine Marquet et al.
Chromosome Research, 2016, 24 (4), pp.511-527. ⟨10.1007/s10577-016-9533-9⟩
Article dans une revue hal-01602415 v1
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Non integrative strategy decreases chromosome instability and improves endogenous pluripotency genes reactivation in porcine induced pluripotent-like stem cells

Annabelle Congras , Harmonie Barasc , Kamila Canale-Tabet , Florence Plisson-Petit , Chantal Delcros et al.
Scientific Reports, 2016, 6, Non paginé. ⟨10.1038/srep27059⟩
Article dans une revue hal-02633904 v1
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Reinforcement of STAT3 activity reprogrammes human embryonic stem cells to naive-like pluripotency

Hongwei Chen , Irène Aksoy , Fabrice Gonnot , Pierre Osteil , Maxime Aubry et al.
Nature Communications, 2015, 6 (1), ⟨10.1038/ncomms8095⟩
Article dans une revue hal-01997120 v1

330 Derivation of porcine induced pluripotent stem cells from fibroblasts of a translocated azoospermic boar

Annabelle Congras , Harmonie Barasc , Chantal Delcros , Mireille Vignoles , Alain Pinton et al.
Reproduction, Fertility and Development, 2015, 27 (1), pp.254-254. ⟨10.1071/RDv27n1Ab330⟩
Article dans une revue hal-02629932 v1

Sperm DNA Methylation Analysis in Swine Reveals Conserved and Species-Specific Methylation Patterns and Highlights an Altered Methylation at the GNAS Locus in Infertile Boars

Annabelle Congras , Martine Yerle-Bouissou , Alain Pinton , Florence F. Vignoles , Laurence Liaubet et al.
Biology of Reproduction, 2014, 91 (6), pp.1-14. ⟨10.1095/biolreprod.114.119610⟩
Article dans une revue hal-02636581 v1
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Subcellular Localization of ENS-1/ERNI in Chick Embryonic Stem Cells

Sophie Blanc , Florence Ruggiero , Anne-Marie Birot , Hervé Acloque , Didier Decimo et al.
PLoS ONE, 2014, 9 (3), pp.e92039. ⟨10.1371/journal.pone.0092039⟩
Article dans une revue hal-02096948 v1
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Meiotic recombinaison analyses of individual chromosomes in male domestic pigs (sus scrofa domestica)

Nicolas Mary , Harmonie Barasc , Stéphane Ferchaud , Yvon Billon , Frederic Meslier et al.
PLoS ONE, 2014, 9 (6), pp.Non Paginé. ⟨10.1371/journal.pone.0099123⟩
Article dans une revue hal-02634784 v1
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Induced pluripotent stem cells derived from rabbits exhibit some characteristics of naïve pluripotency

Pierre P. Osteil , Yann Y. Tapponnier , Suzy S. Markossian , Murielle Godet , Barbara B. Panneau et al.
Biology Open, 2013, 2 (6), pp.613-628. ⟨10.1242/bio.20134242⟩
Article dans une revue hal-01000957 v1
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Sperm nuclear architecture is locally modified in presence of a Roberstsonian translocation t(13;17)

Hervé Acloque , Amélie Bonnet-Garnier , Florence Mompart , Alain Pinton , Martine Yerle-Bouissou
PLoS ONE, 2013, 8 (10), pp.e78005. ⟨10.1371/journal.pone.0078005⟩
Article dans une revue hal-02645259 v1

Astacin-like metallo-endopeptidase is dynamically expressed in embryonic stem cells and embryonic epithelium during morphogenesis

Hervé Acloque , Fabrice Lavial , Bertrand Pain
Developmental Dynamics, 2012, 241 (3), pp.574-582. ⟨10.1002/dvdy.23737⟩
Article dans une revue hal-02651120 v1

Mutual exclusion of transcription factors and cell behaviour in the definition of vertebrate embryonic territories

Hervé Acloque , Oscar Ocana , M Angela Nieto
Current Opinion in Genetics and Development, 2012, 22 (4), pp.308-314. ⟨10.1016/j.gde.2012.03.004⟩
Article dans une revue istex hal-02649636 v1
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The endogenous retrovirus ENS-1 provides active binding sites for transcription factors in embryonic stem cells that specify extra embryonic tissue

