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Joan Alexis Glaunès

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A Diffeomorphic Vector Field Approach to Analyze the Thickness of the Hippocampus from 7T MRI

Alexis Guyot , Ana B Graciano Fouquier , Emilie Gerardin , Marie Chupin , Joan Glaunès
IEEE Transactions on Biomedical Engineering, 2021, 68 (2), pp.393-403. ⟨10.1109/TBME.2020.2999941⟩
Journal articles hal-02359660v2
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Kernel Operations on the GPU, with Autodiff,without Memory Overflows

Benjamin Charlier , Jean Feydy , Joan Glaunès , François-David Collin , Ghislain Durif
Journal of Machine Learning Research, 2021, 22 (74), pp.1-6
Journal articles hal-02517462v2
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Representation of Surfaces with Normal Cycles. Application to Surface Registration

Pierre Roussillon , Joan Glaunès
Journal of Mathematical Imaging and Vision, 2019, 61, pp.1069-1095
Journal articles hal-01998650v1
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Statistical Shape Analysis of Large Datasets Based on Diffeomorphic Iterative Centroids

Claire Cury , Joan Glaunès , Roberto Toro , Marie Chupin , Gunter Schumann
Frontiers in Neuroscience, 2018, 12, pp.803. ⟨10.3389/fnins.2018.00803⟩
Journal articles hal-01920263v2
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Analysis of anatomical variability using diffeomorphic iterative centroid in patients with Alzheimer's disease

Claire Cury , Joan Glaunès , Marie Chupin , Olivier Colliot
Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 2017, 5 (5), pp.350 - 358. ⟨10.1080/21681163.2015.1035403⟩
Journal articles hal-01135304v1
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Matrix-valued Kernels for Shape Deformation Analysis

Mario Micheli , Joan Alexis Glaunès
Geometry, Imaging and Computing, 2014, 1 (1), pp.57-139. ⟨10.4310/GIC.2014.v1.n1.a2⟩
Journal articles hal-00857313v1
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Statistical models for deformable templates in image and shape analysis (Modèles statistiques d'atlas déformables pour l'analyse d'images et de formes)

Stéphanie Allassonnière , Jérémie Bigot , Joan Alexis Glaunès , Florian Maire , Frederic J.P. Richard
Annales Mathématiques Blaise Pascal, 2013, 20 (1), pp.1-35. ⟨10.5802/ambp.320⟩
Journal articles hal-00857423v1
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Spatial and Anatomical Regularization of SVM: A General Framework for Neuroimaging Data

Rémi Cuingnet , Joan Alexis Glaunès , Marie Chupin , Habib Benali , Olivier Colliot
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2013, 35 (3), pp.682 - 696. ⟨10.1109/TPAMI.2012.142⟩
Journal articles hal-00790079v1
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Craniofacial reconstruction as a prediction problem using a Latent Root Regression model

Maxime Berar , Françoise Tilotta , Joan Alexis Glaunès , Yves Rozenholc
Forensic Science International, 2011, 210 (1-3), pp.228 - 236. ⟨10.1016/j.forsciint.2011.03.010⟩
Journal articles hal-00669491v1

Diffeomorphic brain registration under exhaustive sulcal constraints.

Guillaume Auzias , Olivier Colliot , Joan Alexis Glaunès , Matthieu Perrot , Jean-François Mangin
IEEE Transactions on Medical Imaging, 2011, 30 (6), pp.1214-1227. ⟨10.1109/TMI.2011.2108665⟩
Journal articles hal-00793675v1

A local technique based on vectorized surfaces for craniofacial reconstruction

Françoise Tilotta , Joan Alexis Glaunès , Frédéric Richard , Yves Rozenholc
Forensic Science International, 2010, 200 (1-3), pp.50-59. ⟨10.1016/j.forsciint.2010.03.029⟩
Journal articles hal-00522667v1
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Construction and analysis of a head CT-scan database for craniofacial reconstruction

Françoise Tilotta , Frédéric Richard , Joan Alexis Glaunès , Maxime Berar , Servane Gey
Forensic Science International, 2009, 191 (1-3), pp.112.e1-112.e12. ⟨10.1016/j.forsciint.2009.06.017⟩
Journal articles hal-00278579v1

Vestibular Asymmetry as the Cause of Idiopathic Scoliosis: A Possible Answer from Xenopus

