Jean Peccoud

53
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Publications

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Phylogenetic relatedness rather than aquatic habitat fosters horizontal transfer of transposable elements in animals

Héloïse Muller , Rosina Savisaar , Jean Peccoud , Sylvain Charlat , Clément Gilbert
Genome Research, 2025, 35, pp.1-12. ⟨10.1101/gr.280432.125⟩
Article dans une revue hal-04899724 v2

STRyper: A macOS application for microsatellite genotyping and chromatogram management

Jean Peccoud
PLoS ONE, 2025, 20 (2), pp.e0318806. ⟨10.1371/journal.pone.0318806⟩
Article dans une revue hal-04963201 v1
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The genetics of host plant acceptance in pea aphids

Isobel Eyres , Hannah Fenton , Jean-Christophe Simon , Jean Peccoud , Julia Ferrari et al.
Molecular Ecology, 2025, 34, pp.e17795. ⟨10.1111/mec.17795⟩
Article dans une revue hal-05156900 v1
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Identification of a sex-determining region potentially involved in resolving genetic conflicts over sex ratio

Baptiste Lhéraud , Yann Dussert , Mohamed Amine Chebbi , Isabelle Giraud , Richard Cordaux et al.
Biology Letters, 2025, 21 (10), pp.0287. ⟨10.1098/rsbl.2025.0287⟩
Article dans une revue hal-05325843 v1
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Temporal stability of sex ratio distorter prevalence in natural populations of the isopod Armadillidium vulgare

Sylvine Durand , Romain Pigeault , Isabelle Giraud , Anaïs Loisier , Nicolas Bech et al.
Heredity, 2024, 133 (5), pp.287-297. ⟨10.1038/s41437-024-00713-1⟩
Article dans une revue hal-04684140 v1
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Contrasting Evolutionary Patterns Between Sexual and Asexual Lineages in a Genomic Region Linked to Reproductive Mode Variation in the pea aphid

Maud Rimbault , Fabrice Legeai , Jean Peccoud , Lucie Mieuzet , Elsa Call et al.
Genome Biology and Evolution, 2023, 15 (9), pp.evad168. ⟨10.1093/gbe/evad168⟩
Article dans une revue hal-04232477 v1
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Investigating Wolbachia symbiont-mediated host protection against a bacterial pathogen using a natural Wolbachia nuclear insert

Cybèle Prigot-Maurice , Baptiste Lheraud , Samuel Guéritault , Sophie Beltran-Bech , Richard Cordaux et al.
Journal of Invertebrate Pathology, 2023, 197, pp.107893. ⟨10.1016/j.jip.2023.107893⟩
Article dans une revue hal-04240965 v1
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Heterogeneous distribution of sex ratio distorters in natural populations of the isopod Armadillidium vulgare.

Sylvine Durand , Baptiste Lheraud , Isabelle Giraud , Nicolas Bech , Frédéric Grandjean et al.
Biology Letters, 2023, 19 (1), pp.20220457. ⟨10.1098/rsbl.2022.0457⟩
Article dans une revue hal-03959969 v1
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Masculinization of the X-chromosome in aphid soma and gonads

Julie Jaquiéry , Jean-Christophe Simon , Stéphanie Robin , Gautier Richard , Jean Peccoud et al.
Peer Community Journal, 2022, 2, pp.e53. ⟨10.24072/pcjournal.166⟩
Article dans une revue hal-03999192 v1
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Characterization of a Sex-Determining Region and Its Genomic Context via Statistical Estimates of Haplotype Frequencies in Daughters and Sons Sequenced in Pools

Richard Cordaux , Mohamed Amine Chebbi , Isabelle Giraud , David R.J. Pleydell , Jean Peccoud
Genome Biology and Evolution, 2021, 13 (8), ⟨10.1093/gbe/evab121⟩
Article dans une revue hal-03376524 v1
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Occurrence data for the two cryptic species of Cacopsylla pruni (Hemiptera: Psylloidea)

Nicolas Sauvion , Jean Peccoud , Christine N. Meynard , David Ouvrard
Biodiversity Data Journal, 2021, 9, pp.e68860. ⟨10.3897/BDJ.9.e68860⟩
Article dans une revue (data paper) hal-03230951 v2
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Monitoring Insect Transposable Elements in Large Double-Stranded DNA Viruses Reveals Host-to-Virus and Virus-to-Virus Transposition

