Clement Jonquet

Directeur de recherche – INRAE (MISTEA)
95 %
Libre accès
200
Documents
Affiliations actuelles
  • WEB Architecture x Semantic WEB x WEB of Data (LIRMM | WEB3)
  • Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie (MISTEA)

Présentation

Clément Jonquet, docteur en informatique, est directeur de recherche à l’INRAE au sein de l’unité de recherche MISTEA et ancien maître de conférences et chercheur à l’Université de Montpellier, (LIRMM). Il a effectué un postdoctorat (3 ans) puis un séjour de recherche (3 ans) au laboratoire BMIR de Stanford. Il possède 20 ans d’expérience dans la recherche sur les ontologies et le Web sémantique appliqués à la biomédecine et à l’agroalimentaire. Ses travaux portent sur la conception et le développement de portails d’ontologies (ou catalogues d’artefacts sémantiques), de services basés sur les ontologies, les graphes de connaissances et l’IA symbolique. Il a été responsable ou co-responsable de plusieurs projets importants, tels que MSCA SIFRm, ANR D2KAB et HEU FAIR-IMPACT. Depuis 2015, il dirige AgroPortal (https://agroportal.eu), le portail de référence des vocabulaires et ontologies pour l’agroalimentaire, et co-dirige l’OntoPortal Alliance. Il participe également à des activités liées à la sémantique pour le développement du Cloud Européen pour la Science Ouverte (EOSC), notamment en tant que WP-lead FAIR-IMPACT. En 2026, il participe à 6 projets Horizon / Digital Europe (e.g., FIDELIS) liés à l’EOSC ou aux espaces de données (CEADS). Dr Jonquet est (co)auteur de 200 publications ou communications, totalisant plus de 4820 citations, dont 33 articles parus dans des revues internationales de divers domaines.

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Publications

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MAEVa: A hybrid approach for matching agroecological experiment variables

Oussama Mechhour , Sandrine Auzoux , Clement Jonquet , Mathieu Roche

Natural Language Processing Journal, 2025, 13, pp.100180. ⟨10.1016/j.nlp.2025.100180⟩

Article dans une revue hal-05287424v1
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OntoPortal-Astro, a semantic artefact catalogue for astronomy

Baptiste Cecconi , Laura Debisschop , Sébastien Derrière , Mireille Louys , Carmen Corre et al.

Astronomy and Computing, 2025, 53, pp.100991. ⟨10.1016/j.ascom.2025.100991⟩

Article dans une revue hal-05237630v1
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BiodivPortal: Enabling Semantic Services for Biodiversity within the German National Research Data Infrastructure

Naouel Karam , Jan Fillies , Clement Jonquet , Syphax Bouazzouni , Felicitas Löffler et al.

Datenbank-Spektrum, 2024, 24 (2), pp.129-137. ⟨10.1007/s13222-024-00474-5⟩

Article dans une revue hal-04608953v1
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A maturity model for catalogues of semantic artefacts

Oscar Corcho , Fajar Ekaputra , Ivan Heibi , Clement Jonquet , Andras Micsik et al.

Scientific Data , 2024, 11 (1), pp.479. ⟨10.1038/s41597-024-03185-4⟩

Article dans une revue lirmm-04290896v1
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RDF graph pair profile dataset for the data linking community

Raphaël Conde Salazar , Clement Jonquet , Danai Symeonidou

Data in Brief, 2024, 57, pp.111017. ⟨10.1016/j.dib.2024.111017⟩

Article dans une revue (data paper) hal-04735722v2
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C3PO: a crop planning and production process ontology and knowledge graph

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Konstantin Todorov , Clement Jonquet

Frontiers in Artificial Intelligence, 2023, 6, pp.1187090. ⟨10.3389/frai.2023.1187090⟩

Article dans une revue hal-04305067v1
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O'FAIRe makes you an offer: Metadata-based Automatic FAIRness Assessment for Ontologies and Semantic Resources

Emna Amdouni , Syphax Bouazzouni , Clement Jonquet

International Journal of Metadata, Semantics and Ontologies, 2022, 16 (1), pp.16-46. ⟨10.1504/IJMSO.2022.131133⟩

Article dans une revue lirmm-03630233v2
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French FastContext: a Publicly Accessible System for Detecting Negation, Temporality and Experiencer in French Clinical Notes

Mehdi Mirzapour , Amine Abdaoui , Andon Tchechmedjiev , William Digan , Sandra Bringay et al.

Journal of Biomedical Informatics, 2021, 117, pp.103733. ⟨10.1016/j.jbi.2021.103733⟩

Article dans une revue hal-03184001v1
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FAIRness Literacy: The Achilles' Heel of Applying FAIR Principles

Romain David , Laurence Mabile , Alison Specht , Sarah Stryeck , Mogens Thomsen et al.

CODATA Data Science Journal, 2020, 19 (32), pp.1-11. ⟨10.5334/dsj-2020-032⟩

Article dans une revue hal-02483307v2
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39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition

Caterina Caracciolo , Sophie Aubin , Clement Jonquet , Emna Amdouni , Romain David et al.

CODATA Data Science Journal, 2020, 19 (1), ⟨10.5334/dsj-2020-047⟩

Article dans une revue hal-03059376v1
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PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison

Pierre Monnin , Joël Legrand , Graziella Husson , Patrice Ringot , Andon Tchechmedjiev et al.

