Hugues Berry

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Publications

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Automatic analysis of negation cues and scopes for medical texts in French using language models

Salim Sadoune , Antoine Richard , François Talbot , Thomas Guyet , Loïc Boussel et al.
Computers in Biology and Medicine, 2025, 197, pp.110795. ⟨10.1016/j.compbiomed.2025.110795⟩
Article dans une revue hal-04564718 v3
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Enhancing Fluorescence Correlation Spectroscopy with machine learning to infer anomalous molecular motion

Nathan Quiblier , Jan-Michael Rye , Pierre Leclerc , Henri Truong , Abdelkrim Hannou et al.
Biophysical Journal, 2025, 124 (5), pp.844-856. ⟨10.1016/j.bpj.2025.01.026⟩
Article dans une revue hal-04650578 v2
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Vascular Segmentation of Functional Ultrasound Images using Deep Learning

Hana Sebia , Thomas Guyet , Mickaël Pereira , Marco Valdebenito , Hugues Berry et al.
Computers in Biology and Medicine, 2025, 194, pp.110377. ⟨10.1016/j.compbiomed.2025.110377⟩
Article dans une revue hal-04744271 v2
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A Coupled Neural Field Model for the Standard Consolidation Theory

Lisa Blum Moyse , Hugues Berry
Journal of Theoretical Biology, 2024, 588, pp.111818
Article dans une revue hal-04527872 v1
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Quantifying membrane binding and diffusion with fluorescence correlation spectroscopy diffusion laws

Anita Mouttou , Erwan Bremaud , Julien Noero , Rayane Dibsy , Coline Arone et al.
Biophysical Journal, 2023, 122 (11), pp.2216-2229. ⟨10.1016/j.bpj.2023.01.006⟩
Article dans une revue hal-04165544 v1
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Modelling the modulation of cortical Up-Down state switching by astrocytes

Lisa Blum Moyse , Hugues Berry
PLoS Computational Biology, 2022, 18 (7), pp.e1010296. ⟨10.1371/journal.pcbi.1010296⟩
Article dans une revue hal-03737962 v3
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Control of Ca2+ signals by astrocyte nanoscale morphology at tripartite synapses

Audrey Denizot , Misa Arizono , Valentin Nägerl , Hugues Berry , Erik de Schutter
Article dans une revue hal-03582629 v2
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Lactate supply overtakes glucose when neural computational and cognitive loads scale up

Yulia Dembitskaya , Charlotte Piette , Sylvie Perez , Hugues Berry , Pierre J Magistretti et al.
Proceedings of the National Academy of Sciences of the United States of America, 2022, 119 (47), ⟨10.1073/pnas.2212004119⟩
Article dans une revue hal-03922367 v1
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A model of on/off transitions in neurons of the deep cerebellar nuclei: deciphering the underlying ionic mechanisms

Hugues Berry , Stéphane Genet
Journal of Mathematical Neuroscience, 2021, 11 (1), pp.1-34. ⟨10.1186/s13408-021-00105-3⟩
Article dans une revue hal-03190183 v1
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Anomalous Subdiffusion in Living Cells: Bridging the Gap Between Experiments and Realistic Models Through Collaborative Challenges

Maxime Woringer , Ignacio Izeddin , Cyril Favard , Hugues Berry
Frontiers in Physics, 2020, 8, pp.134. ⟨10.3389/fphy.2020.00134⟩
Article dans une revue hal-02871984 v1
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A Computational Model of Interactions Between Neuronal and Astrocytic Networks: The Role of Astrocytes in the Stability of the Neuronal Firing Rate

Kerstin Lenk , Eero Satuvuori , Jules Lallouette , Antonio Ladrón-De-Guevara , Hugues Berry et al.
Frontiers in Computational Neuroscience, 2020, 13, pp.1-19. ⟨10.3389/fncom.2019.00092⟩
Article dans une revue hal-02453587 v1
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Interdisciplinary Research in Artificial Intelligence: Challenges and Opportunities

Remy Kusters , Dusan Misevic , Hugues Berry , Antoine Cully , Yann Le Cunff et al.
Frontiers in Big Data, 2020, 3, pp.577974. ⟨10.3389/fdata.2020.577974⟩
Article dans une revue hal-03111148 v1
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BDNF controls bidirectional endocannabinoid-plasticity at corticostriatal synapses

