jean-baptiste masson

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Optimal transport unlocks end-to-end learning for single-molecule localization

Romain Seailles , Jean-Baptiste Masson , Jean Ponce , Julien Mairal

ICLR 2026: The Fourteenth International Conference on Learning Representations, Apr 2026, Rio de Janeiro, Brazil. 2026

Proceedings/Recueil des communications hal-05397581v2
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Approximate information maximization for bandit games

Alex Barbier-Chebbah , Christian L. Vestergaard , Jean-Baptiste Masson , Etienne Boursier

28th International Conference on Artificial Intelligence and Statistics, May 2025, Phuket, Thailand. pp.316-324

Communication dans un congrès hal-04246907v5

Calibrating optical tweezers with Bayesian inference (Poster)

Maximilian U. Richly , Silvan Türkcan , Antoine Le Gall , Nicolas Fiszman , Jean-Baptiste Masson et al.

58th Annual Meeting - Biophysical Society, Feb 2014, San Francisco, United States

Communication dans un congrès hal-01709073v1

Optical tweezers calibration with Bayesian inference (Orale)

Silvan Türkcan , Maximilian U. Richly , Antoine Le Gall , Nicolas Fiszman , Jean-Baptiste Masson et al.

SPIE NanoScience + Engineering 2014, Conference on Optical Trapping and Optical Micromanipulation XI, Aug 2014, San Diego, United States. pp.UNSP 916415

Communication dans un congrès hal-01664147v1

Hole depth dependence of the extraordinary electromagnetic transmission in the terahertz domain

A. Podzorov , J.-B. Masson , Guilhem Gallot

2009 34th International Conference on Infrared, Millimeter, and Terahertz Waves (IORMMW-THz 2009), Sep 2009, Busan, South Korea. pp.1-2, ⟨10.1109/ICIMW.2009.5324713⟩

Communication dans un congrès hal-02374375v1
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Photorealistic rendering of fetal faces from raw magnetic resonance imaging data

Thomas Blanc , Charlotte Godard , David Grevent , Mohamed El Beheiry , Laurent Salomon et al.

Ultrasound in Obstetrics and Gynecology = Ultrasound in Obstetrics & Gynecology, In press, ⟨10.1002/uog.29165⟩

Article dans une revue hal-05009620v1
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Competition between glycine and GABAA receptors for gephyrin controls their equilibrium populations at inhibitory synapses

Dorota Kostrz , Stephanie A Maynard , Serena Camuso , Clemens Schulte , François Laurent et al.

Proceedings of the National Academy of Sciences of the United States of America, 2025, 122 (52), pp.e2500226122. ⟨10.1073/pnas.2500226122⟩

Article dans une revue hal-05446453v2
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Virtual reality-augmented differentiable simulations for digital twin applications in surgical planning

Robin Cremese , Charlotte Godard , Alexis Bénichou , Thomas Blanc , Iwan Quemada et al.

Scientific Reports, 2025, 15 (1), pp.24377. ⟨10.1038/s41598-025-99608-2⟩

Article dans une revue pasteur-05337495v1
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Plasticity of ventricle position after heart looping in heterotaxy with right isomerism

Audrey Desgrange , Emeline Perthame , Carmen Marchiol , Daphné Madec , Laurent Guillemot et al.

Science Advances , 2025, 11 (38), pp.eads8192. ⟨10.1126/sciadv.ads8192⟩

Article dans une revue hal-05271935v1
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Statistical signature of subtle behavioural changes in large-scale behavioural assays

Alexandre Blanc , François Laurent , Alex Barbier--Chebbah , Benjamin Cocanougher , Benjamin M.W. Jones et al.

PLoS Computational Biology, 2025, 21 (4), pp.e1012990. ⟨10.1371/journal.pcbi.1012990⟩

Article dans une revue hal-04670703v1
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Neural circuits underlying context-dependent competition between defensive actions in Drosophila larvae

Maxime Lehman , Chloé Barré , Md Amit Hasan , Benjamin Flament , Sandra Autran et al.

Nature Communications, 2025, 16 (1), pp.1120. ⟨10.1038/s41467-025-56185-2⟩

Article dans une revue hal-04918380v1
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Feeding state-dependent neuropeptidergic modulation of reciprocally interconnected inhibitory neurons biases sensorimotor decisions in Drosophila

Eloïse de Tredern , Dylan Manceau , Alexandre Blanc , Abhijit Parameswaran , Panagiotis Sakagiannis et al.

