Jonathan Romiguier

35
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Publications

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Recombination Rate Variation in Social Insects: An Adaptive Perspective

Timothy Delory , Jonathan Romiguier , Olav Rueppell , Karen Kapheim
Annual Review of Genetics, 2024, 58, pp.159-181. ⟨10.1146/annurev-genet-111523-102550⟩
Article dans une revue (article de synthèse) hal-04790124 v1
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Both nuclear and cytoplasmic polymorphisms are involved in genetic conflicts over male fertility in the gynodioecious snail, <i>Physa acuta</i>

Fanny Laugier , Nathanaëlle Saclier , Kévin Béthune , Axelle Braun , Lara Konecny-Dupré et al.
Evolution - International Journal of Organic Evolution, 2024, 78 (7), pp.1227-1236. ⟨10.1093/evolut/qpae053⟩
Article dans une revue hal-04707802 v1
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Pathogen-specific social immunity is associated with erosion of individual immune function in an ant

Florent Masson , Rachael Louise Brown , Joel Vizueta , Thea Irvine , Zijun Xiong et al.
Nature Communications, 2024, 15 (1), pp.9260. ⟨10.1038/s41467-024-53527-4⟩
Article dans une revue hal-04790157 v1
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The impact of social complexity on the efficacy of natural selection in termites

Camille Roux , Alice Ha , Arthur Weyna , Morgan Lode , Jonathan Romiguier
Peer Community Journal, 2024, 4, pp.e101. ⟨10.24072/pcjournal.476⟩
Article dans une revue hal-04790167 v1
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Social network position is a major predictor of ant behavior, microbiota composition, and brain gene expression

Tomas Kay , Joanito Liberti , Thomas Richardson , Sean Mckenzie , Chelsea Weitekamp et al.
PLoS Biology, 2023, 21 (7), pp.e3002203. ⟨10.1371/journal.pbio.3002203⟩
Article dans une revue hal-04301989 v1
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Ant phylogenomics reveals a natural selection hotspot preceding the origin of complex eusociality

Jonathan Romiguier , Marek Borowiec , Arthur Weyna , Quentin Helleu , Etienne Loire et al.
Current Biology, 2022, 32 (13), pp.942 - 2947.e4. ⟨10.1016/j.cub.2022.05.001⟩
Article dans une revue hal-03685595 v1
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Detection of F1 Hybrids from Single-genome Data Reveals Frequent Hybridization in Hymenoptera and Particularly Ants

Arthur Weyna , Lucille Bourouina , Nicolas Galtier , Jonathan Romiguier
Molecular Biology and Evolution, 2022, 39 (4), pp.msac071. ⟨10.1093/molbev/msac071⟩
Article dans une revue hal-03686117 v1
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DILS: Demographic inferences with linked selection by using ABC

Christelle Fraïsse , Iva Popovic , Clément Mazoyer , Bruno Spataro , Stephane Delmotte et al.
Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13323⟩
Article dans une revue hal-03156998 v1
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Hybridization enables the fixation of selfish queen genotypes in eusocial colonies

Arthur Weyna , Jonathan Romiguier , Charles Mullon
Evolution Letters, 2021, ⟨10.1002/evl3.253⟩
Article dans une revue hal-03356584 v1
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MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics

Rémi Allio , Alex Schomaker‐bastos , Jonathan Romiguier , Francisco Prosdocimi , Benoit Nabholz et al.
Molecular Ecology Resources, 2020, 20, pp.892-905. ⟨10.1111/1755-0998.13160⟩
Article dans une revue hal-02869919 v1
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Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum.

Yacine Ben Chehida , Julie Thumloup , Cassie Schumacher , Timothy Harkins , Alex Aguilar et al.
Scientific Reports, 2020, 10 (1), pp.15190. ⟨10.1038/s41598-020-71603-9⟩
Article dans une revue hal-03020351 v1
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Vulnerability to Fishing and Life History Traits Correlate with the Load of Deleterious Mutations in Teleosts

Jonathan Rolland , Dolph Schluter , Jonathan Romiguier
Molecular Biology and Evolution, 2020, 37 (8), pp.2192-2196. ⟨10.1093/molbev/msaa067⟩
Article dans une revue hal-03024742 v1
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Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion

Nicolas Galtier , Camille Roux , Marjolaine Rousselle , Jonathan Romiguier , Emeric Figuet et al.
Molecular Biology and Evolution, 2018, 35 (5), pp.1092 - 1103. ⟨10.1093/molbev/msy015⟩
Article dans une revue hal-01806906 v1
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Phylogenomics of palearctic Formica species suggests a single origin of temporary parasitism and gives insights to the evolutionary pathway toward slave-making behaviour

Jonathan Romiguier , Jonathan Rolland , Claire Morandin , Laurent Keller
BMC Evolutionary Biology, 2018, 18 (1), ⟨10.1186/s12862-018-1159-4⟩
Article dans une revue hal-02397984 v1
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The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies

Christelle Fraïsse , Camille Roux , Pierre-Alexandre Gagnaire , Jonathan Romiguier , Nicolas Faivre et al.
PeerJ, 2018, 6, ⟨10.7717/peerj.5198⟩
Article dans une revue hal-01882981 v1
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Extensive recent secondary contacts between four European white oak species

Thibault Leroy , Camille Roux , Laure Villate , Catherine Bodénès , Jonathan Romiguier et al.
New Phytologist, 2017, 214 (2), pp.865-878. ⟨10.1111/nph.14413⟩
Article dans une revue hal-01608621 v1
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Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