A. Mey , Hervé Acloque , Emmanuelle Lerat , S. Gounel , V. Tribollet et al.
Retrovirology, 2012, 9 (1), pp.21. ⟨10.1186/1742-4690-9-21⟩
Article dans une revue hal-02289815 v1

Metastatic Colonization Requires the Repression of the Epithelial-Mesenchymal Transition Inducer Prrx1

Oscar H Ocañ , Rebeca Có , Oscar h. Ocaña , Rebeca Córcoles , Ángels Fabra et al.
Cancer Cell, 2012, 22 (6), pp.709-724. ⟨10.1016/j.ccr.2012.10.012⟩
Article dans une revue hal-02912717 v1

Metastatic Colonization Requires the Repression of the Epithelial-Mesenchymal Transition Inducer Prrx1

Oscar h. Ocaña , Rebeca Córcoles , Ángels Fabra , Gema Moreno-Bueno , Hervé Acloque et al.
Cancer Cell, 2012, 22 (6), pp.709-724. ⟨10.1016/j.ccr.2012.10.012⟩
Article dans une revue hal-02912713 v1

Reciprocal Repression between Sox3 and Snail Transcription Factors Defines Embryonic Territories at Gastrulation

Hervé Acloque , Oscar H. Ocana , Ander Matheu , Karine Rizzoti , Clare Wise et al.
Developmental Cell, 2011, 21 (3), pp.546-558. ⟨10.1016/j.devcel.2011.07.005⟩
Article dans une revue hal-02650200 v1

Ectopic expression of Cvh (Chicken Vasa homologue) mediates the reprogramming of chicken embryonic stem cells to a germ cell fate

Fabrice Lavial , Hervé Acloque , Elodie Bachelard , M. Angela Nieto , Jacques Samarut et al.
Developmental Biology, 2009, 330 (1), pp.73-82. ⟨10.1016/j.ydbio.2009.03.012⟩
Article dans une revue hal-02667167 v1

Epithelial-Mesenchymal Transitions in Development and Disease

Jean Paul Thiery , Hervé Acloque , Ruby Y.J. Huang , M. Angela Nieto
Cell, 2009, 139 (5), pp.871-890. ⟨10.1016/j.cell.2009.11.007⟩
Article dans une revue hal-02912716 v1

Epithelial-mesenchymal transitions: the importance of changing cell state in development and disease

Hervé Acloque , Meghan Adams , Katherine Fishwick , Marianne Bronner-Fraser , M. Angela Angela Nieto
Journal of Clinical Investigation, 2009, 119 (6), pp.1438-1449. ⟨10.1172/JCI38019⟩
Article dans une revue hal-02912722 v1

The Oct4 homologue PouV and Nanog regulate pluripotency in chicken embryonic stem cells

Fabrice Lavial , Hervé Acloque , Federica Bertocchini , David Macleod , Sharon Boast et al.
Development (Cambridge, England), 2007, 134 (19), pp.3549-3563. ⟨10.1242/dev.006569⟩
Article dans une revue hal-02664396 v1

Snail1a and Snail1b cooperate in the anterior migration of the axial mesendoderm in the zebrafish embryo

M. Blanco , A. Barrallo-Gimeno , Hervé Acloque , A. Reyes , M. Tada et al.
Development (Cambridge, England), 2007, 134 (22), pp.4073-4081. ⟨10.1242/dev.006858⟩
Article dans une revue hal-02912729 v1

Snail genes at the crossroads of symmetric and asymmetric processes in the developing mesoderm

& M Angela Nieto , Aixa V Morales , Hervé Acloque , Oscar Ocana , Cristina A de Frutos et al.
EMBO Reports, 2006, 8 (1), pp.104-109. ⟨10.1038/sj.embor.7400867⟩
Article dans une revue hal-02912731 v1
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Transcription factor cCP2 controls gene expression in chicken embryonic stem cells

Hervé Acloque , Anne Mey , A.M. Birot , H. Gruffat , Bertrand Pain et al.
Nucleic Acids Research, 2004, 32 (7), pp.2259-2271. ⟨10.1093/nar/gkh545⟩
Article dans une revue hal-02678518 v1

Identification of a new gene family specifically expressed in chicken embryonic stem cells and early embryo.