Giuseppe Gangarossa , Sylvie Perez , Yulia Dembitskaya , Ilya Prokin , Hugues Berry et al.
Cerebral Cortex, 2019, bhz081, pp.1-18. ⟨10.1093/cercor/bhz081⟩
Article dans une revue hal-02076121 v1
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Simulation of calcium signaling in fine astrocytic processes: effect of spatial properties on spontaneous activity

Audrey Denizot , Misa Arizono , Valentin U Nägerl , Hédi Soula , Hugues Berry
PLoS Computational Biology, 2019, 15 (8, e1006795), pp.1-33. ⟨10.1371/journal.pcbi.1006795⟩
Article dans une revue hal-02184344 v2
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From in silico astrocyte cell models to neuron-astrocyte network models: A review

Franziska Oschmann , Hugues Berry , Klaus Obermayer , Kerstin Lenk
Brain Research Bulletin, 2018, 136, pp.76-84. ⟨10.1016/j.brainresbull.2017.01.027⟩
Article dans une revue hal-01461928 v2
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Astroglial-Kir4.1 in Lateral Habenula Drives Neuronal Bursts to Mediate Depression

Yihui Cui , Yan Yang , Zheyi Ni , Yiyan Dong , Guohong Cai et al.
Nature, 2018, 554, pp.323-327. ⟨10.1038/nature25752⟩
Article dans une revue hal-01683191 v1
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Dopamine-endocannabinoid interactions mediate spike-timing dependent potentiation in the striatum

Hao Xu , Sylvie Perez , Amandine Cornil , Bérangère Detraux , Ilya Prokin et al.
Nature Communications, 2018, 9, pp.4118. ⟨10.1038/s41467-018-06409-5⟩
Article dans une revue hal-01865929 v2
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Monitoring gap junctional communication in astrocytes from acute adult mouse brain slices using the gap-FRAP technique

Chenju Yi , Jérémy Theillon , Annette Koulakoff , Hugues Berry , Christian Giaume
Journal of Neuroscience Methods, 2018, 303, pp.103-113. ⟨10.1016/j.jneumeth.2018.03.005⟩
Article dans une revue hal-01734652 v1
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Robustness of STDP to spike timing jitter

Yihui Cui , Ilya Prokin , Alexandre Mendes , Hugues Berry , Laurent Venance
Scientific Reports, 2018, 8 (1), pp.8139:1-15. ⟨10.1038/s41598-018-26436-y⟩
Article dans une revue hal-01788826 v2
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Modulation of spike-timing dependent plasticity: towards the inclusion of a third factor in computational models

Alexandre Foncelle , Alexandre Mendes , Joanna Jedrzejewska-Szmek , Silvana Valtcheva , Hugues Berry et al.
Frontiers in Computational Neuroscience, 2018, 12, pp.49. ⟨10.3389/fncom.2018.00049⟩
Article dans une revue hal-01809075 v2
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Endocannabinoid dynamics gate spike-timing dependent depression and potentiation

Yihui Cui , Ilya Prokin , Hao Xu , Bruno Delord , Stéphane Genet et al.
eLife, 2016, 5, e13185 (32 p.). ⟨10.7554/eLife.13185⟩
Article dans une revue hal-01279901 v2
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Quantitative convergence towards a self similar profile in an age-structured renewal equation for subdiffusion

Hugues Berry , Thomas Lepoutre , Álvaro Mateos González
Acta Applicandae Mathematicae, 2016, 145, pp.15-45
Article dans une revue hal-01136667 v1

Suppression of IGF ‐I signals in neural stem cells enhances neurogenesis and olfactory function during aging

Zayna Chaker , Saba Aïd , Hugues Berry , Martin Holzenberger
Aging Cell, 2015, 14 (5), pp.847-856. ⟨10.1111/acel.12365⟩
Article dans une revue hal-04027220 v1
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Endocannabinoids mediate bidirectional striatal spike-timing dependent plasticity

Yihui Cui , Vincent Paille , Hao Xu , Stéphane Genet , Bruno Delord et al.
The Journal of Physiology, 2015, 593 (13), pp.2833-2849. ⟨10.1113/JP270324⟩
Article dans une revue hal-01141205 v1
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Suppression of IGF-I signals in neural stem cells enhances neurogenesis and olfactory function during aging

