Johanne Aubé

21
Documents

Publications

Publications

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Omics exploration of deep-sea biodiversity: data from the “Pourquoi Pas les Abysses?” and eDNAbyss projects

Sophie Arnaud-Haond , Blandine Trouche , Cathy Liautard-Haag , Karine Alain , Johanne Aubé et al.

Scientific Data , 2025, 12 (1), pp.1982. ⟨10.1038/s41597-025-06009-1⟩

Article dans une revue hal-05434404v1
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Sulfur-rich deposits associated with the deep submarine volcano Fani Maoré support broad microbial sulfur cycling communities

Stéven Yvenou , Mélanie Le Moigne , Olivier Rouxel , Johanne Aubé , Blandine Trouche et al.

Microbiome, 2025, 13 (1), pp.166. ⟨10.1186/s40168-025-02153-3⟩

Article dans une revue hal-05162651v1
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FISH , a new tool for in situ preservation of RNA in tissues of deep‐sea mobile fauna

Valérie Cueff‐gauchard , Johanne Aubé , Jean‐romain Lagadec , Laurent Bignon , Jean‐pierre Lafontaine et al.

Limnology and Oceanography: Methods, 2025, 23 (4), pp.273-292. ⟨10.1002/lom3.10677⟩

Article dans une revue hal-05045012v1
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Symbiont acquisition strategies in post-settlement stages of two co-occurring deep-sea Rimicaris shrimp.

Marion Guéganton , Pierre Methou , Johanne Aubé , Cyril Noël , Ouafae Rouxel et al.

Ecology and Evolution, 2024, 14 (11), pp.e70369. ⟨10.1002/ece3.70369⟩

Article dans une revue hal-04878513v1
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Cooperation between two modes for DNA replication initiation in the archaeon <i>Thermococcus barophilus</i>

Logan Mc Teer , Yann Moalic , Valérie Cueff-Gauchard , Ryan Catchpole , Gaëlle Hogrel et al.

mBio, 2024, 15, ⟨10.1128/mbio.03200-23⟩

Article dans une revue hal-04546373v1
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Cooperation between two modes for DNA replication initiation in the archaeon Thermococcus barophilus

Logan Mc Teer , Yann Moalic , Valérie Cueff-Gauchard , Ryan Catchpole , Gaëlle Hogrel et al.

mBio, 2024, 15 (4), ⟨10.1128/mbio.03200-23⟩

Article dans une revue hal-04728152v1
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A metagenomic insight into the microbiomes of geothermal springs in the Subantarctic Kerguelen Islands

Maxime Allioux , Stéven Yvenou , Alexander Merkel , Marc Cozannet , Johanne Aubé et al.

Scientific Reports, 2022, 12 (1), pp.22243. ⟨10.1038/s41598-022-26299-4⟩

Article dans une revue hal-03912182v1
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A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata

Johanne Aubé , Marie-Anne Cambon-Bonavita , Lourdes Velo-Suárez , Valérie Cueff-Gauchard , Françoise Lesongeur et al.

Microbiome, 2022, 10 (1), pp.189. ⟨10.1186/s40168-022-01380-2⟩

Article dans une revue hal-04020088v1
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Persephonella atlantica sp. nov.: How to adapt to physico-chemical gradients in high temperature hydrothermal habitats

David François , Anne Godfroy , Clémentine Mathien , Johanne Aubé , Cecile Cathalot et al.