Hervé Acloque , Valérie Risson , Anne Marie Birot , Bertrand Pain , Jacques Samarut
Mechanisms of Development, 2001, 103, pp.79-91
Article dans une revue hal-00023833 v1

Identification of a new gene family specifically expressed in chicken embryonic stem cells and early embryo

Hervé Acloque , V. Risson , M.A. Birot , R. Kutina , Bertrand Pain et al.
Mechanisms of Development, 2001, 103, pp.79-91
Article dans une revue hal-02673602 v1
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Samples collection and assays-by-sequence provided to the scientific community

Hervé Acloque
Final conference of the GENE-SWitCH project, EAAP; INRAE; INRAE-T, Nov 2023, Brussels, Belgium
Communication dans un congrès hal-04498288 v1
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Réseaux de gènes contrôlant la biologie de l'embryon de porc préimplantatoire et des cellules souches pluripotentes révélées par une approche multi-omiques à l’échelle cellule unique

Hervé Acloque
Meeting EPIPHASE, vincent coustham; nathalie beaujean, Oct 2023, Jouy en Josas, Yvelines, France
Communication dans un congrès hal-04424207 v1
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Gene networks controlling functional cell interactions in the pig embryo revealed by omics studies

Adrien Dufour , Cyril Kurylo , Jan B Stöckl , Yoann Bailly , Patrick Manceau et al.
EAAP Annual Meeting, EAAP, Aug 2023, Lyon, France
Communication dans un congrès hal-04424850 v1
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Cellules germinales primordiales aviaires au cœur des avancées de la conservation des ressources génétiques et de l’édition des génomes. L’exemple français

Amélie Juanchich , Sabine Alves , Jacky Ezagal , Maria Bernard , Christophe Klopp et al.
14. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2022, Tours, France. pp.115-123
Communication dans un congrès hal-04275281 v1
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French avian cryobank: development of reproductive biotechnologies based on primordial germ cells (PGCs) and investigation of the impact of in vitro steps on PGCs integrity and reproductive capacity

Marina Govoroun , Sabine Alves , Laura Soler-Vasco , Sophie Fouchécourt , Nadine Gérard et al.
26è World's Poultry Congress,, May 2022, Webinar, France
Communication dans un congrès hal-04276115 v1

RNA-seq data for detecting reliable SNPs & genotypes in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression !

Frédéric Jehl , Fabien Degalez , Maria Bernard , Frédéric Lecerf , Laetitia Lagoutte et al.
World Poultry Congress (WPC) 2022, Aug 2022, Paris, France
Communication dans un congrès hal-04258396 v1
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An atlas of chicken long non-coding RNAs gathering multiple sources : gene models and expression across more than twenty tissues

Frédéric Jehl , Kévin Muret , Maria Bernard , Diane Esquerré , Hervé Acloque et al.
PAG XXVII - Plant & Animal Genome Conference, Jan 2019, San Diego, United States
Communication dans un congrès hal-02790912 v1

Chromatin accessibility conservation across four livestock species

Sarah Djebali Quelen , Sylvain Foissac , Nathalie Vialaneix , Kylie Munyard , Andrea Rau et al.
Conference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Llieda, Spain
Communication dans un congrès hal-02788732 v1

FR-Agencode: An Update

Elisabetta Giuffra , Sarah Djebali , Andrea Rau , Sandrine Lagarrigue , Hervé Acloque et al.
The Plant and Animal Genome XXVII Conference (PAG), Jan 2019, San Diego, United States
Communication dans un congrès hal-03364351 v1

Multi-level conservation of chromosome conformation across livestock species reveals evolutionary links between genome structure and function

Sylvain Foissac , Sarah Djebali Quelen , Nathalie Vialaneix , Matthias Zytnicki , Andrea Rau et al.
Conference of the International Society for Animal Genetics (ISAG 2019), Jul 2019, Lleida, Spain
Communication dans un congrès hal-02788476 v1

Functional annotation of livestock genomes: chromatin structure and regulation of gene expression

Sylvain Foissac , Sarah Djebali , Kylie Munyard , Nathalie Vialaneix , Andrea Rau et al.
ASAS/ASDS Midwest Joint Meeting, Mar 2019, Omaha, United States. ⟨10.1093/jas/skz122.028⟩
Communication dans un congrès hal-02735898 v1

Generating 3D organoid-like structures from porcine induced pluripotent-like cells in vitro.