Zayna Chaker , Saba Aïd , Hugues Berry , Martin Holzenberger
Aging Cell, 2015, pp.847-856. ⟨10.1111/acel.12365⟩
Article dans une revue hal-01163564 v1
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Sparse short-distance connections enhance calcium wave propagation in a 3D model of astrocyte networks

Jules Lallouette , Maurizio de Pittà , Eshel Ben Jacob , Hugues Berry
Frontiers in Computational Neuroscience, 2014, 8, 45 (18 p.). ⟨10.3389/fncom.2014.00045⟩
Article dans une revue hal-00967106 v1
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The topology of astrocyte networks controls the propagation of intercellular calcium waves

Jules Lallouette , Maurizio de Pittà , Eshel Ben-Jacob , Hugues Berry
BMC Neuroscience, 2014, 15 (Suppl 1), P205 (2 p.)
Article dans une revue hal-01026523 v1
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Glutamate Mediated Astrocytic Filtering of Neuronal Activity

Gilad Wallach , Jules Lallouette , Nitzan Herzog , Maurizio de Pittà , Eshel Ben Jacob et al.
PLoS Computational Biology, 2014, 12 (10), e1003964 (19 p.). ⟨10.1371/journal.pcbi.1003964⟩
Article dans une revue hal-01077738 v2
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Astrocytic theory of working memory

Maurizio de Pittà , Eshel Ben-Jacob , Hugues Berry
BMC Neuroscience, 2014, 15 (Suppl 1), P206 (2 p.)
Article dans une revue hal-01026524 v1
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Anomalous diffusion due to hindering by mobile obstacles undergoing Brownian motion or Orstein-Ulhenbeck processes

Hugues Berry , Hugues Chaté
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2014, 89 (2), 022708 (9 p.). ⟨10.1103/PhysRevE.89.022708⟩
Article dans une revue inria-00575651 v2
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Space-induced bifurcation in repression-based transcriptional circuits

Amanda Lo Van , Hédi Soula , Hugues Berry
BMC Systems Biology, 2014, 8, 125 (14 p.)
Article dans une revue hal-01068558 v1
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Spatial distributions at equilibrium under heterogeneous transient subdiffusion

Hugues Berry , Hédi Soula
Frontiers in Physiology, 2014, 5, 437 (8 p.). ⟨10.3389/fphys.2014.00437⟩
Article dans une revue hal-01077735 v1
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Comments to the Editor. Reply to the Comment by V.P. Shkilev on "Anomalous versus slowed-down Brownian diffusion in the ligand-binding equilibrium

Hédi Soula , Bertrand Caré , Guillaume Beslon , Hugues Berry
Biophysical Journal, 2014, 106 (11), pp.2544-2546. ⟨10.1016/j.bpj.2014.03.052⟩
Article dans une revue hal-00956603 v1
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Localization of protein aggregation in Escherichia coli is governed by diffusion and nucleoid macromolecular crowding effect

Anne-Sophie Coquel , Jean-Pascal Jacob , Maël Primet , Alice Demarez , Mariella Dimiccoli et al.
PLoS Computational Biology, 2013, 9 (4), e1003038 (14 p.). ⟨10.1371/journal.pcbi.100303⟩
Article dans une revue hal-00798053 v1
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Effects of Cellular Homeostatic Intrinsic Plasticity on Dynamical and Computational Properties of Biological Recurrent Neural Networks.

Jérémie Naudé , Bruno Cessac , Hugues Berry , Bruno Delord
Journal of Neuroscience, 2013, 33 (38), pp.15032-15043. ⟨10.1523/JNEUROSCI.0870-13.2013⟩
Article dans une revue hal-00844218 v1
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Anomalous versus slowed-down Brownian diffusion in the ligand-binding equilibrium

Hédi Soula , Bertrand Caré , Guillaume Beslon , Hugues Berry
Biophysical Journal, 2013, 105 (9), pp.2064-2073. ⟨10.1016/j.bpj.2013.07.023⟩
Article dans une revue hal-00720515 v3
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Computational quest for understanding the role of astrocyte signaling in synaptic transmission and plasticity