Systematic and Applied Microbiology, 2021, 44 (1), 126176 (10p.). ⟨10.1016/j.syapm.2020.126176⟩

Article dans une revue hal-04203270v1
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Transcriptomic evidence for versatile metabolic activities of mercury cycling microorganisms in brackish microbial mats

Adrien Vigneron , Perrine Cruaud , Johanne Aubé , Remy Guyoneaud , Marisol Goñi

npj Biofilms and Microbiomes, 2021, 7 (83), ⟨10.1038/s41522-021-00255-y⟩

Article dans une revue hal-03515719v1
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Niche partitioning in the Rimicaris exoculata holobiont: the case of the first symbiotic Zetaproteobacteria

Marie-Anne Cambon-Bonavita , Johanne Aubé , Valérie Cueff-Gauchard , Julie Reveillaud

Microbiome, 2021, 9, pp.87. ⟨10.1186/s40168-021-01045-6⟩

Article dans une revue hal-03245381v1
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Meta-omics Provides Insights into the Impact of Hydrocarbon Contamination on Microbial Mat Functioning

Johanne Aubé , Pavel Senin , Patricia Bonin , Olivier Pringault , Céline Jeziorski et al.

Microbial ecology, 2020, 80 (2), pp.286-295. ⟨10.1007/s00248-020-01493-x⟩

Article dans une revue hal-03065790v1
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Microbial Communities of the Shallow-Water Hydrothermal Vent Near Naples, Italy, and Chemosynthetic Symbionts Associated With a Free-Living Marine Nematode

Laure Bellec , Marie-Anne Cambon-Bonavita , Lucile Durand , Johanne Aube , Nicolas Gayet et al.

Frontiers in Microbiology, 2020, 11, pp.2023. ⟨10.3389/fmicb.2020.02023⟩

Article dans une revue hal-03932994v1

Desulfobotulus mexicanus sp. nov., a novel sulfate-reducing bacterium isolated from the sediment of an alkaline crater lake in Mexico

Maria Fernanda Pérez-Bernal , Elcia Margareth Souza Brito , Manon Bartoli , Johanne Aubé , Bernard Ollivier et al.

International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (5), pp.3219-3225. ⟨10.1099/ijsem.0.004159⟩

Article dans une revue hal-02860502v1
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Is It First the Egg or the Shrimp? – Diversity and Variation in Microbial Communities Colonizing Broods of the Vent Shrimp Rimicaris exoculata During Embryonic Development

Pierre Methou , Ivan Hernández-Ávila , Johanne Aubé , Valérie Cueff-Gauchard , Nicolas Gayet et al.

Frontiers in Microbiology, 2019, 10, ⟨10.3389/fmicb.2019.00808⟩

Article dans une revue hal-03330598v1

Biodeterioration of mortars exposed to sewers in relation to microbial diversity of biofilms formed on the mortars surface

Christine Lors , Johanne Aubé , Remy Guyoneaud , Franck Vandenbulcke , Denis Damidot

International Biodeterioration and Biodegradation, 2018, 130, pp.23 - 31. ⟨10.1016/j.ibiod.2018.03.012⟩

Article dans une revue istex hal-01784882v1

Desulfonatronum parangueonense sp. nov., a sulfate-reducing bacterium isolated from sediment of an alkaline crater lake

M.F. Pérez Bernal , Elcia Margareth Souza Brito , Manon Bartoli , Johanne Aubé , Marie-Laure Fardeau et al.

International Journal of Systematic and Evolutionary Microbiology, 2017, 67 (12), pp.4999-5005. ⟨10.1099/ijsem.0.002399⟩

Article dans une revue hal-01679475v1

The impact of long-term hydrocarbon exposure on the structure, activity, and biogeochemical functioning of microbial mats

Johanne Aubé , Pavel Senin , Olivier Pringault , Patricia Bonin , Bruno Deflandre et al.

Marine Pollution Bulletin, 2016, 111 (1-2), pp.115-125. ⟨10.1016/j.marpolbul.2016.07.023⟩

Article dans une revue istex ird-02048573v1

Contrasted effects of natural complex mixtures of PAHs and metals on oxygen cycle in a microbial mat

O. Pringault , Johanne Aubé , Olivier Bouchez , C. Klopp , J. Mariette et al.

Chemosphere, 2015, 135, pp.189-201. ⟨10.1016/j.chemosphere.2015.04.037⟩

Article dans une revue istex hal-01631880v1