BMC Bioinformatics, 2019, 20 (S4), ⟨10.1186/s12859-019-2693-9⟩

Article dans une revue hal-02103899v1
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Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy

Aravind Venkatesan , Gildas Tagny Ngompe , Nordine El Hassouni , Imène Chentli , Valentin Guignon et al.

PLoS ONE, 2018, 13 (11), pp.e0198270. ⟨10.1371/journal.pone.0198270⟩

Article dans une revue lirmm-01964772v1
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SIFR Annotator: Ontology-Based Semantic Annotation of French Biomedical Text and Clinical Notes

Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Stella Zevio , Clement Jonquet

BMC Bioinformatics, 2018, 19 (1), pp.405-431. ⟨10.1186/s12859-018-2429-2⟩

Article dans une revue lirmm-01934127v1
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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Lisa Harper , Jacqueline Campbell , Ethalinda K S Cannon , Sook Jung , Monica Poelchau et al.

Database -Weston-, 2018, 2018, pp.#bay088. ⟨10.1093/database/bay088⟩

Article dans une revue lirmm-01964769v1
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A novel framework for biomedical entity sense induction

Juan Antonio A Lossio-Ventura , Jiang Bian , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

Journal of Biomedical Informatics, 2018, 84, pp.31-41. ⟨10.1016/j.jbi.2018.06.007⟩

Article dans une revue lirmm-01851988v2
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AgroPortal: A vocabulary and ontology repository for agronomy

Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzale Yeumo et al.

Computers and Electronics in Agriculture, 2018, 144, pp.126-143. ⟨10.1016/j.compag.2017.10.012⟩

Article dans une revue lirmm-01679502v1
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ViewpointS: capturing formal data and informal contributions into an adaptive knowledge graph

Philippe Lemoisson , Guillaume Surroca , Clement Jonquet , Stefano A. Cerri

International Journal of Knowledge and Learning, 2018, 12 (2), ⟨10.1504/IJKL.2017.10012219⟩

Article dans une revue lirmm-01605411v1
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Enhanced Functionalities for Annotating and Indexing Clinical Text with the NCBO Annotator+

Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Soumia Melzi , Jitendra Jonnagaddala et al.

Bioinformatics, 2018, 34 (11), pp.1962-1965. ⟨10.1093/bioinformatics/bty009⟩

Article dans une revue lirmm-01680514v1
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Harnessing the power of unified metadata in an ontology repository: the case of AgroPortal

Clement Jonquet , Anne Toulet , Biswanath Dutta , Vincent Emonet

Journal on Data Semantics, 2018, pp.1-31. ⟨10.1007/s13740-018-0091-5⟩

Article dans une revue lirmm-01852080v2
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Building an effective and efficient background knowledge resource to enhance ontology matching

Amina Annane , Zohra Bellahsene , Faical Azouaou , Clement Jonquet

Journal of Web Semantics, 2018, 51, pp.51-68. ⟨10.1016/j.websem.2018.04.001⟩

Article dans une revue hal-01809627v2
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Developing data interoperability using standards: A wheat community use case

Esther Dzale Yeumo , Michaël Alaux , Elizabeth Arnaud , Sophie Aubin , Ute Baumann et al.

F1000Research, 2017, 6 (1843), pp.1843. ⟨10.12688/f1000research.12234.1⟩

Article dans une revue lirmm-01652022v2
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NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation

Marcos Martínez-Romero , Clement Jonquet , Martin J. O’connor , John Graybeal , Alejandro Pazos et al.

Journal of Biomedical Semantics, 2017, 8 (21), ⟨10.1186/s13326-017-0128-y⟩

Article dans une revue lirmm-01598848v1
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Biomedical term extraction: overview and a new methodology

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

Information Retrieval Journal, 2016, Medical Information Retrieval, 19 (1), pp.59-99. ⟨10.1007/s10791-015-9262-2⟩

Article dans une revue lirmm-01274539v1
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Towards a mixed approach to extract biomedical terms from text corpus

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

International journal of Knowledge Discovery in Bioinformatics, 2014, 4 (1), pp.1-15. ⟨10.4018/ijkdb.2014010101⟩

Article dans une revue lirmm-00859846v2
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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources

Clement Jonquet , Paea Lependu , Sean Falconer , Adrien Coulet , Natalya F. Noy et al.

Journal of Web Semantics, 2011, 9 (3), pp.316-324. ⟨10.1016/j.websem.2011.06.005⟩

Article dans une revue lirmm-00622155v2
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Building a Biomedical Ontology Recommender Web Service

Clement Jonquet , Mark A. Musen , Nigam H. Shah

Journal of Biomedical Semantics, 2010, 1 (S1), pp.29, Selected in Pr. Russ Altman’s 2011 Year in Review. ⟨10.1186/2041-1480-1-S1-S1⟩

Article dans une revue hal-00489093v2
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A UIMA Wrapper for the NCBO Annotator

William A. Baumgartner Jr , Christophe Roeder , Clement Jonquet , Nigam H. Shah , William A Baumgartner et al.