Maurizio de Pittà , Vladislav Volman , Hugues Berry , Vladimir Parpura , Andrea Volterra et al.
Frontiers in Computational Neuroscience, 2012, 6 (98), 98 (25 p.). ⟨10.3389/fncom.2012.00098⟩
Article dans une revue (article de synthèse) hal-00762313 v2
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A THEORY of RATE CODING CONTROL by INTRINSIC PLASTICITY EFFECTS

Jérémie Naudé , Jeanne T. Paz , Hugues Berry , Bruno Delord
PLoS Computational Biology, 2012, 8 (1), pp.e1002349. ⟨10.1371/journal.pcbi.1002349⟩
Article dans une revue hal-00645336 v1

Large-scale Simulations on FPGAs: Finding the Asymptotic Critical Threshold of the Greenberg-Hastings Cellular Automata

Nikolaos Vlassopoulos , Nazim Fatès , Hugues Berry , Bernard Girau
Journal of Cellular Automata, 2012, 7 (1), pp.5-29
Article dans une revue hal-00644660 v1
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École interdisciplinaire d’échanges et de formation en biologie de Berder 2010 : histoire et mémoire en biologie

Elifsu Sabuncu , Georgia Barlovatz-Meimon , Hugues Berry
Natures Sciences Sociétés, 2011, 19, pp.62-70
Article dans une revue hal-02883776 v1

Robustness of the Critical Behaviour in the Stochastic Greenberg-Hastings Cellular Automaton Model

Hugues Berry , Nazim Fatès
International Journal of Unconventional Computing, 2011, 7 (1-2), pp.65-85
Article dans une revue inria-00598379 v1
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A tale of two stories: astrocyte regulation of synaptic depression and facilitation

Maurizio de Pittà , Vladislav Volman , Hugues Berry , Eshel Ben-Jacob
PLoS Computational Biology, 2011, 7 (12), pp.e1002293. ⟨10.1371/journal.pcbi.1002293⟩
Article dans une revue inria-00633588 v2

Dendritic signals command firing dynamics in a mathematical model of cerebellar purkinje cell

Stéphane Genet , Loic Sabarly , Emmanuel Guigon , Hugues Berry , Bruno Delord
Biophysical Journal, 2010, 99 (2), pp.427-436. ⟨10.1016/j.bpj.2010.04.056⟩
Article dans une revue hal-03171536 v1

Du chaos dans les neurones

Bruno Cessac , Hugues Berry
Interstices, 2010
Article dans une revue hal-01350194 v1

Dendritic signals command firing dynamics in a mathematical model of cerebellar Purkinje cells.

Stéphane Genet , Loïc Sabarly , Emmanuel Guigon , Hugues Berry , Bruno Delord
Biophysical Journal, 2010, 99 (2), pp.427-36. ⟨10.1016/j.bpj.2010.04.056⟩
Article dans une revue inria-00575654 v1
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Nonlinear gap junctions enable long-distance propagation of pulsating calcium waves in astrocyte networks.

Mati Goldberg , Maurizio de Pittà , Vladislav Volman , Hugues Berry , Eshel Ben-Jacob
PLoS Computational Biology, 2010, 6 (8), ⟨10.1371/journal.pcbi.1000909⟩
Article dans une revue inria-00575656 v1

Glutamate regulation of calcium and IP3 oscillating and pulsating dynamics in astrocytes.

Maurizio de Pittà , Mati Goldberg , Vladislav Volman , Hugues Berry , Eshel Ben-Jacob
Journal of Biological Physics, 2009, 35 (4), pp.383-411. ⟨10.1007/s10867-009-9155-y⟩
Article dans une revue inria-00575653 v1

Quand les bactéries se mêlent du calcul des ordinateurs

Hugues Berry , Joanna Jongwane
Interstices, 2008
Article dans une revue hal-01350414 v1

From Molecules to Organisms: Towards Multiscale Integrated Models of Biological Systems

Christophe Lavelle , Hugues Berry , Guillaume Beslon , Francisco Ginelli , Jean-Louis Giavitto et al.
Theoretical Biology Insights, 2008, 1, pp.13-22
Article dans une revue inria-00331281 v1
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Bioinformatique : de la cellule à la puce. Alchimistes de l'informatique, entretien avec Hugues Berry et Olivier Temam, propos recueillis par Dominique Chouchan.