Elisabetta Giuffra , Hervé Acloque , Giorgia Egidy , Nico Taverne , Anya Taverne-Thiele et al.
11. Symposium of the French Domestic Animal Immunology Network,, Mar 2018, Tours, France
Communication dans un congrès hal-02918626 v1

Meiotic and gene expression analyses in a case of t(1;15) azoospermic boar

Alain Pinton , Anne Calgaro , Nicolas Mary , Harmonie Barasc , Nathalie Bonnet et al.
23. International Colloquium on Animal Cytogenetics and Genomics (23 ICACG), Jun 2018, Saint-Pétersburg, Russia. 360 p
Communication dans un congrès hal-02737986 v1

Single cell transcriptome in chronic myeloid leukemia (cml): pseudotime analysis reveals a rare population with embryonic stem cell features and druggable intricated transitional stem cell states

Sarah Pagliaro , Christophe Desterke , Hervé Acloque , Annelise Bennaceur-Griscelli , Ali G. Turhan
60th Annual Meeting of the American-Society-of-Hematology (ASH), American Society of Hematology (ASH). USA., Dec 2018, San Diego, United States. pp.3, ⟨10.1182/blood-2018-99-110679⟩
Communication dans un congrès hal-02733753 v1
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Analyse transcriptomique cellule-unique pour définir les populations cellulaires pluripotentes et extra-embryonnaires et leurs interactions dans le blastocyste porcin

Hervé Acloque , Yoann Bailly , Sarah Djebali , Stéphane Ferchaud , Doryan Grivault et al.
Journées Scientifiques du Département de Génétique Animale, Oct 2018, Dienné, France. 1 p
Communication dans un congrès hal-02786299 v1

Profiling the landscape of transcription and chromatin conformation reveals regulatory mechanisms involved in immune and metabolic functions

Sylvain Foissac , Sarah Djebali Quelen , Hervé Acloque , Marie-Hélène Pinard-van Der Laan , Sandrine Lagarrigue et al.
3. Journée de Séminaires du Département Phase sur l'Epigénétique EpiPhase, May 2017, Jouy-en-Josas, France
Communication dans un congrès hal-01603057 v1
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Characterization of 3D genomic interactions in fetal pig muscle

Maria Eugenia Marti Marimon , Hervé Acloque , Matthias Zytnicki , David Robelin , Sarah Djebali Quelen et al.
36. International Society for Animal Genetics Conference (ISAG), Jul 2017, Dublin, Ireland. pp.43
Communication dans un congrès hal-02868765 v1

Profiling the Nuclear Spatial Conformation of Livestock Genomes in Cell Lines and Liver Cells

Sylvain Foissac , Hervé Acloque , Florence Mompart , Diane Esquerre , David Robelin et al.
PAG XXIV - Plant and Animal Genome Conference, Jan 2016, San Diego, United States. Non paginé
Communication dans un congrès hal-01508146 v1
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Comparison of Sperm Methylome in Fertile and Infertile Boars Carriers of DNA Translocation

Hervé Acloque
PAG - Plant Animal Genome, Jan 2016, San Diego, United States
Communication dans un congrès hal-02793883 v1

Effects of balanced chromosome translocations on boar fertility and cell reprogramming

Annabelle Congras , Harmonie Barasc , Valentine Marquet , Kamila Canale-Tabet , Emeline Lhuillier et al.
22. International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jul 2016, Toulouse, France. 116p
Communication dans un congrès hal-02738753 v1

3D nuclear positioning of IGF2 alleles and trans interactions with imprinted genes in pig fetal cells