Bioinformatics, 2010, 26 (14), pp.1800-1801. ⟨10.1093/bioinformatics/btq250⟩

Article dans une revue hal-00504107v2
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BioPortal: ontologies and integrated data resources at the click of a mouse

Natalya F. Noy , Nigam H. Shah , Patricia L. Whetzel , Benjamin Dai , Michael Dorf et al.

Nucleic Acids Research, 2009, 37, pp.170-173. ⟨10.1093/nar/gkp440⟩

Article dans une revue hal-00492020v2
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Comparison of concept recognizers for building the Open Biomedical Annotator

Nigam Shah , Nipun Bhatia , Clement Jonquet , Daniel L. Rubin , Annie P. Chiang et al.

BMC Bioinformatics, 2009, 10 (9:S14), pp.9:S14. ⟨10.1186/1471-2105-10-S9-S14⟩

Article dans une revue hal-00492026v1
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Ontology-driven Indexing of Public Datasets for Translational Bioinformatics

Nigam H. Shah , Clement Jonquet , Annie P. Chiang , Atul J. Butte , Rong Chen et al.

BMC Bioinformatics, 2009, 10 (2:S1), pp.1-10. ⟨10.1186/1471-2105-10-S2-S1⟩

Article dans une revue hal-00492025v2
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Agent-Grid Integration Language

Clement Jonquet , Pascal Dugénie , Stefano A. Cerri

Multiagent and Grid Systems - An International Journal of Cloud Computing , 2008, 4 (2), pp.167-211. ⟨10.3233/MGS-2008-4203⟩

Article dans une revue lirmm-00139691v1
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The Grid Shared Desktop: a bootstrapping environment for collaboration

Pascal Dugénie , Philippe Lemoisson , Clement Jonquet , Monica Crubézy , Claude Lorenço

Advanced Technology for Learning, 2006, Special issue on Collaborative Learning, 3 (4), pp.241-249. ⟨10.2316/Journal.208.2006.4.208-0895⟩

Article dans une revue lirmm-00128326v2
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The STROBE Model: Dynamic Service Generation on the Grid

Clement Jonquet , Stefano A. Cerri

Applied Artificial Intelligence, 2005, Special issue on Learning Grid Services, 19 (9-10), pp.967-1013. ⟨10.1080/08839510500234826⟩

Article dans une revue lirmm-00105302v1

Adapting BERT and AgriBERT for Agroecology: A Small-Corpus Pretraining Approach

Oussama Mechhour , Sandrine Auzoux , Clément Jonquet , Mathieu Roche

ICAIGC 2025 - 2nd International Conference on Artificial Intelligence and Green Computing, May 2025, Beni Mellal, Morocco. pp.96-109, ⟨10.1007/978-3-032-02312-4_8⟩

Communication dans un congrès hal-05392364v1
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Usages d'AgroPortal dans des systèmes d'information à INRAE

Clément Jonquet , Guillaume Alviset , Syphax Bouazzouni , Llorenç Cabrera-Bosquet , Arnaud Charleroy et al.

8. Atelier INtégration de sources/masses de données hétérogènes et Ontologies, dans le domaine des sciences du VIVant et de l’Environnement (IN-OVIVE), adossé à la conférence Ingénierie des Connaissances @PFIA, AFIA- Association Française d’Intelligence Artificielle, Jul 2025, Dijon, France. 5p

Communication dans un congrès hal-05077024v1
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Federated FAIR Semantic Artefacts Discovery and Search with OntoPortal Federation

Clement Jonquet , Syphax Bouazzouni , Guillaume Alviset , Nicola Fiore , Naouel Karam et al.

ISWC 2025 - 24th International Semantic Web Conference, Nov 2025, Nara, Japan. pp.434-450, ⟨10.1007/978-3-032-09530-5_25⟩

Communication dans un congrès hal-05224287v1
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Prédiction des séquences culturales par apprentissage automatique : une comparaison entre grandes cultures et maraîchage diversifié

Baptiste Darnala , Clément Jonquet , Florence Amardeilh , Konstantin Todorov

RJCIA 2025 - Rencontres des Jeunes Chercheurs en Intelligence Artificielle, PFIA, Jun 2025, Dijon, France

Communication dans un congrès hal-05169036v1
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Adapting BERT and AgriBERT for agroecology: A small-corpus pretraining approach

Oussama Mechhour , Sandrine Auzoux , Clément Jonquet , Mathieu Roche

2. International Conference on Artificial Intelligence and Green Computing (ICAIGC 2025), May 2025, Beni Mellal, Morocco. 15 p

Communication dans un congrès hal-05246352v1
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MAEVa : Une approche hybride pour la mise en relation des variables expérimentales agroécologiques

Oussama Mechhour , Sandrine Auzoux , Clement Jonquet , Mathieu Roche

RJCIA 2025 - Rencontres des Jeunes Chercheurs en Intelligence Artificielle, Jun 2025, Dijon, France

Communication dans un congrès hal-05166794v1
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Embrapa's contributions to integrate brazilian agricultural vocabularies: Agrotermos in AgroPortal

Milena Ambrosio Telles , Clement Jonquet , Bibiana Teixeira de Almeida , Jaudete Daltio , Celina Maki Takemura et al.