Camille Roux , Christelle Fraïsse , Jonathan Romiguier , Yoann Anciaux , Nicolas Galtier et al.
PLoS Biology, 2016, 14 (12), ⟨10.1371/journal.pbio.2000234⟩
Article dans une revue hal-01899028 v1
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Biased Gene Conversion and GC-Content Evolution in the Coding Sequences of Reptiles and Vertebrates

Emeric Figuet , Marion Ballenghien , Jonathan Romiguier , Nicolas Galtier
Genome Biology and Evolution, 2015, 7 (1), pp.240-250. ⟨10.1093/gbe/evu277⟩
Article dans une revue hal-01900679 v1
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L’investissement parental des espèces animales prédit leur diversité génétique

Nicolas Galtier , Jonathan Romiguier
Médecine/Sciences, 2015, 31 (1), pp.17-19. ⟨10.1051/medsci/20153101005⟩
Article dans une revue hal-03035755 v1
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K r /K c but not d N /d S correlates positively with body mass in birds, raising implications for inferring lineage-specific selection

Claudia C Weber , Jonathan Romiguier , Benoit Nabholz , Hans Ellegren
Genome Biology, 2014, 15 (12), pp.542. ⟨10.1186/s13059-014-0542-8⟩
Article dans une revue hal-01919685 v1
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OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals

Emmanuel J.P. Douzery , Celine Scornavacca , Jonathan Romiguier , Khalid Belkhir , Nicolas Galtier et al.
Molecular Biology and Evolution, 2014, 31 (7), pp.1923-1928. ⟨10.1093/molbev/msu132⟩
Article dans une revue hal-01133634 v1

Comparative population genomics in animals uncovers the determinants of genetic diversity

Jonathan Romiguier , P Gayral , M Ballenghien , Arnaud Bernard , V Cahais et al.
Nature, 2014, 515 (7526), pp.261-263. ⟨10.1038/nature13685⟩
Article dans une revue hal-01313724 v1
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Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition

Claudia C. Weber , Bastien Boussau , Jonathan Romiguier , Erich D. Jarvis , H. Ellegren
Genome Biology, 2014, 15, pp.549. ⟨10.1186/s13059-014-0549-1⟩
Article dans une revue hal-02045537 v1

Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals

Emeric Figuet , Jonathan Romiguier , Julien y Dutheil , Nicolas Galtier
Journal of Evolutionary Biology, 2014, 27 (5), pp.899 - 910. ⟨10.1111/jeb.12361⟩
Article dans une revue hal-01900719 v1
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Population genomics of eusocial insects: the costs of a vertebrate-like effective population size

Jonathan Romiguier , Joao M. Lourenco , Philippe Gayral , Nicolas Faivre , Lucy A Weinert et al.
Journal of Evolutionary Biology, 2014, 2 7, pp.5 9 3 - 6 0 3. ⟨10.1111/jeb.12331⟩
Article dans une revue hal-01082760 v1
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Genomic evidence for large, long-lived ancestors to placental mammals.

Jonathan Romiguier , Vincent Ranwez , Emmanuel J.P. Douzery , Nicolas Galtier
Molecular Biology and Evolution, 2013, 30 (1), pp.5-13. ⟨10.1093/molbev/mss211⟩
Article dans une revue hal-01268010 v1
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Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placentalmammals

Jonathan Romiguier , Vincent Ranwez , Frédéric Delsuc , Nicolas Galtier , Emmanuel J.P. Douzery
Molecular Biology and Evolution, 2013, 30 (9), pp.2134-2144. ⟨10.1093/molbev/mst116⟩
Article dans une revue hal-01268462 v1
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Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping.

Jonathan Romiguier , Emeric Figuet , Nicolas Galtier , Emmanuel J.P. Douzery , Bastien Boussau et al.
PLoS ONE, 2012, 7 (3), pp.e33852. ⟨10.1371/journal.pone.0033852⟩
Article dans une revue hal-00965722 v1
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Efficient selection of branch-specific models of sequence evolution.

Julien y Dutheil , Nicolas Galtier , Jonathan Romiguier , Emmanuel J.P. Douzery , Vincent Ranwez et al.
Molecular Biology and Evolution, 2012, 29 (7), pp.1861-1874. ⟨10.1093/molbev/mss059⟩
Article dans une revue hal-00965698 v1
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Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes

Jonathan Romiguier , Vincent Ranwez , Emmanuel J P Douzery , Nicolas Galtier
Genome Research, 2010, 20 (8), pp.1001 - 1009. ⟨10.1101/gr.104372.109⟩
Article dans une revue hal-03327982 v1
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A red queen under the shell: snails as a new model to study cyto-nuclear conflicts and gynodioecy

Patrice David , Fanny Laugier , Jonathan Romiguier , Emilien Luquet
International conference in Ecology & Evolution, Société Française d’Écologie et Évolution (SFE2), Oct 2024, Lyon, France
Communication dans un congrès hal-04886925 v1

Mito-nuclear interactions and gynodioecy in the freswhater snail

Patrice David , Mathilde Dufaÿ , Philippe Jarne , Tristan Lefébure , Emilien Luquet et al.
Simultaneously Hermaphroditic Organisms Workshop, Patrice David, Mar 2020, Montpellier, France
Communication dans un congrès hal-04870529 v1