François Lambert , David Malinvaud , Joan Glaunès , Catherine Bergot , Hans Straka
Journal of Neuroscience, 2009, 29 (40), pp.12477-12483. ⟨10.1523/JNEUROSCI.2583-09.2009⟩
Journal articles hal-02413541v1

Large Deformation Diffeomorphic Metric Curve Mapping

Joan Alexis Glaunès , Anqi Qiu , Michael I. Miller , Laurent Younes
International Journal of Computer Vision, 2008, 80 (3), pp.317-336. ⟨10.1007/s11263-008-0141-9⟩
Journal articles hal-00534437v1

Temporal Constrained Registration of Arbitrary Surface Contours for Use in 4D Radiation Therapy

R. Jacques , Joan Alexis Glaunès , E. Ford , T. Mcnutt , R. Taylor
Medical Physics, 2007, 34 (6), pp.2352
Journal articles hal-00625623v1

Diffeomorphic metric surface mapping in subregion of the superior temporal gyrus.

Marc Vaillant , Anqi Qiu , Joan Alexis Glaunès , Michael I Miller
NeuroImage, 2007, 34 (3), pp.1149-59. ⟨10.1016/j.neuroimage.2006.08.053⟩
Journal articles hal-00534439v1

Landmark Matching via Large Deformation Diffeomorphisms on the Sphere

Joan Alexis Glaunès , Marc Vaillant
Journal of Mathematical Imaging and Vision, 2004, 20, pp.179-200
Journal articles hal-00263586v1
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Partial Matching in the Space of Varifolds

Pierre-Louis Antonsanti , Joan Glaunès , Thomas Benseghir , Vincent Jugnon , Irène Kaltenmark
The 27th international conference on Information Processing in Medical Imaging (IPMI), Jun 2021, Rønne, Denmark
Conference papers hal-03177620v1
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Database Annotation with few Examples: An Atlas-based Framework using Diffeomorphic Registration of 3D Trees

Pierre-Louis Antonsanti , Thomas Benseghir , Vincent Jugnon , Joan Glaunès
Medical Image Computing and Computer Assisted Intervention – MICCAI 2020, Oct 2020, Lima, Peru. pp.160-170
Conference papers hal-02949367v1

KeOps: Calcul rapide sur GPU dans les espaces à noyaux

Benjamin Charlier , Jean Feydy , Joan Alexis Glaunès
Journées de Statistique de la SFdS, May 2018, Palaiseau, France
Conference papers hal-03973487v1

Kernel principal component analysis of the ear morphology

Reza Zolfaghari , Nicolas Epain , Craig Jin , Joan Alexis Glaunès , Anthony Tew
2017 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Mar 2017, New Orleans, United States. ⟨10.1109/ICASSP.2017.7952202⟩
Conference papers hal-01552750v1
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Surface Matching Using Normal Cycles

Pierre Roussillon , Joan Glaunès
3rd conference on Geometric Science of Information (GSI 2017), Nov 2017, Paris, France
Conference papers hal-01569336v1

Generating a morphable model of ears

Reza Zolfaghari , Nicolas Epain , Craig Jin , Joan Alexis Glaunès , Anthony Tew
2016 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), Mar 2016, Shangai, China. ⟨10.1109/ICASSP.2016.7471981⟩
Conference papers hal-01441265v1

Statistical shape analysis of large datasets using diffeomorphic iterative centroids

Claire Cury , Joan Glaunés , Roberto Toro , Gunter D Schumann , Vincent Frouin
Human Brain Mapping - 2015, Jun 2015, Honolulu, United States
Conference papers hal-01212226v1
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Characterization of Incomplete Hippocampal Inversions in a large dataset of young healthy subjects

Claire Cury , Roberto Toro , Fanny Cohen , Amel Mhaya , Dominique Hasboun
Human Brain Mapping - 2015, Jun 2015, Honolulu, United States
Conference papers hal-01212219v1

Measuring the thickness of the hippocampal pyramidal layer using in vivo 7T MRI

Emilie Gérardin , Joan Alexis Glaunès , Marie Chupin , Ana B. Graciano Fouquier , Kevin Roussel
Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, 2015, Honolulu, United States
Conference papers hal-01188833v1
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Kernel Metrics on Normal Cycles and Application to Curve Matching