17. Seminar on Ontology Research in Brazil (ONTOBRAS 2024), C. M. Fonseca; V. Zamborlini; E. Cardoso; J. L. Emygdio, Oct 2024, Vittoria-Gasteiz, Spain

Communication dans un congrès hal-04928168v1
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C3PO : Une ontologie pour la planification de cultures et les processus de production agricole

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Konstantin Todorov , Clement Jonquet

35. Journées francophones d'Ingénierie des Connaissances (IC 2024) @ Plate-Forme Intelligence Artificielle (PFIA 2024), AFIA-Association Française pour l'Intelligence Artificielle, Jul 2024, La Rochelle, France. 3p

Communication dans un congrès hal-04677414v1
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Ontology Engineering and the FAIR principles: A Gap Analysis toward a FAIR-by-design methodology

María Poveda-Villalon , Daniel Garijo , Alejandra Gonzalez-Beltran , Clement Jonquet , Yann Le Franc

FOAM 2024 - FAIR principles for Ontologies and Metadata in Knowledge Management, C. Trojahn; D. Garijo; M. Poveda Villalón; C. Henrique Bernabé; A. Yu Lin, Jul 2024, Enschede, Netherlands. 15p

Communication dans un congrès hal-04678381v1
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Normalisation automatique de variables issues de bases de données en agroécologie

Oussama Mechhour , Sandrine Auzoux , Clément Jonquet , Mathieu Roche

Atelier TextMine2024, P. Cuxac, C. Lopez, Jan 2024, Dijon, France. pp.39-50

Communication dans un congrès hal-04483699v1
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Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology

Clement Jonquet , John Graybeal , Syphax Bouazzouni , Michael Dorf , Nicola Fiore et al.

ISWC 2023 - 22nd International Semantic Web Conference, Nov 2023, Athens, Greece. pp.38-58, ⟨10.1007/978-3-031-47243-5_3⟩

Communication dans un congrès hal-04088537v2
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About versioning ontologies or any digital objects with clear semantics

Clement Jonquet , María Poveda-Villalón

DaMaLOS 2023 - 3rd Workshop on Metadata and Research (objects) Management for Linked Open Science, L. J. Castro; S. Schimmler; J. Dierkes; D. Dessì; D. Rebholz-Schuhmann, May 2023, Hersonissos (Crète), Greece. ⟨10.4126/FRL01-006444994⟩

Communication dans un congrès hal-04094847v2
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Common Minimum Metadata for FAIR Semantic Artefacts

Clement Jonquet , Biswanath Dutta , Luiz O. Bonino da Silva Santos , Robert Pergl , Yann Le Franc

Onto4FAIR 2023 - 2nd Workshop on Ontologies for FAIR and FAIR Ontologies, C. Trojahn; L. O. Bonino da Silva Santos; G. Guizzardi; C. Jonquet, Jul 2023, Sherbrooke, Canada

Communication dans un congrès hal-04106533v2
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Classification of Linking Problem Types for linking semantic data

Raphaël Conde Salazar , Clément Jonquet , Danai Symeonidou

SEMANTICS 2023 - 9. International Conference on Semantic Systems, Sep 2023, Leipzig, Germany. ⟨10.3233/SSW230014⟩

Communication dans un congrès hal-04206689v1
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IndustryPortal: a Common Repository for FAIR Ontologies in Industry 4.0

Emna Amdouni , Arkopaul Sarkar , Clement Jonquet , Mohamed Hedi Karray

22. International Semantic Web Conference (ISWC 2023), Nov 2023, Athènes, Greece

Communication dans un congrès hal-04207343v1
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State-of-the-art browsing of SKOS resources in AgroPortal

Clement Jonquet , Syphax Bouazzouni

NKOS 2023 - NKOS Consolidated Workshop, J. Busch; D. Tudhope; M. Zeng, Nov 2023, Daegu, South Korea

Communication dans un congrès hal-04102864v1
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Ontological Representation of Cultivated Plants: Linking Botanical and Agricultural Usages

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Konstantin Todorov , Clement Jonquet

MK 2022 - 1. Workshop on Modular Knowledge, L. Bozzato; V. Anita Carrier; T. Hahmann; A. Zimmermann, May 2022, Hersonissos, Greece. pp.165-173

Communication dans un congrès hal-03679652v1
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FAIR or FAIRer? An integrated quantitative FAIRness assessment grid for semantic resources and ontologies

Emna Amdouni , Clement Jonquet

MTSR 2021 - 15th International Conference on Metadata and Semantics Research, Nov 2021, Madrid, Spain. pp.67-80, ⟨10.1007/978-3-030-98876-0_6⟩

Communication dans un congrès lirmm-03208544v3
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Une méthodologie et un outil d'évaluation du niveau de "FAIRness" pour les ressources sémantiques : le cas d'AgroPortal

Emna Amdouni , Clement Jonquet

IC 2021 - 32es Journées francophones d'Ingénierie des Connaissances, Jun 2021, Bordeaux, France. pp.11-19

Communication dans un congrès lirmm-03232615v1
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L’ontologie E-Phy, une base de connaissances pour le catalogue des produits phytopharmaceutiques autorisés en agriculture en France

Syphax Bouazzouni , Clement Jonquet

IC 2021 - 32es Journées francophones d'Ingénierie des Connaissances, AFIA, Jun 2021, Bordeaux, France. pp.105-112

Communication dans un congrès emse-03260693v1
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Description sémantique des stades de développement phénologique des plantes, cas d’étude de la vigne

Catherine Roussey , Xavier Delpuech , Marc Raynal , Florence Amardeilh , Stéphan Bernard et al.