Hugues Berry , Olivier Temam
Les Cahiers de l'INRIA - La Recherche, 2008, Homo Erectus Sort D'afrique, 419 mai 2008
Article dans une revue inria-00546805 v1

A mathematical analysis of the effects of Hebbian learning rules on the dynamics and structure of discrete-time random recurrent neural networks.

Benoit Siri , Hugues Berry , Bruno Cessac , Bruno Delord , Mathias Quoy
Neural Computation, 2008, 20, pp.2937-2966
Article dans une revue inria-00633582 v1
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A new principle for information storage in an enzymatic pathway model.

Bruno Delord , Hugues Berry , Emmanuel Guigon , Stéphane Genet
PLoS Computational Biology, 2007, 3 (6), pp.e124. ⟨10.1371/journal.pcbi.0030124⟩
Article dans une revue inria-00149083 v1
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Modeling Self-Developing Biological Neural Networks

Hugues Berry , Olivier Temam
Neurocomputing, 2007, 70 (16-18), pp.2723-2734. ⟨10.1016/j.neucom.2006.06.013⟩
Article dans une revue inria-00149082 v1

Effects of Hebbian learning on the dynamics and structure of random networks with inhibitory and excitatory neurons.

Benoît Siri , Mathias Quoy , Bruno Delord , Bruno Cessac , Hugues Berry
Journal of Physiology - Paris, 2007, 101 (1-3), pp.136-48. ⟨10.1016/j.jphysparis.2007.10.003⟩
Article dans une revue inria-00633581 v1
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Structure and dynamics of random recurrent neural networks

Hugues Berry , Mathias Quoy
Adaptive Behavior, 2006, 14, pp.129-137
Article dans une revue inria-00001065 v1
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A Sampling Method Focusing on Practicality

Daniel Gracia-Perez , Hugues Berry , Olivier Temam
IEEE Micro, 2006
Article dans une revue inria-00158808 v2
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Chaos in computer performance

Hugues Berry , Daniel Gracia Pérez , Olivier Temam
Chaos: An Interdisciplinary Journal of Nonlinear Science, 2006, 16 (1), pp.013110. ⟨10.1063/1.2159147⟩
Article dans une revue inria-00000109 v2

Adsorption-induced fibronectin aggregation and fibrillogenesis

Hugues Berry , Delphine Pellenc , Olivier Gallet
Journal of Colloid and Interface Science, 2006, 298, pp.132-144
Article dans une revue inria-00001063 v1

Adsorption-induced conformational changes in protein diffusion-aggregation surface assemblies

Hugues Berry , Delphine Pellenc , Olivier Gallet
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2005, 72, pp.051904
Article dans une revue inria-00001064 v1
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Characterizing Self-Developing Biological Neural Networks: A First Step Towards their Application To Computing Systems

Hugues Berry , Olivier Temam
Lecture Notes in Computer Science, 2005, 3512, pp.306-317
Article dans une revue inria-00000024 v1

Antibiotic resistance and virulence properties of Pseudomonas aeruginosa strains from mechanically ventilated patients with pneumonia in intensive care units: comparison with imipenem-resistant extra-respiratory tract isolates from uninfected patients

Patrick Di Martino , Hélène Gagnière , Hugues Berry , Laurent Bret
Microbes and Infection, 2002, 4 (6), pp.613-620
Article dans une revue hal-01951134 v1
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Evaluating PDE discovery methods for multiscale modeling of biological signals.

Andréa Ducos , Audrey Denizot , Thomas Guyet , Hugues Berry
23rd International Conference on Computational Methods in Systems Biology (CMSB), François Fages; Sabine Pérès, Sep 2025, Lyon, France
Communication dans un congrès hal-05128224 v1
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Stochastic Spatially-Extended Simulations Predict the Effect of ER Distribution on Astrocytic Microdomain Ca2+ Activity

Audrey Denizot , Corrado Calì , Hugues Berry , Erik de Schutter
NANOCOM 2021: Eighth Annual ACM International Conference on Nanoscale Computing and Communication, Sep 2021, New York, NY, United States. pp.1-5, ⟨10.1145/3477206.3477456⟩
Communication dans un congrès hal-03590777 v1
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Simulation of Astrocytic Calcium Dynamics in Lattice Light Sheet Microscopy Images