Vincent Loiseau , Jean Peccoud , Clémence Bouzar , Sandra Guillier , Jiangbin Fan et al.
Molecular Biology and Evolution, 2021, 38 (9), pp.3512-3530. ⟨10.1093/molbev/msab198⟩
Article dans une revue hal-03376529 v1
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Transposable Elements and the Evolution of Insects

Clément Gilbert , Jean Peccoud , Richard Cordaux
Annual Review of Entomology, 2021, 66 (1), pp.355-372. ⟨10.1146/annurev-ento-070720-074650⟩
Article dans une revue hal-03376520 v1
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Experimental evidence of Wolbachia introgressive acquisition between terrestrial isopod subspecies

Nicolas Bech , Sophie Beltran-Bech , Cassandre Chupeau , Jean Peccoud , Magali Thierry et al.
Current zoology, 2021, 67 (4), pp.455 - 464. ⟨10.1093/cz/zoaa078⟩
Article dans une revue hal-03322986 v1
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Multi-scale spatial genetic structure of the vector-borne pathogen 'Candidatus phytoplasma prunorum' in orchards and in wild habitats

Véronique Marie-Jeanne , François Bonnot , Gaël Thébaud , Jean Peccoud , Gérard Labonne et al.
Scientific Reports, 2020, 10 (1), pp.5002. ⟨10.1038/s41598-020-61908-0⟩
Article dans une revue hal-02548441 v1
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Horizontal transfer and evolution of transposable elements in vertebrates

Hua-Hao Zhang , Jean Peccoud , Min-Rui-Xuan Xu , Xiao-Gu Zhang , Clement Gilbert
Nature Communications, 2020, 11, pp.1362. ⟨10.1038/s41467-020-15149-4⟩
Article dans une revue hal-03020048 v1

The Genome of Armadillidium vulgare (Crustacea, Isopoda) Provides Insights into Sex Chromosome Evolution in the Context of Cytoplasmic Sex Determination

Mohamed Amine Chebbi , Thomas Becking , Bouziane Moumen , Isabelle Giraud , Clément Gilbert et al.
Molecular Biology and Evolution, 2019, 36 (4), pp.727-741. ⟨10.1093/molbev/msz010⟩
Article dans une revue hal-02341008 v1
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Sex chromosomes control vertical transmission of feminizing Wolbachia symbionts in an isopod

Thomas Becking , Mohamed Amine Chebbi , Isabelle Giraud , Bouziane Moumen , Tiffany Laverré et al.
PLoS Biology, 2019, 17 (10), pp.e3000438. ⟨10.1371/journal.pbio.3000438⟩
Article dans une revue hal-03020063 v1
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Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot

Daphné Reiss , Gladys Mialdea , Vincent Miele , Damien M. de Vienne , Jean Peccoud et al.
PLoS Genetics, 2019, 15 (2), pp.e1007965. ⟨10.1371/journal.pgen.1007965⟩
Article dans une revue hal-02140494 v1
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Disentangling the Causes for Faster-X Evolution in Aphids

Julie Jaquiéry , Jean Peccoud , Tiphaine Ouisse , Fabrice Legeai , Nathalie Prunier Leterme et al.
Genome Biology and Evolution, 2018, 10 (2), pp.507-520. ⟨10.1093/gbe/evy015⟩
Article dans une revue hal-03276874 v1
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Fast Evolution and Lineage-Specific Gene Family Expansions of Aphid Salivary Effectors Driven by Interactions with Host-Plants

Hélène Boulain , Fabrice Legeai , Endrick Guy , Stéphanie Morliere , Nadine Douglas et al.
Genome Biology and Evolution, 2018, 10 (6), pp.1554-1572. ⟨10.1093/gbe/evy097⟩
Article dans une revue hal-01891942 v1
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A Survey of Virus Recombination Uncovers Canonical Features of Artificial Chimeras Generated During Deep Sequencing Library Preparation

Jean Peccoud , Sebastian Lequime , Isabelle Moltini-Conclois , Isabelle Giraud , Louis Lambrechts et al.
G3, 2018, 8 (4), pp.1129-1138. ⟨10.1534/g3.117.300468⟩
Article dans une revue hal-01778157 v1

Analyzing Horizontal Transfer of Transposable Elements on a Large Scale: Challenges and Prospects

Jean Peccoud , Richard Cordaux , Clément Gilbert
BioEssays, 2018, 40 (2), ⟨10.1002/bies.201700177⟩
Article dans une revue hal-01696095 v1

Identifying genomic hotspots of differentiation and candidate genes involved in the adaptive divergence of pea aphid host races