IC 2021 - 32es Journées francophones d'Ingénierie des Connaissances, Jun 2021, Bordeaux, France. pp.30-38

Communication dans un congrès emse-03260085v1
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Semantic Description of Plant Phenological Development Stages, starting with Grapevine

Catherine Roussey , Xavier Delpuech , Florence Amardeilh , Stephan Bernard , Clement Jonquet

MTSR 2020 - 14th International Conference on Metadata and Semantics Research, Nov 2020, Madrid, Spain. pp.257-268, ⟨10.1007/978-3-030-71903-6_25⟩

Communication dans un congrès hal-02996846v1
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Crop Planning and Production Process Ontology (C3PO), a new model to assist diversified crop production

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Clement Jonquet

IFOW 2021 Integrated Food Ontology Workshop, Sep 2021, Bolzano, Italy

Communication dans un congrès lirmm-03389513v1
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Analysis of Term Reuse, Term Overlap and Extracted Mappings across AgroPortal Semantic Resources

Amir Laadhar , Elcio Abrahão , Clement Jonquet

EKAW 2020 - 22nd International Conference on Knowledge Engineering and Knowledge Management, Sep 2020, Bozen-Bolzano, Italy. pp.71-87, ⟨10.1007/978-3-030-61244-3_5⟩

Communication dans un congrès lirmm-02945172v1
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Investigating One Million XRefs in Thirthy Ontologies from the OBO World

Amir Laadhar , Elcio Abrahão , Clement Jonquet

ICBO 2020 - 11th International Conference on Biomedical Ontologies, Sep 2020, Bozen-Bolzano, Italy. pp.G.1-12

Communication dans un congrès lirmm-02945170v1
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Results of the Ontology Alignment Evaluation Initiative 2020

Mina Abd Nikooie Pour , Alsayed Algergawy , Reihaneh Amini , Daniel Faria , Irini Fundulaki et al.

15. International Workshop on Ontology Matching (OM 2020), Nov 2020, Athènes, Greece. pp.92-138

Communication dans un congrès hal-04312966v1
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Recent progresses in data and knowledge integration for decision support in agri-food chains

Sophie Aubin , Pierre Bisquert , Patrice Buche , Juliette Dibie-Barthelemy , Liliana Ibanescu et al.

IC 2019 - 30es Journées francophones d'Ingénierie des Connaissances, AFIA, Jul 2019, Toulouse, France. pp.43-59

Communication dans un congrès hal-02284538v1
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Projet VisaTM : l'interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français

Fabienne Kettani , Stéphane Schneider , Sophie Aubin , Robert Bossy , Claire François et al.

IC 2018 - 29es Journées francophones d'Ingénierie des Connaissances, PFIA, Jul 2018, Nancy, France. pp.247-249

Communication dans un congrès hal-01839626v2
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Projet VisaTM : l’interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français

Fabienne Kettani , Stéphane Schneider , Sophie Aubin , Robert Bossy , Claire François et al.

IC 2018 - 29es journées francophones d'Ingénierie des Connaissances, PFIA, Jul 2018, Nancy, France

Communication dans un congrès hal-04420482v1
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New Generation Metadata vocabulary for Ontology Description and Publication

Biswanath Dutta , Anne Toulet , Vincent Emonet , Clement Jonquet

11th International Conference on Metadata and Semantics Research (MTSR 2017), Nov 2017, Tallinn, Estonia. pp.173-185, ⟨10.1007/978-3-319-70863-8_17⟩

Communication dans un congrès lirmm-01605783v1
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Enrichment of French Biomedical Ontologies with UMLS Concepts and Semantic Types for Biomedical Named Entity Recognition Though Ontological Semantic Annotation

Andon Tchechmedjiev , Clement Jonquet

LOTKS: Language, Ontology, Terminology and Knowledge Structures, Sep 2017, Montpellier, France

Communication dans un congrès lirmm-01605517v2
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Challenges for ontology repositories and applications to biomedicine & agronomy

Clement Jonquet

SIMBig: Symposium on Information Management and Big Data, Sep 2017, Lima, Peru. pp.25-37

Communication dans un congrès lirmm-01679500v1
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ICD-10 coding of death certificates with the NCBO and SIFR Annotators at CLEF eHealth 2017

Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Clement Jonquet

CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland

Communication dans un congrès lirmm-01605359v1
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PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units

Pierre Monnin , Clement Jonquet , Joël Legrand , Amedeo Napoli , Adrien Coulet

Methods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩

Communication dans un congrès hal-01593184v2
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French ConText: Détecter la négation, la temporalité et le sujet dans les textes cliniques Français

Amine Abdaoui , Andon Tchechmedjiev , William Digan , Sandra Bringay , Clement Jonquet

SIIM 2017 - 4ème Symposium sur l'Ingénierie de l'Information Médicale, Nov 2017, Toulouse, France

Communication dans un congrès lirmm-01656834v1
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ViewpointS: When Social Ranking Meets the Semantic Web