Anaïs Badoual , Misa Arizono , Audrey Denizot , Mathieu Ducros , Hugues Berry et al.
ISBI 2021 - IEEE International Symposium on Biomedical Imaging, Apr 2021, Nice, France. pp.1-5, ⟨10.1109/ISBI48211.2021.9433984⟩
Communication dans un congrès hal-03106797 v1

Control of recurrent neural network dynamics by homeostatic intrinsic plasticity

Bruno Cessac , Jérémie Naudé , Hugues Berry , Bruno Delord
Workshop on neural population dynamics, Feb 2015, Gif sur Yvette, France
Communication dans un congrès hal-01225622 v1

Effects of Cellular Homeostatic Intrinsic Plasticity on Dynamical and Computational Properties of Biological Recurrent Neural Networks

Jeremie Naudé , Bruno Cessac , Hugues Berry , Bruno Delord
LACONEU 2014, Jan 2014, Valparaiso, Chile. 1 page
Communication dans un congrès hal-01095601 v1

Topology drives calcium wave propagation in 3d astrocyte network

Jules Lallouette , Hugues Berry
Proceedings of the European Conference on Complex Systems 2012, Sep 2012, Bruxelles, Belgium. pp.453-463, ⟨10.1007/978-3-319-00395-5_56⟩
Communication dans un congrès hal-01339151 v1
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Endocannabinoids mediate spike-timing dependent potentiation and depression: a model-based experimental approach

Yihui Cui , Vincent Paille , Bruno Delord , Stéphane Genet , Elodie Fino et al.
the Twenty Second Annual Computational Neuroscience Meeting: CNS*2013, Jul 2013, Paris, France. O1 (2 p.), ⟨10.1186/1471-2202-14-S1-O1⟩
Communication dans un congrès inserm-00842298 v1
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Topology drives calcium wave propagation in 3D astrocyte networks

Jules Lallouette , Hugues Berry
European Conference on Complex Systems 2012, 2012, Bruxelles, Belgium. pp.453-463
Communication dans un congrès hal-00758998 v1

Automatic Abstraction and Fault Tolerance in Cortical Microarchitectures

Atif Hashmi , Hugues Berry , Olivier Temam , Mikko Lipasti
ACM/IEEE, International Symposium on Computer Architecture (ISCA), Jun 2011, San Jose, CA, United States
Communication dans un congrès hal-00656658 v1
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Automatic Abstraction and Fault Tolerance in Cortical Microachitectures

Atif Hashmi , Hugues Berry , Olivier Temam , Mikko Lipasti
38th ACM/IEEE International Symposium on Computer Architecture, ISCA 2011, Jun 2011, San Jose, CA, United States
Communication dans un congrès inria-00579771 v1

CMA: Chip Multi-Accelerator

Dominik Auras , Sylvain Girbal , Hugues Berry , Olivier Temam , Sami Yehia
IEEE Symposium on Application Specific Processors, SASP 2010., Jun 2010, Anaheim, CA, United States
Communication dans un congrès inria-00633586 v1
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On the determinants of calcium wave propagation distance in astrocyte networks: nonlinear gap junctions and oscillatory modes

Mati Goldberg , Maurizio de Pittà , Vladislav Volman , Hugues Berry , Eshel Ben-Jacob
Cinquième conférence plénière française de Neurosciences Computationnelles, "Neurocomp'10", Aug 2010, Lyon, France
Communication dans un congrès hal-00553419 v1
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Stream and Memory Hierarchy Design for Multi-Purpose Accelerators

Sylvain Girbal , Sami Yehia , Hugues Berry , Olivier Temam
1st Workshop on SoC Architecture, Accelerators and Workloads (SAW-1), Jan 2010, Bangalore, India
Communication dans un congrès inria-00633580 v1

Memory Interface for Multi-Purpose Multi-Stream Accelerators

Dominik Auras , Sylvain Girbal , Hugues Berry , Olivier Temam , Sami Yehia
International Conference on Compilers, Architectures and Synthesis for Embedded Systems, CASES 2010, 2010, Scottsdale, AZ, United States
Communication dans un congrès inria-00633587 v1
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Robustness of the critical behaviour in a discrete stochastic reaction-diffusion medium