Yvette Lahbib Mansais , Maria Marti-Marimon , Valentin Voillet , Harmonie Barasc , Florence Mompart et al.
22. International Colloquim on Animal Cytogenetics and Genomics (ICACG), Jul 2016, Toulouse, France. 116 p
Communication dans un congrès hal-02743243 v1

3D nuclear positioning of IGF2 alleles and trans interactions with imprinted genes

Yvette Lahbib Mansais , Maria Marti-Marimon , Valentin Voillet , Harmonie Barasc , Florence Mompart et al.
35. Conference of the International Society for Animal Genetics (ISAG), Jul 2016, Salt Lake City, United States
Communication dans un congrès hal-02742818 v1

Investigating the nuclear spatial conformation of livestock genomes using Hi-C

Sylvain Foissac , Hervé Acloque , Florence Mompart , Diane Esquerre , David Robelin et al.
NGS'16 Genome Annotation, Apr 2016, Barcelone, Spain
Communication dans un congrès hal-01581540 v1

Analyse du comportement méiotique d'une translocation équilibrée réciproque autosome-autosome : une étude de cas chez le porc

Harmonie Barasc , Annabelle Congras , Nicolas Mary , Valentine Marquet , Stéphane Ferchaud et al.
2. Réunion d'Animation épiPHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Mar 2016, Saint-Pée-sur-Nivelle, France
Communication dans un congrès hal-02801341 v1

Effects of chromosomal translocations on DNA methylation and consequences on spermatogenesis in the germline of male pigs

Hervé Acloque
10. European Cytogenetics Conference - ECA -, Jul 2015, Strasbourg, France
Communication dans un congrès hal-02792088 v1

Analysis of male infertility: a case study in pigs

Harmonie Barasc , Nicolas Mary , Alain Ducos , Stéphane Ferchaud , Isabelle Raymond Letron et al.
21. International Colloquium on Animal Cytogenetics and Gene mapping, Jun 2014, Ischia, Italy. ⟨10.1007/s10577-014-9435-7⟩
Communication dans un congrès hal-02742348 v1
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Sperm DNA methylation analysis in swine reveals conserved and species-specific methylation patterns and highlights an altered methylation at the GNAS locus in infertile boars

Annabelle Congras , Martine Yerle-Bouissou , Alain Pinton , Florence F. Vignoles , Sylvain Foissac et al.
Conference 2014 Epiconcept "Epigenetics and Periconception Environment", Oct 2014, Vilamoura, Portugal. 72 p
Communication dans un congrès hal-02739006 v1

Transcriptome diversity at multi- and single-cell levels in rabbit pluripotent stem cells

Yann Tapponnier , Pierre Osteil , Barbara Panneau , Luc Jouneau , Cédric Cabau et al.
11. Annual Meeting International Society for Stem Cell Research (ISSCR), International Society of Stem Cell Research (ISSCR). INT., Jun 2013, Boston, United States. 1 p
Communication dans un congrès hal-01198231 v1
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Analyse de la méthylation de l’ADN spermatique chez des verrats à qualité de semence dégradée

Hervé Acloque , Stéphane Ferchaud , Martine Yerle-Bouissou
44. Journées de la Recherche Porcine, Feb 2012, Paris, France
Communication dans un congrès hal-02745264 v1
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Effects of chromosomal abnormalities on sperm nuclear architecture

Hervé Acloque , Amélie Bonnet-Garnier , Alain Ducos , Alain Pinton , Martine M. Yerle
18. International Chromosome Conference, Aug 2011, Manchester, United Kingdom. Abstract, 1 page
Communication dans un congrès hal-01189510 v1

Molecular control of pluripotency and germ line competency in chicken embryonic stem cells

Fabrice Lavial , Hervé Acloque , Eliane Bachelard , Guillaume Montillet , a . Nieto et al.
Shanghai International Symposium on Stem Cell Research, Nov 2007, Shanghai, China. ⟨10.1038/cr.2008.196⟩
Communication dans un congrès hal-02756866 v1
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Detection of titanium nanoparticles in human, animal and infant formula milk.