Philippe Lemoisson , Guillaume Surroca , Clement Jonquet , Stefano A. Cerri

FLAIRS: Florida Artificial Intelligence Research Society, May 2017, Marco Island, United States. pp.329-334

Communication dans un congrès lirmm-01598842v1
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Two years later: the landscape of vocabularies and ontologies in the AgroPortal

Clement Jonquet , Anne Toulet , Vincent Emonet

International Workshop on sources and data integration in agriculture, food and environment using ontologies (IN-OVIVE 2017), Jul 2017, Montpellier, France

Communication dans un congrès lirmm-01598852v1
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MuEVo, a breast cancer Consumer Health Vocabulary built out of web forums

Solène Eholié , Mike Donald Tapi Nzali , Sandra Bringay , Clement Jonquet

SWAT4LS: Semantic Web Applications and Tools for Life Sciences, 2016, Amsterdam, Netherlands

Communication dans un congrès hal-01398253v1
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Reusing the NCBO BioPortal technology for agronomy to build AgroPortal

Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzalé-Yeumo et al.

ICBO 2016 - 7th International Conference on Biomedical Ontologies, P. Jaiswal; R. Hoehndorf, Aug 2016, Corvallis, OR, United States

Communication dans un congrès hal-01398251v1
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Réconciliation d'alignements multilingues dans BioPortal

Amina Annane , Vincent Emonet , Faiçal Azouaou , Clement Jonquet

IC 2016 - 27es Journées francophones d'Ingénierie des Connaissances, LIRMM, Jun 2016, Montpellier, France

Communication dans un congrès lirmm-01395900v1
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Subjective and generic distance in ViewpointS: an experiment on WordNet

Guillaume Surroca , Philippe Lemoisson , Stefano A. Cerri , Clement Jonquet

WIMS: Web Intelligence, Mining and Semantics, Jun 2016, Nîmes, France. ⟨10.1145/2912845.2912870⟩

Communication dans un congrès lirmm-01397993v1
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SIFR BioPortal : Un portail ouvert et générique d’ontologies et de terminologies biomédicales françaises au service de l’annotation sémantique

Clement Jonquet , Amina Annane , Khedidja Bouarech , Vincent Emonet , Soumia Melzi

JFIM: Journées Francophones d'Informatique Médicale, Jun 2016, Genève, Suisse

Communication dans un congrès hal-01398250v1
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Modèle de métadonnées dans un portail d'ontologies

Anne Toulet , Vincent Emonet , Clement Jonquet

6èmes Journées Francophones sur les Ontologies (JFO 2016), Shared best paper award, Oct 2016, Bordeaux, France

Communication dans un congrès lirmm-01397388v1
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Automatic Biomedical Term Polysemy Detection

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

LREC 2016 - 10th International Conference on Language Resources and Evaluation, May 2016, Portorož, Slovenia. pp.1684-1688

Communication dans un congrès hal-04271452v1
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MuEVo, un vocabulaire multi-expertise (patient/médecin) dédié au cancer du sein

Solène Eholié , Mike Donald Tapi Nzali , Sandra Bringay , Clement Jonquet

IC 2016 - 27es Journées francophones d'Ingénierie des Connaissances, LIRMM, Jun 2016, Montpellier, France

Communication dans un congrès hal-01379272v1
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Selection and Combination of Heterogeneous Mappings to Enhance Biomedical Ontology Matching

Amina Annane , Zohra Bellahsene , Faiçal Azouaou , Clement Jonquet

20th International Conference on Knowledge Engineering and Knowledge Management (EKAW 2016), Nov 2016, Bologne, Italy. pp.19-33, ⟨10.1007/978-3-319-49004-5_2⟩

Communication dans un congrès lirmm-01395883v1
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Multilingual Mapping Reconciliation between English-French Biomedical Ontologies

Amina Annane , Vincent Emonet , Faiçal Azouaou , Clement Jonquet

WIMS: Web Intelligence, Mining and Semantics, Jun 2016, Nîmes, France. ⟨10.1145/2912845.2912847⟩

Communication dans un congrès lirmm-01395880v1
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Diffusion de systèmes de préférences par confrontation de points de vue, vers une simulation de la Sérendipité

Guillaume Surroca , Philippe Lemoisson , Clement Jonquet , Stefano A. Cerri

IC 2015 - 26es Journées francophones d'Ingénierie des Connaissances, PFIA, Jul 2015, Rennes, France

Communication dans un congrès lirmm-01172223v1
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Prédiction de la polysémie pour un terme biomédical

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

12ième Conférence francophone en Recherche d'Information et Applications (CORIA), Mar 2015, Paris, France. pp.437-452

Communication dans un congrès lirmm-01132654v1
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Roadmap for a multilingual BioPortal

Clement Jonquet , Vincent Emonet , Mark A. Musen

MSW: Multilingual Semantic Web, Jun 2015, Portoroz, Slovenia

Communication dans un congrès lirmm-01172218v1
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Preference Dissemination by Sharing Viewpoints: Simulating Serendipity

Guillaume Surroca , Philippe Lemoisson , Clement Jonquet , Stefano A. Cerri

IC3K: Knowledge Discovery, Knowledge Engineering and Knowledge Management, Nov 2015, Lisbon, Portugal. pp.402-409, ⟨10.5220/0005636204020409⟩