Pierre Nouhaud , Mathieu Gautier , Anaïs Gouin , Julie Jaquiéry , Jean Peccoud et al.
Molecular Ecology, 2018, 27 (16), pp.3287 - 3300. ⟨10.1111/mec.14799⟩
Article dans une revue hal-01892027 v1

A framework for estimating the effects of sequential reproductive barriers: Implementation using Bayesian models with field data from cryptic species

Jean Peccoud , David R.J. Pleydell , Nicolas Sauvion
Evolution - International Journal of Organic Evolution, 2018, 72 (11), pp.2503-2512. ⟨10.1111/evo.13595⟩
Article dans une revue hal-01976412 v1

Rapid evolution of aphid pests in agricultural environments

Jean-Christophe Simon , Jean Peccoud
Current Opinion in Insect Science, 2018, 26, pp.17 - 24. ⟨10.1016/j.cois.2017.12.009⟩
Article dans une revue (article de synthèse) hal-01699353 v1
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Comparative analysis of spatial genetic structure in an ant-plant symbiosis reveals a tension zone and highlights speciation processes in tropical Africa

Rumsaïs Blatrix , Jean Peccoud , Céline Born , Finn Piatscheck , Laure Benoit et al.
Journal of Biogeography, 2017, 44 (8), pp.1856-1868. ⟨10.1111/jbi.12972⟩
Article dans une revue hal-02315946 v1
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Massive horizontal transfer of transposable elements in insects.

Jean Peccoud , Vincent Loiseau , Richard Cordaux , Clément Gilbert
Proceedings of the National Academy of Sciences of the United States of America, 2017, 114 (18), pp.4721-4726. ⟨10.1073/pnas.1621178114⟩
Article dans une revue hal-01513704 v1
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Untangling Heteroplasmy, Structure, and Evolution of an Atypical Mitochondrial Genome by PacBio Sequencing.

Jean Peccoud , Mohamed Amine Chebbi , Alexandre Cormier , Bouziane Moumen , Clément Gilbert et al.
Genetics, 2017, 207 (1), pp.269-280. ⟨10.1534/genetics.117.203380⟩
Article dans une revue hal-01586985 v1
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Continuous Influx of Genetic Material from Host to Virus Populations.

Clément Gilbert , Jean Peccoud , Aurélien Chateigner , Bouziane Moumen , Richard Cordaux et al.
PLoS Genetics, 2016, 12 (2), pp.e1005838. ⟨10.1371/journal.pgen.1005838⟩
Article dans une revue hal-01266766 v1

Genetic characterisation of new host-specialised biotypes and novel associations with bacterial symbionts in the pea aphid complex

Jean Peccoud , Frédérique Maheo , Manon de La Huerta , Cindy Laurence , Jean-Christophe Simon
Insect conservation and diversity, 2015, 8 (5), pp.484-492. ⟨10.1111/icad.12131⟩
Article dans une revue istex hal-01252653 v1

Genomics of adaptation to host-plants in herbivorous insects

Jean-Christophe Simon , Emmanuelle d'Alencon , Endrick Guy , Emmanuelle Jacquin-Joly , Julie Jaquiéry et al.
Briefings in Functional Genomics and Proteomics, 2015, 14 (6), pp.413-423. ⟨10.1093/bfgp/elv015⟩
Article dans une revue hal-03419843 v1

Widespread host-dependent hybrid unfitness in the pea aphid species complex

Jean Peccoud , Manon de La Huerta , Joel Bonhomme , Cindy Laurence , Yannick Outreman et al.
Evolution - International Journal of Organic Evolution, 2014, 68 (10), pp.2983-2995. ⟨10.1111/evo.12478⟩
Article dans une revue hal-01208754 v1
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Genetic control of contagious asexuality in the pea aphid

Julie Jaquiéry , Jean Peccoud , Tiphaine Ouisse , Fabrice Legeai , Nathalie Prunier-Leterme et al.
PLoS Genetics, 2014, 10 (12), pp.e1004838. ⟨10.1371/journal.pgen.1004838⟩
Article dans une revue hal-01701165 v1

Inheritance patterns of secondary symbionts during sexual reproduction of pea aphid biotypes

Jean Peccoud , Joel Bonhomme , Frédérique Maheo , Manon de La Huerta , Olivier Cosson et al.
Insect Science, 2014, 21 (3), pp.291-300. ⟨10.1111/1744-7917.12083⟩
Article dans une revue istex hal-01208708 v1