Camille Rivard , Nouzha Djebrani Oussedik , Romane Cloix , Catherine Hue-Beauvais , Nicolas Kuszla et al.
11th International Conference on Nanotoxicology (NanoTox), Sep 2024, VENISE, Italy
Poster de conférence hal-04723310 v1

Impact of the ingestion of titanium dioxide nanoparticles via breast milk on the respiratory health of young rabbits.

Anneline Dubard , Aurelia Bruneau , Camille Rivard , Marie Simon , Hervé Acloque et al.
Journées de recherche respiratoire, Oct 2023, Tours, France
Poster de conférence hal-04276856 v1
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Gene regulatory networks inference in the pigs embryos from scRNAseq and scMulti-omics

Adrien Dufour , Yoann Bailly , Patrick Manceau , Stéphane Ferchaud , Sylvain Foissac et al.
ISMB 2023, Jul 2023, Lyon, France
Poster de conférence hal-04167509 v1

Deciphering the molecular network controlling the biology of the pig blastocyst and its cellular interactions

Adrien Dufour , Sarah Djebali , Stéphane Ferchaud , Yoann Bailly , Patrick Manceau et al.
Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jul 2022, Rennes, France
Poster de conférence hal-04176366 v1

Selection of cell lines for the functional validation of 3D genomic interactions by genome editing

Florence Mompart , Yvette Lahbib Mansais , Anne Calgaro , Hervé Acloque , Martine M. Yerle
23. International Colloquium on Animal Cytogenetics and Genomics (23 ICACG), Jun 2018, Saint-Petersburg, Russia. Pensoft Publishers, Comparative Cytogenetics, 12 (3), 360 p., 2018, 23rd International Colloquium on Animal Cytogenetics and Genomics (23 ICACG)
Poster de conférence hal-02734307 v1

Integrative and differential analysis of transcriptomes and chromatin accessibility regions reveals regulatory mechanisms involved in pig immune and metabolic functions

Sarah Djebali Quelen , Kylie Munyard , Nathalie Villa-Vialaneix , Cédric Cabau , Andrea Rau et al.
36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01603033 v1
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Characterization of 3D genomic interactions in fetal pig muscle

Maria Marti-Marimon , Hervé Acloque , Matthias Zytnicki , Sarah Djebali Quelen , Nathalie Villa-Vialaneix et al.
36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01608046 v1

Modifications ciblées des génomes: apports et impacts potentiels des nouvelles technologies pour les espèces aviaires

Alain Ducos , Bertrand Bed'Hom , Hervé Acloque , Bertrand Pain
12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 12, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras
Poster de conférence hal-01608254 v1

Une nouvelle facette du génome de poule : les genes “longs non-codants

Kévin Muret , Christophe Klopp , Valentin Wucher , Diane Esquerre , Fabrice Legeai et al.
12. Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, Apr 2017, Tours, France. ITAVI - Institut Technique de l'Aviculture, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras, 2017, Journées de la Recherche Avicole et des Palmipèdes à Foie Gras
Poster de conférence hal-01605848 v1
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Long-non coding RNAs repertoires in liver and two T lymphocyte cell types in four livestock species

Kévin Muret , Sarah Djebali Quelen , Thomas Derrien , Cédric Cabau , Christophe Klopp et al.
36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01621915 v1
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Profiling the landscape of transcription, chromatin accessibility and chromosome conformation of cattle, pig, chicken and goat genomes [FAANG pilot project]

Sylvain Foissac , Sarah Djebali Quelen , Hervé Acloque , Philippe Bardou , Fany Blanc et al.
36th International Society for Animal Genetics Conference, Jul 2017, Dublin, Ireland. 2017, ISAG 2017 - Genomes to Phenomes - Abstract Book
Poster de conférence hal-01608449 v1

Construction of whole genome interaction maps and study of correlation with gene expression level in fetal muscle cells