Nazim A. Fatès , Hugues Berry
IWNC'09, 2009, Himeji, Japan
Communication dans un congrès inria-00396473 v1

An FPGA Design for the Stochastic Greenberg-Hastings Cellular Automata

Nikolaos Vlassopoulos , Nazim A. Fatès , Hugues Berry , Bernard Girau
International Conference on High Performance Computing & Simulation - HPCS 2010, Jun 2010, Caen, France. pp.565-574
Communication dans un congrès inria-00522193 v1
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The impact of network topology on self-organizing maps

Fei Jiang , Hugues Berry , Marc Schoenauer
First ACM/SIGEVO Summit on Genetic and Evolutionary Computation, GEC-2009, Jun 2009, Shanghai, China
Communication dans un congrès inria-00633584 v1

Reconciling Specialization and Flexibility Through Compound Circuits.

Sami Yehia , Sylvain Girbal , Hugues Berry , Olivier Temam
5th International Symposium on High-Performance Computer Architecture, HPCA, Feb 2009, Raleigh, North Carolina, United States
Communication dans un congrès inria-00633585 v1
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A formalization of the computational impact of intrinsic plasticity

Jérémie Naudé , Stéphane Genet , Hugues Berry , Séverine Mahon , Jeanne Paz et al.
Deuxième conférence française de Neurosciences Computationnelles, "Neurocomp08", Oct 2008, Marseille, France
Communication dans un congrès hal-00331558 v1
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Unsupervised Learning of Echo State Networks: Balancing the Double Pole

Fei Jiang , Hugues Berry , Marc Schoenauer
GECCO- 008 - Genetic and Evolutionary Computation Conference, Jul 2008, Atlanta, GA, United States
Communication dans un congrès inria-00633583 v1
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Supervised and Evolutionary Learning of Echo State Networks

Fei Jiang , Hugues Berry , Marc Schoenauer
International Conference on Parallel Problem Solving From Nature, Sep 2008, Dortmund, Germany
Communication dans un congrès inria-00337235 v1
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Optimising the topology of complex neural networks

Fei Jiang , Hugues Berry , Marc Schoenauer
ECCS'07, Complex Systesms Society, Oct 2007, Dresden, Germany
Communication dans un congrès inria-00175721 v1

Topological and dynamical structures induced by Hebbian learning in random neural networks

Benoit Siri , Hugues Berry , Bruno Cessac , Bruno Delord , Mathias Quoy
ECCS, 2007, Dresde, Germany
Communication dans un congrès hal-03712545 v1

Topological and dynamical structures induced by Hebbian learning in random neural networks

Benoit Siri , Hugues Berry , Bruno Cessac , Bruno Delord , Mathias Quoy
ICCS, Jun 2006, Boston, United States
Communication dans un congrès hal-03712537 v1
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Budgeted Region Sampling (BeeRS): Do Not Separate Sampling From Warm-Up, And Then Spend Wisely Your Simulation Budget

Daniel Gracia Pérez , Hugues Berry , Olivier Temam
5th IEEE International Symposium on Signal Processing and Information Technology, Dec 2005, Athens, Greece
Communication dans un congrès inria-00001061 v2
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IDDCA: A New Clustering Approach For Sampling

Daniel Gracia Pérez , Hugues Berry , Olivier Temam
MoBS: Workshop on Modeling, Benchmarking, and Simulation, Jun 2005, Madison, Wisconsin, United States
Communication dans un congrès inria-00001062 v1

Structure and dynamics of random recurrent neural nets

Hugues Berry , Mathias Quoy
ECAL, 2005, Canterbury, United Kingdom
Communication dans un congrès hal-03712523 v1
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Vascular Segmentation of fUS Images using Deep Learning

Hana Sebia , Thomas Guyet , Hugues Berry , Benjamin Vidal
Intelligence Artificielle en Imagerie Biomédicale (IABM), Mar 2025, Nice, France
Poster de conférence hal-04964498 v1
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Simulation of Astrocytic Calcium Dynamics in Lattice Light Sheet Microscopy Images

Anaïs Badoual , Misa Arizono , Audrey Denizot , Mathieu Ducros , Hugues Berry et al.
ISBI 2021 - IEEE International Symposium on Biomedical Imaging, Apr 2021, Nice, France. pp.1
Poster de conférence hal-03516709 v1