Communication dans un congrès lirmm-01223078v1
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AgroPortal : a proposition for ontology-based services in the agronomic domain

Clement Jonquet , Esther Dzalé-Yeumo , Elizabeth Arnaud , Pierre Larmande

IN-OVIVE, Jun 2015, Rennes, France

Communication dans un congrès lirmm-01172232v1
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Gestion du multilinguisme dans un portail d’ontologies: étude de cas pour le NCBO BioPortal

Clement Jonquet , Mark A. Musen

TOTh Workshop, Dec 2014, Bruxelles, Belgique

Communication dans un congrès lirmm-01099882v1
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Yet Another Ranking Function for Automatic Multiword Term Extraction

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

9. International Conference on Natural Language Processing (PolTAL), Sep 2014, Warsaw, Poland. pp.52-64, ⟨10.1007/978-3-319-10888-9_6⟩

Communication dans un congrès lirmm-01068556v1
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Integration of Linguistic and Web Information to Improve Biomedical Terminology Extraction

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

IDEAS: International Database Engineering & Applications Symposium, Jul 2014, Porto, Portugal. pp.265-269, ⟨10.1145/2628194.2628208⟩

Communication dans un congrès lirmm-01068547v2
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Scoring semantic annotations returned by the NCBO Annotator

Soumia Melzi , Clement Jonquet

SWAT4LS: Semantic Web Applications and Tools for Life Sciences, Dec 2014, Berlin, Germany

Communication dans un congrès lirmm-01099860v1
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An Approach to Compare Bio-Ontologies Portals

Julien Grosjean , Lina F. Soualmia , Khedidja Bouarech , Clement Jonquet , Stefan J. Darmoni

MIE: Medical Informatics European, Aug 2014, Istanbul, Turkey

Communication dans un congrès lirmm-01052549v1
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SIFR Project: The Semantic Indexing of French Biomedical Data Resources

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

SIMBig: Symposium on Information Management and Big Data, Juan Antonio Lossio-Ventura; Hugo Alatrista-Salas, Sep 2014, Cuzco, Peru. pp.58-61

Communication dans un congrès lirmm-01112901v1
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Biomedical Terminology Extraction: A new combination of Statistical and Web Mining Approaches

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

JADT: Journées d'Analyse statistique des Données Textuelles, Jun 2014, Paris, France. pp.421-432

Communication dans un congrès lirmm-01056598v2
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REX:Innovation pédagogique via l'utilisation de tablettes numériques à Polytech Montpellier

Clement Jonquet , Christophe Fiorio , Philippe Papet , Stéphanie Belin-Mejean , Claudine Pastor et al.

TICE: Technologies de l'Information et de la Communication pour l'Enseignement, Nov 2014, Béziers, France. pp.97-106

Communication dans un congrès lirmm-01118757v1
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Construction et évolution de connaissances par confrontation de points de vue : prototype pour la recherche d'information scientifique

Guillaume Surroca , Philippe Lemoisson , Clement Jonquet , Stefano A. Cerri

IC 2014 - 25es Journées francophones d'Ingénierie des Connaissances, May 2014, Clermont-Ferrand, France. pp.175-186

Communication dans un congrès lirmm-00995948v1
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Representing NCBO Annotator results in standard RDF with the Annotation Ontology

Soumia Melzi , Clement Jonquet

7th Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2014), Poster session, Dec 2014, Berlin, Germany

Communication dans un congrès lirmm-01099869v1
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Extraction automatique de termes combinant différentes informations

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

TALN: Traitement Automatique des Langues Naturelles, Jul 2014, Marseille, France. pp.407-412

Communication dans un congrès lirmm-01020051v1
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Comparing BioPortal and HeTOP: towards a unique biomedical ontology portal?

Julien Grosjean , Lina F. Soualmia , Khedidja Bouarech , Clement Jonquet , Stefan J. Darmoni

IWBBIO: International Work-Conference on Bioinformatics and Biomedical Engineering, Apr 2014, Granada, Spain

Communication dans un congrès lirmm-01052583v1
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Combining C-value and Keyword Extraction Methods for Biomedical Terms Extraction

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

LBM: Languages in Biology and Medicine, Dec 2013, Tokyo, Japan

Communication dans un congrès lirmm-01019991v1
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Negotiating the Web Science Curriculum through Shared Educational Artefacts

Madalina Croitoru , Stéphane Bazan , Stefano A. Cerri , Hugh C. Davis , Raffaella Folgieri et al.

3rd International Conference on Web Science (WebSci 2011), honorable mention award, Jun 2011, Koblenz, Germany. pp.14-17

Communication dans un congrès lirmm-00652085v1
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The NCBO Annotator: OntologyBased Annotation as a Web Service

Patricia L. Whetzel , Clement Jonquet , Cherie H. Youn , Michael Dorf , Ray Fergerson et al.