Nature Communications, 2025, 16 (1), pp.8198. ⟨10.1038/s41467-025-61805-y⟩

Article dans une revue hal-05237474v1

Multi-Center Fetal Brain Tissue Annotation (FeTA) Challenge 2022 Results

Kelly Payette , Céline Steger , Roxane Licandro , Priscille de Dumast , Hongwei Bran Li et al.

IEEE Transactions on Medical Imaging, 2024, 44, pp.1257-1272. ⟨10.48550/arXiv.2402.09463⟩

Article dans une revue hal-05009633v1
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Compression-based inference of network motif sets

Alexis Bénichou , Jean-Baptiste Masson , Christian L. Vestergaard

PLoS Computational Biology, 2024, 20 (10), pp.e1012460. ⟨10.1371/journal.pcbi.1012460⟩

Article dans une revue hal-04733164v2

Confinement energy landscape classification reveals membrane receptor nano-organization mechanisms

Chao Yu , Maximilian Richly , Thi Thuy Hoang , Mohammed El Beheiry , Silvan Türkcan et al.

Biophysical Journal, 2024, 123 (13), pp.1882-1895. ⟨10.1016/j.bpj.2024.06.001⟩

Article dans une revue hal-04629849v1
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Motion of VAPB molecules reveals ER–mitochondria contact site subdomains

Christopher Obara , Jonathon Nixon-Abell , Andrew Moore , Federica Riccio , David Hoffman et al.

Nature, 2024, 626 (7997), pp.169-176. ⟨10.1038/s41586-023-06956-y⟩

Article dans une revue hal-04629851v1
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LarvaTagger: Manual and automatic tagging of Drosophila larval behaviour

François Laurent , Alexandre Blanc , Lilly May , Lautaro Gándara , Benjamin Cocanougher et al.

Bioinformatics, 2024, 40 (7), pp.btae441. ⟨10.1093/bioinformatics/btae441⟩

Article dans une revue pasteur-04629791v1
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Simulation-based inference for non-parametric statistical comparison of biomolecule dynamics

Hippolyte Verdier , François Laurent , Alhassan Cassé , Christian L. Vestergaard , Christian Specht et al.

PLoS Computational Biology, 2023, 19 (2), pp.e1010088. ⟨10.1371/journal.pcbi.1010088⟩

Article dans une revue hal-03876446v2
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Fast-track virtual reality software to facilitate 3-dimensional reconstruction in congenital heart disease

Francesco Bertelli , Francesca Raimondi , Charlotte Godard , Emma Bergonzoni , Claudia Cattapan et al.

Interdisciplinary Cardiovascular and Thoracic Surgery, 2023, 36 (6), pp.ivad087. ⟨10.1093/icvts/ivad087⟩

Article dans une revue hal-04629852v1
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Breast Magnetic Resonance Image Analysis for Surgeons Using Virtual Reality: A Comparative Study

Mohamed El Beheiry , Thomas Gaillard , Noémie Girard , Lauren Darrigues , Marie Osdoit et al.

JCO Clinical Cancer Informatics, 2023, 5, pp.1127-1133. ⟨10.1200/CCI.21.00048⟩

Article dans une revue pasteur-04008404v1
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Management of ischiopagus twin separation with a focus on W–S incision design

François Ruiz , Cecilia Neiva-Vaz , Marie-Paule Vazquez , Jean-Baptiste Masson , Mohammed El Beheiry et al.

Journal of Pediatric Surgery Case Reports, 2023, 64, pp.101747. ⟨10.1016/j.epsc.2020.101747⟩

Article dans une revue pasteur-04008441v1
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Approximate information for efficient exploration-exploitation strategies

Alex Barbier-Chebbah , Christian L. Vestergaard , Jean-Baptiste Masson

Physical Review E , 2023, 109 (5), pp.L052105. ⟨10.1103/PhysRevE.109.L052105⟩

Article dans une revue hal-04147006v1

Fast‐track virtual reality for cardiac imaging in congenital heart disease

Francesca Raimondi , Vladimiro Vida , Charlotte Godard , Francesco Bertelli , Elena Reffo et al.