Genomic regions repeatedly involved in divergence among plant-specialized pea aphid biotypes

Pierre Nouhaud , Jean Peccoud , Frédérique Mahéo , Lucie Mieuzet , Julie Jaquiéry et al.
Journal of Evolutionary Biology, 2014, 27 (9), pp.2013-2020. ⟨10.1111/jeb.12441⟩
Article dans une revue hal-01178940 v1
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Molecular tests to assign individuals within the Cacospylla pruni complex

Jean Peccoud , Gerard Labonne , Nicolas Sauvion
PLoS ONE, 2013, 8 (8), pp.e72454. ⟨10.1371/journal.pone.0072454⟩
Article dans une revue hal-01922692 v1

Horizontally Transmitted Symbionts and Host Colonization of Ecological Niches

Lee M. Henry , Jean Peccoud , Jean-Christophe Simon , Jarrod D. Hadfield , Martin J. C. Maiden et al.
Current Biology, 2013, 23 (17), pp.1713 - 1717. ⟨10.1016/j.cub.2013.07.029⟩
Article dans une revue hal-02652552 v1

Permanent genetic resources added to Molecular Ecology Resources database 1 December 2011 - 31 January 2012.

M.C. Arias , Emilie Arnoux , James J. Bell , Abel Bernadou , Giorgia Bino et al.
Molecular Ecology Resources, 2012, 12 (3), pp.570-572. ⟨10.1111/j.1755-0998.2012.03133.x⟩
Article dans une revue istex hal-00687667 v1
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Permanent genetic resources added to molecular ecology resources database 1 august 2011-30 september 2011

S.W. A'Hara , Paul Amouroux , Emily Argo , Arman Avand-Faghih , Ashoktaru Barat et al.
Molecular Ecology Resources, 2012, 12 (1), pp.185-189. ⟨10.1111/j.1755-0998.2011.03088.x⟩
Article dans une revue hal-02653040 v1

The pea aphid complex as a model of ecological speciation

Jean Peccoud , Jean-Christophe Simon
Ecological Entomology, 2010, 35 (s1), pp.119-130. ⟨10.1111/j.1365-2311.2009.01147.x⟩
Article dans une revue hal-02662956 v1

Evolutionary history of aphid-plant associations and their role in aphid diversification.

J. Peccoud , Jean-Christophe Simon , C. von Dohlen , A. Coeur d'Acier , Manuel Plantegenest et al.
Comptes Rendus. Biologies, 2010, 333 (6-7), pp.474-87. ⟨10.1016/j.crvi.2010.03.004⟩
Article dans une revue istex hal-00729508 v1

Post-Pleistocene radiation of the pea aphid complex revealed by rapidly evolving endosymbionts

Jean Peccoud , Jean-Christophe Simon , Heather Mclaughlin , Nancy Moran
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (38), pp.16315-16320. ⟨10.1073/pnas.0905129106⟩
Article dans une revue hal-02668379 v1

A continuum of genetic divergence from sympatric host races to species in the pea aphid complex

Jean Peccoud , Anthony Ollivier , Manuel Plantegenest , Jean-Christophe Simon
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (18), pp.7495-7500. ⟨10.1073/pnas.0811117106⟩
Article dans une revue hal-02667909 v1

Host range expansion of an introduced insect pest through multiple colonizations of specialized clones.

J. Peccoud , C.C. Figueroa , A.X. Silva , C.C. Ramirez , L. Mieuzet et al.
Molecular Ecology, 2008, 17 (21), pp.4608-18. ⟨10.1111/j.1365-294X.2008.03949.x⟩
Article dans une revue hal-00729150 v1

Caractérisation d'espèces cryptiques du psylle Cacopsylla pruni, insecte vecteur d'une maladie des Prunus

Nicolas Sauvion , Jean Peccoud , David Pleydell , Véronique Marie-Jeanne , Patrick Limon et al.
Ecologie 2010, session " Adaptation des bioagresseurs de plantes à leur environnement biotique et abiotique ", Sep 2010, Montpellier, France
Communication dans un congrès hal-01927485 v1

A continuum of genetic divergence from sympatric host races to species in the pea aphid complex

J. Peccoud , A. Ollivier , Manuel Plantegenest , Jean-Christophe Simon
Proceedings of the National Academy of Sciences of the United States of America, May 2009, Texas (US), United States. pp.7495-7500, ⟨10.1073/pnas.0811117106⟩
Communication dans un congrès hal-00729934 v1