Pierre Roussillon , Joan Alexis Glaunès
MFCA 2015 : 5th MICCAI workshop on Mathematical Foundations of Computational Anatomy, Oct 2015, Munich, Germany
Conference papers hal-01221101v2
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Deformetrica: a software for statistical analysis of anatomical shapes

Alexandre Routier , Marcel Prastawa , Benjamin Charlier , Cédric Doucet , Joan Alexis Glaunès
21st Annual Meeting of the Organization for Human Brain Mapping, OHBM 2015, Jun 2015, Honolulu, United States
Conference papers hal-01187469v1
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Large Deformation Diffeomorphic Metric Mapping and Fast-Multipole Boundary Element Method provide new insights for Binaural Acoustics,

Reza Zolfaghari , Nicolas Epain , Craig Jin , Joan Alexis Glaunès , Anthony Tew
IEEE International Conference on Acoustics, Speech, and Signal Processing, May 2014, Italy. http://arxiv.org/abs/1401.7100
Conference papers hal-01053758v1

A multiscale LDDMM template algorithm for studying ear shape variations

Reza Zolfaghari , Nicolas Epain , Craig Jin , Anthony Tew , Joan Alexis Glaunès
2014 8th International Conference on Signal Processing and Communication Systems (ICSPCS), Dec 2014, Gold Coast, Australia. ⟨10.1109/ICSPCS.2014.7021100⟩
Conference papers hal-01441410v1
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Fast Template-based Shape Analysis using Diffeomorphic Iterative Centroid

Claire Cury , Joan Alexis Glaunès , Marie Chupin , Olivier Colliot
MIUA 2014 - Medical Image Understanding and Analysis 2014, Jul 2014, Egham, United Kingdom. pp.39-44
Conference papers hal-01050590v1

Template Estimation for Large Database: A Diffeomorphic Iterative Centroid Method Using Currents

Claire Cury , Joan Alexis Glaunès , Olivier Colliot
GSI 2013 - First International Conference Geometric Science of Information, Aug 2013, Paris, France. pp.103-111, ⟨10.1007/978-3-642-40020-9_10⟩
Conference papers hal-00857440v1
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Joint T1 and Brain Fiber Log-Demons Registration Using Currents to Model Geometry

Viviana Siless , Joan Glaunès , Pamela Guevara , Jean-François Mangin , Cyril Poupon
MICCAI, Oct 2012, Nice, France, France
Conference papers hal-00723367v1
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Modelling morphological variability of the hippocampus using manifold learning and large deformations

Claire Cury , Joan Glaunès , Emilie Gerardin , Marie Chupin , Olivier Colliot
OHBM 2012 - 18th Annual Meeting of the Organization for Human Brain Mapping, Jun 2012, Pekin, China
Conference papers hal-00816100v1

Anatomical Regularization on Statistical Manifolds for the Classification of Patients with Alzheimer's Disease

R. Cuingnet , Joan Alexis Glaunès , Marie Chupin , Habib Benali , Olivier Colliot
MICCAI Workshop on Machine Learning in Medical Imaging, Sep 2011, Toronto, Canada. pp.201-208, ⟨10.1007/978-3-642-24319-6_25⟩
Conference papers hal-00712091v1

DISCO: a coherent diffeomorphic framework for brain registration under exhaustive sulcal constraints

Guillaume Auzias , Joan Alexis Glaunès , Olivier Colliot , Perrot Matthieu , Jean-François Mangin
Medical Image Computing and Computer-Assisted Intervention - MICCAI 2009, Sep 2009, United Kingdom. pp.730-738
Conference papers hal-00534432v1

Multi-Scale Diffeomorphic Cortical Registration Under Manifold Sulcal Constraints

Guillaume Auzias , Joan Alexis Glaunès , Arnaud Cachia , Pascal Cathier , Eric Bardinet
2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, May 2008, France. pp.1127-1130
Conference papers hal-00534433v1
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Template estimation form unlabeled point set data and surfaces for Computational Anatomy

Joan Alexis Glaunès , Sarang Joshi
1st MICCAI Workshop on Mathematical Foundations of Computational Anatomy: Geometrical, Statistical and Registration Methods for Modeling Biological Shape Variability, Oct 2006, Copenhagen, Denmark
Conference papers hal-00263576v1

Surface Matching via Currents

Marc Vaillant , Joan Alexis Glaunès
IPMI 2005, Mar 2005, France. pp.381-392
Conference papers hal-00263652v1