Journal of Cardiac Surgery, 2023, 36 (7), pp.2598-2602. ⟨10.1111/jocs.15508⟩

Article dans une revue pasteur-04008456v1
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High-throughput automated methods for classical and operant conditioning of Drosophila larvae

Elise Croteau-Chonka , Michael Clayton , Lalanti Venkatasubramanian , Samuel Harris , Benjamin Mw Jones et al.

eLife, 2022, 11, pp.e70015. ⟨10.7554/eLife.70015⟩

Article dans une revue hal-04629854v1
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Towards Human in the Loop Analysis of Complex Point Clouds: Advanced Visualizations, Quantifications, and Communication Features in Virtual Reality

Thomas Blanc , Hippolyte Verdier , Louise Regnier , Guillaume Planchon , Corentin Guérinot et al.

Frontiers in Bioinformatics, 2022, 1, ⟨10.3389/fbinf.2021.775379⟩

Article dans une revue hal-03795768v1
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New Approach to Accelerated Image Annotation by Leveraging Virtual Reality and Cloud Computing

Corentin Guérinot , Valentin Marcon , Charlotte Godard , Thomas Blanc , Hippolyte Verdier et al.

Frontiers in Bioinformatics, 2022, 1, pp.777101. ⟨10.3389/fbinf.2021.777101⟩

Article dans une revue hal-03795778v1
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TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments

François Laurent , Hippolyte Verdier , Maxime Duval , Alexander Serov , Christian L Vestergaard et al.

Bioinformatics, 2022, 38 (11), pp.3149-3150. ⟨10.1093/bioinformatics/btac291⟩

Article dans une revue pasteur-03695448v1
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Variational inference of fractional Brownian motion with linear computational complexity

Hippolyte Verdier , François Laurent , Alhassan Cassé , Christian L Vestergaard , Jean-Baptiste Masson

Physical Review E , 2022, 106, pp.055311. ⟨10.1103/PhysRevE.106.055311⟩

Article dans une revue hal-03612918v3

Hematopoietic stem cell transplantation chemotherapy causes microglia senescence and peripheral macrophage engraftment in the brain

Kurt A Sailor , George Agoranos , Sergio López-Manzaneda , Satoru Tada , Beatrix Gillet-Legrand et al.

Nature Medicine, 2022, ⟨10.1038/s41591-022-01691-9⟩

Article dans une revue pasteur-03588683v1
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Challenges of intracellular visualization using virtual and augmented reality

Cesar Augusto Valades-Cruz , Ludovic Leconte , Gwendal Fouché , Thomas Blanc , Nathan van Hille et al.

Frontiers in Bioinformatics, 2022, 2, pp.997082:1-997082:9. ⟨10.3389/fbinf.2022.997082⟩

Article dans une revue hal-03790274v1
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Dynamic spatiotemporal coordination of neural stem cell fate decisions occurs through local feedback in the adult vertebrate brain

Nicolas Dray , Laure Mancini , Udi Binshtok , Felix Cheysson , Willy Supatto et al.

Cell Stem Cell, 2021, 28 (8), pp.1-16. ⟨10.1016/j.stem.2021.03.014⟩

Article dans une revue hal-03287988v1
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Partial breast resection for multifocal lower quadrant breast tumour using virtual reality

Enora Laas , Mohamed El Beheiry , Jean-Baptiste Masson , Caroline Malhaire

BMJ Case Reports, 2021, 14 (3), pp.e241608. ⟨10.1136/bcr-2021-241608⟩

Article dans une revue pasteur-04008370v1

Objective comparison of methods to decode anomalous diffusion

Gorka Muñoz-Gil , Giovanni Volpe , Miguel Angel Garcia-March , Erez Aghion , Aykut Argun et al.

Nature Communications, 2021, 12 (1), pp.6253. ⟨10.1038/s41467-021-26320-w⟩

Article dans une revue hal-04670713v1
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Learning physical properties of anomalous random walks using graph neural networks

Hippolyte Verdier , Maxime Duval , François Laurent , Alhassan Cassé , Christian L. Vestergaard et al.

Journal of Physics A: Mathematical and Theoretical, 2021, 54 (23), pp.234001. ⟨10.1088/1751-8121/abfa45⟩

Article dans une revue pasteur-03150190v2
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Identifying neural substrates of competitive interactions and sequence transitions during mechanosensory responses in Drosophila

Jean-Baptiste Masson , François Laurent , Albert Cardona , Chloé Barré , Nicolas Skatchkovsky et al.