Maria Marti-Marimon , Hervé Acloque , David Robelin , Matthias Zytnicki , Sarah Djebali et al.
22. International Colloquim on Animal Cytogenetics and Genomics (ICACG), Jul 2016, Toulouse, France. INRA - INP - ENVT, Chromosome Research, 24 (S1), 116 p., 2016, 22nd International Colloquim on Animal Cytogenetics and Genomics
Poster de conférence hal-02743692 v1
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Meiotic pairing and gene expression disturbance in germ cells from an infertile boar with a balanced reciprocal autosome-autosome translocation

Harmonie Barasc , Annabelle Congras , Nicolas Mary , Lidwine Trouilh , Valentine Marquet et al.
22. International Colloquium on Animal Cytogenetics and Genomics (ICACG), Jul 2016, Toulouse, France. INRA - INP - ENVT, Chromosome Research, 24 (S1), 116 p., 2016, Chromosome Research
Poster de conférence hal-01886399 v1

3D nuclear positioning of IGF2 alleles and trans interactions with imprinted genes in pig fetal cells

Yvette Lahbib Mansais , Maria Marti-Marimon , Valentin Voillet , Harmonie Barasc , Florence Mompart et al.
Conference on Genome Architecture in Space and Time, Jun 2016, Trieste, Italy. 2016
Poster de conférence hal-02794242 v1

Long-non coding RNAs repertoire in liver and adipose tissue in chicken

Kévin Muret , Christophe Klopp , Valentin Wucher , Diane D. Esquerre , Fabrice Legeai et al.
XXIV International Plant & Animal Genome (Pag), Jan 2016, San Diego, United States. 2016
Poster de conférence hal-02799305 v1

Sampling tissue for FAANG: the example of cattle and chickens in France

Michèle Tixier-Boichard , Stéphane Fabre , Sophie Dhorne-Pollet , Emmanuelle Rebours , Adeline Goubil et al.
GO-FAANG Workshop, Oct 2015, Washington DC, United States. , 1 p., 2015
Poster de conférence hal-02801142 v1

Chromosomal causes of impaired reproductive performance in swine

Alain Pinton , Anne Calgaro , Nathalie Bonnet Mouney , Nicolas Mary , Anne-Marie Loustau et al.
American Association of Swine Veterinarians, Mar 2015, Orlando, United States. , 2015
Poster de conférence hal-02794386 v1

Methylation levels at the GNAS locus is not associated with field fertility in Holstein bulls

Eli Sellem , Jean-Philippe Perrier , Hélène Kiefer , Audrey Prézelin , Hervé Acloque et al.
Epiconcept Workshop 2015 Periconception Environnement, Apr 2015, Dubrovnik, Croatia. COST Edition, 60 p., 2015, Epigenetics and Periconception Environment
Poster de conférence hal-01194109 v1
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Arcitecture nucléaire 3D et expression du génome

Martine Yerle-Bouissou , Yvette Lahbib Mansais , Florence Mompart , Hervé Acloque , David Robelin
Séminaire du Departement de Génétique Animale, Apr 2014, Fréjus, France. 2013
Poster de conférence hal-02810380 v1
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Derivation of induced pluripotent stem cells from an infertile boar carrying a reciprocal translocation

Annabelle Congras , Harmonie Barasc , Florence F. Vignoles , Alain Pinton , Marielle Afanassieff et al.
Conference 2014 Epiconcept "Epigenetics and Periconception Environment", Oct 2014, Vilamoura, Portugal. COST Office European Cooperation in Science and Technology (Portugal), 2014, Proceedings of the EPICONCEPT Conference 2014 - COST Action FA1201
Poster de conférence hal-02739129 v1
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DNA methylation analysis in sperm from infertile/subfertile boars

Annabelle Congras , Martine Yerle-Bouissou , Florence F. Vignoles , Alain Pinton , Hervé Acloque
Jacques Monod Conference, Sep 2014, Roscoff, France. 2013
Poster de conférence hal-02803541 v1
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DNA methylation analysis in sperm from infertile/subfertile boars

Hervé Acloque , Alain Pinton , Annabelle Congras , Florence F. Vignoles , Chantal Delcros et al.
33. Conference of the International Society of Animal Genetics ISAG, Jul 2012, Cairns, Australia. 2012, 33rd Conference of the International Society for Animal Genetics
Poster de conférence hal-02744773 v1