Le trafic des triglycérides au travers de l’entérocyte : une vision mosaïque pour la modélisation mathématique

Julie Etienne , Armelle Penhoat , Hugues Berry , Marie-Caroline Michalski , Carole Knibbe
JFN 2020 - Journées Francophones de Nutrition, Nov 2020, En ligne, France
Poster de conférence hal-03149846 v1
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Endocannabinoids mediate spike-timing dependent potentiation and depression: a model-based experimental approach

Yihui Cui , Vincent Paille , Bruno Delord , Stéphane Genet , Elodie Fino et al.
Twenty Second Annual Computational Neuroscience Meeting : CNS 2013, Jul 2013, Paris, France. 14 (Suppl 1), O1 (1 p.), 2013
Poster de conférence hal-00842299 v1
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The remarkable effect of network topology on calcium wave propagation in astrocyte networks

Jules Lallouette , Mati Goldberg , Maurizio de Pittà , Eshel Ben-Jacob , Hugues Berry
Multidisciplinary approaches to quantify astrocyte neuron signaling, Jul 2012, Barcelona, Spain. 1 p
Poster de conférence hal-00759232 v1

Les utilisations de l'IA pour l'hôpital et la santé publique : données nécessaires, applications et obstacles potentiels

Hugues Berry
Christian Paul; Daniel Le Métayer. Maîtriser l'IA au service de l'action publique, Berger-Levrault, 2023, 978-2-7013-2183-7
Chapitre d'ouvrage hal-04165489 v1

Pandémie de Covid-19. L'aide de l'IA et du numérique

Hugues Berry , Laurence Watier
Bernard NORDLINGER; Cedric VILLANI; Olivier de FRESNOYE. Médecine et intelligence artificielle, CNRS, 2022, 9782271141514
Chapitre d'ouvrage hal-04165597 v1
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G protein-coupled receptor-mediated calcium signaling in astrocytes

Maurizio de Pittà , Eshel Ben-Jacob , Hugues Berry
Maurizio De Pittà; Hugues Berry. Computational Glioscience, Springer, pp.115-150, 2019, Springer Series in Computational Neuroscience, 978-3-030-00817-8. ⟨10.1007/978-3-030-00817-8_5⟩
Chapitre d'ouvrage hal-01995850 v1
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A Neuron-Glial Perspective for Computational Neuroscience

Maurizio de Pittà , Hugues Berry
Maurizio de Pittà; Hugues Berry. Computational Glioscience, Spinger, pp.3-35, 2019, Springer Series in Computational Neuroscience, 978-3-030-00817-8. ⟨10.1007/978-3-030-00817-8_1⟩
Chapitre d'ouvrage hal-01995849 v1
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Intracellular Ca 2+ Dynamics in Astrocytes: Modeling the Underlying Spatiotemporal Diversity

Audrey Denizot , Hugues Berry , Sharmila Venugopal
Encyclopedia of Computational Neuroscience, pp.1-19, In press
Chapitre d'ouvrage hal-02419317 v1
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Astrocyte networks and intercellular calcium propagation

Jules Lallouette , Maurizio de Pittà , Hugues Berry
Maurizio De Pittà; Hugues Berry. Computational Glioscience, pp.177-210, 2019, Springer Series in Computational Neuroscience, 978-3-030-00817-8. ⟨10.1007/978-3-030-00817-8_7⟩
Chapitre d'ouvrage hal-01995852 v1

Modélisation de la diffusion-réaction dans les milieux intracellulaires encombrés

Hugues Berry
Glade, Nicolas and Stéphanou, Angélique. Le vivant discret et continu, Editions Matériologiques, pp.241-266, 2013, 978-2-919694-24-2
Chapitre d'ouvrage hal-00858738 v1

De la modélisation comme poésie. La modélisation de systèmes biologiques complexes vue par deux modélisateurs

Hugues Berry , Guillaume Beslon
Franck Varenne and Marc Silberstein. Modéliser & simuler. Epistémologies et pratiques de la modélisation et de la simulation, 1, Editions Matériologiques, Paris, 2013, 978-2-919694-19-8
Chapitre d'ouvrage hal-00815550 v1