PLoS Genetics, 2020, 16 (2), pp.e1008589. ⟨10.1371/journal.pgen.1008589⟩

Article dans une revue hal-02519739v1
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Genuage: visualize and analyze multidimensional single-molecule point cloud data in virtual reality

Thomas Blanc , Mohamed El Beheiry , Clément Caporal , Jean-Baptiste Masson , Bassam Hajj

Nature Methods, 2020, 17 (11), pp.1100 - 1102. ⟨10.1038/s41592-020-0946-1⟩

Article dans une revue hal-02989365v1
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DIVA, a 3D virtual reality platform, improves undergraduate craniofacial trauma education

Jebrane Bouaoud , Mohamed El Beheiry , Eve Jablon , Thomas Schouman , Chloé Bertolus et al.

Journal of Stomatology, Oral and Maxillofacial Surgery, 2020, ⟨10.1016/j.jormas.2020.09.009⟩

Article dans une revue hal-02974248v1
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Statistical Tests for Force Inference in Heterogeneous Environments

Alexander S Serov , François Laurent , Charlotte Floderer , Karen Perronet , Cyril Favard et al.

Scientific Reports, 2020, 10 (1), pp.3783. ⟨10.1038/s41598-020-60220-1⟩

Article dans une revue pasteur-02865729v1
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Mapping spatio-temporal dynamics of single biomolecules in living cells

François Laurent , Charlotte Floderer , Cyril Favard , Delphine Muriaux , Jean-Baptiste Masson et al.

Physical Biology, 2020, 17 (1), pp.015003. ⟨10.1088/1478-3975/ab5167⟩

Article dans une revue pasteur-02408362v1
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DIVA: Natural Navigation inside 3D Images Using Virtual Reality

Mohamed El Beheiry , Charlotte Godard , Cĺement Caporal , Valentin Marcon , Cecilia Ostertag et al.

Journal of Molecular Biology, 2020, 432 (16), pp.4745-4749. ⟨10.1016/j.jmb.2020.05.026⟩

Article dans une revue pasteur-02872140v1
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Virtual Reality: Beyond Visualization

Mohamed El Beheiry , Sébastien Doutreligne , Clément Caporal , Cecilia Ostertag , Maxime Dahan et al.

Journal of Molecular Biology, 2019, 431 (7), pp.1315-1321. ⟨10.1016/j.jmb.2019.01.033⟩

Article dans une revue pasteur-02872135v1
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Single molecule localisation microscopy reveals how HIV-1 Gag proteins sense membrane virus assembly sites in living host CD4 T cells

Charlotte Floderer , Jean-Baptiste Masson , Elise Boilley , Sonia Georgeault , Peggy Merida et al.

Scientific Reports, 2018, 8 (1), pp.16283. ⟨10.1038/s41598-018-34536-y⟩

Article dans une revue pasteur-01930758v1
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Olfactory coding in the turbulent realm

Vincent Jacob , Christelle Monsempes , Jean-Pierre Rospars , Jean-Baptiste Masson , Philippe Lucas

PLoS Computational Biology, 2017, 13 (12), ⟨10.1371/journal.pcbi.1005870⟩

Article dans une revue hal-02624610v1
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Gradients of Rac1 Nanoclusters Support Spatial Patterns of Rac1 Signaling

Amanda Remorino , Simon de Beco , Fanny Cayrac , Fahima Di Federico , Gaetan Cornilleau et al.

Cell Reports, 2017, 21 (7), pp.1922-1935. ⟨10.1016/j.celrep.2017.10.069⟩

Article dans une revue hal-01637091v1

Competitive Disinhibition Mediates Behavioral Choice and Sequences in Drosophila

Tihana Jovanic , Casey Martin Schneider-Mizell , Mei Shao , Jean-Baptiste Masson , Gennady Denisov et al.

Cell, 2016, 167 (3), pp.858-870.e19. ⟨10.1016/j.cell.2016.09.009⟩

Article dans une revue hal-04194755v1

A Primer on the Bayesian Approach to High-Density Single-Molecule Trajectories Analysis

Mohamed El beheiry , Silvan Türkcan , Maximilian u. Richly , Antoine Triller , Antigone Alexandrou et al.

Biophysical Journal, 2016, 110 (6), pp.1209 - 1215. ⟨10.1016/j.bpj.2016.01.018⟩

Article dans une revue hal-01421582v1

Investigating the Cell Membrane via Single Particle Tracking, Bayesian Inference and Hydrodynamic Force Application

Maximilian Richly , Silvan Türkcan , Cédric Bouzigues , Michel R. Popoff , Jean-Baptiste Masson et al.

Biophysical Journal, 2014, 106 (2), p633a. ⟨10.1016/j.bpj.2013.11.3504⟩

Article dans une revue hal-01048723v1
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Using insect electroantennogram sensors on autonomous robots for olfactory searches

Dominique Martinez , Lotfi Arhidi , Elodie Demondion , Jean-Baptiste Masson , Philippe P. Lucas

Journal of visualized experiments : JoVE, 2014, 90 (90), pp.e51704. ⟨10.3791/51704⟩

Article dans une revue hal-01111341v1
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Olfactory receptor neuron coding in the turbulent realm

Jean-Baptiste Masson , Christelle Monsempes , Jean-Pierre Rospars , Philippe Lucas

BMC Neuroscience, 2013, 14 (Suppl 1), pp.P315. ⟨10.1186/1471-2202-14-S1-P315⟩

Article dans une revue pasteur-00842294v1
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Probing membrane protein interactions with their lipid raft environment using single-molecule tracking and Bayesian inference analysis.

Silvan Türkcan , Maximilian U. Richly , Antigoni Alexandrou , Jean-Baptiste Masson

PLoS ONE, 2013, 8 (1), pp.e53073. ⟨10.1371/journal.pone.0053073⟩

Article dans une revue hal-00817161v1
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Calibrating optical tweezers with Bayesian inference

Maximilian U. Richly , Silvan Türkcan , Antoine Le Gall , Nicolas Fiszman , Jean-Baptiste Masson et al.

Optics Express, 2013, 21 (25), pp.31578. ⟨10.1364/OE.21.031578⟩

Article dans une revue hal-00918884v1
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A Bayesian Inference Scheme to Extract Diffusivity and Potential Fields from Confined Single-Molecule Trajectories

Silvan Tuerkcan , Antigoni Alexandrou , Jean-Baptiste Masson

Biophysical Journal, 2012, 102 (10), pp.2288-2298. ⟨10.1016/j.bpj.2012.01.063⟩

Article dans une revue hal-00817167v1

Inflammatory chemokines direct and restrict leukocyte migration within live tissues as glycan-bound gradients.

Milka Sarris , Jean-Baptiste Masson , Damien Maurin , Lieke M van Der Aa , Pierre Boudinot et al.

Current Biology, 2012, 22 (24), pp.2375-82. ⟨10.1016/j.cub.2012.11.018⟩

Article dans une revue hal-00880492v1

Observing the Confinement Potential of Bacterial Pore-Forming Toxin Receptors Inside Rafts with Nonblinking Eu3+-Doped Oxide Nanoparticles

Silvan Türkcan , Jean-Baptiste Masson , Didier Casanova , Geneviève Mialon , Thierry Gacoin et al.

Biophysical Journal, 2012, 102 (10), pp.2299-2308. ⟨10.1016/j.bpj.2012.03.072⟩

Article dans une revue hal-00865949v1
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Inferring maps of forces inside cell membrane microdomains

J.-B. Masson , Didier Casanova , Silvan Türkcan , G. Voisinne , Michel Popoff et al.

Physical Review Letters, 2009, 102 (4), pp.48103. ⟨10.1103/PhysRevLett.102.048103⟩

Article dans une revue hal-00811680v1
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A model for thermal exchange in axons during action potential propagation.

Jean-Baptiste Masson , Guilhem Gallot

European Biophysics Journal, 2008, 37 (6), pp.1001-1006. ⟨10.1007/s00249-008-0329-5⟩

Article dans une revue inserm-00319737v1

FROM MOLECULES TO BEHAVIOR: A NEURAL CIRCUIT MODEL OF ALZHEIMER’S DISEASE

Anqi Zhou , Tihana Jovanic , Jean-Baptiste Masson

IBRO 11th World Congress of Neuroscience, Sep 2023, Grenade (Espagne), Spain. Elsevier, IBRO Neuroscience Reports, 15 (S1), pp.S665, 2023, ⟨10.1016/j.ibneur.2023.08.1332⟩

Poster de conférence hal-04700925v1