2nd International Conference on Biomedical Ontology (ICBO 2011), Demo session, O. Bodenreider, M. E. Martone, A. Ruttenberg, Jul 2011, Buffalo, NY, United States. pp.302-303

Communication dans un congrès hal-04271625v1
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The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies

Gautam K. Parai , Clement Jonquet , Rong Xu , Mark A. Musen , Nigam H. Shah

American Medical Informatics Association Annual Symposium, AMIA'10, Nov 2010, Washington, DC, United States. pp.6

Communication dans un congrès hal-00558033v1
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Optimize First, Buy Later: Analyzing Metrics to Ramp-up Very Large Knowledge Bases

Paea Lependu , Natalya F. Noy , Clement Jonquet , Paul R. Alexander , Nigam H. Shah et al.

9th International Semantic Web Conference (ISWC 2010), Nov 2010, Shangai, China. pp.486-501

Communication dans un congrès hal-00558036v1
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Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical

Clement Jonquet , Adrien Coulet , Nigam Shah , Mark A. Musen

21èmes Journées Francophones d'Ingénierie des Connaissances (IC 2010), Jun 2010, Nimes, France. pp.271-282

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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources

Clement Jonquet , Paea Lependu , Sean M. Falconer , Adrien Coulet , Natalya F. Noy et al.

9th International Semantic Web Conference (ISWC 2010), Semantic Web Challenge winner award, Nov 2010, Shangai, China. pp.8

Communication dans un congrès hal-00557982v1
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What Four Million Mappings Can Tell You about Two Hundred Ontologies

Amir Ghazvinian , Natasha F. Noy , Clement Jonquet , Nigam H. Shah , Mark A. Musen

8th International Semantic Web Conference (ISWC2009), Oct 2009, Washington DC, United States. pp.229-242

Communication dans un congrès hal-00489094v1
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Ontology Services for Semantic Applications in Healthcare and Life Sciences

Nigam H. Shah , Natasha F. Noy , Clement Jonquet , Adrien Coulet , Patricia L. Whetzel et al.

AMIA 2009 - American Medical Informatics Association Annual Symposium, Nov 2009, San Francisco, United States. pp.515

Communication dans un congrès hal-04276271v1
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BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse

Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Benjamin Dai , Michael Dorf et al.

1st International Conference on Biomedical Ontology (ICBO 2009), Poster session, B. Smith, Jul 2009, Buffalo, United States. pp.197

Communication dans un congrès hal-04276312v1
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Un service Web pour l'annotation sémantique de données biomédicales avec des ontologies

Clement Jonquet , Nigam Shah , Mark A. Musen

13èmes Journées Francophones d'Informatique Médicale, JFIM'09, Apr 2009, Nice, France, France. pp.12

Communication dans un congrès hal-00492022v1
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Prototyping a Biomedical Ontology Recommender Service

Clement Jonquet , Nigam Shah , Mark A. Musen

12th Annual Bio-Ontologies SIG Meeting, P. Lord, N. Shah, S.-A. Sansone, S. Stephens, L. Soldatova, Jun 2009, Stockholm, Sweden

Communication dans un congrès hal-04271509v1
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NCBO Annotator: Semantic Annotation of Biomedical Data

Clement Jonquet , Nigam H. Shah , Cherie H. Youn , Mark A. Musen , Chris Callendar et al.

ISWC 2009 - 8. International Semantic Web Conference, Oct 2009, Washington, United States

Communication dans un congrès hal-04276274v1
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The Open Biomedical Annotator

Clement Jonquet , Nigam Shah , Mark A. Musen

AMIA Summit on Translational Bioinformatics, Mar 2009, San Francisco, CA, United States. pp.56-60

Communication dans un congrès hal-00492024v1
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Service-Based Integration of Grid and Multi-Agent Systems Models

Clement Jonquet , Pascal Dugénie , Stefano A. Cerri

International Workshop on Service-Oriented Computing: Agents, Semantics, and Engineering, SOCASE'08:, May 2008, Estoril, Portugal. pp.56-68, ⟨10.1007/978-3-540-79968-9_5⟩

Communication dans un congrès lirmm-00288454v1
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BioPortal: A Web Repository for Biomedical Ontologies and Data Resources

Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf , Nicholas Griffith et al.

7th International Semantic Web Conference (ISWC 2008), Poster and demo session, Oct 2008, Karlsruhe, Germany

Communication dans un congrès hal-04276324v1
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A System for Ontology-Based Annotation of Biomedical Data

Clement Jonquet , Mark A. Musen , Nigam Shah

International Workshop on Data Integration in The Life Sciences 2008, DILS'08, Jun 2008, Evry, France. pp.144-152

Communication dans un congrès hal-00279660v1
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The Principle of Immanence in GRID-Multiagent Integrated Systems

Pascal Dugénie , Clement Jonquet , Stefano A. Cerri

AWeSOMe'08: 4th International Workshop On Agents and Web Services Merging in Distributed Environments - OTM 2008 Workshops, Nov 2008, Monterrey, Mexico. pp.98-107, ⟨10.1007/978-3-540-88875-8_29⟩

Communication dans un congrès lirmm-00339373v1
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Agent-Grid Integration Ontology

Frédéric Duvert , Clement Jonquet , Pascal Dugénie , Stefano A. Cerri

OTM: On the Move to Meaningful Internet Systems, Oct 2006, Montpellier, France. pp.136-146, ⟨10.1007/11915034_36⟩

Communication dans un congrès istex lirmm-00110569v1
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The Grid Shared Desktop for CSCL

Stefano A. Cerri , Monica Crubézy , Pascal Dugénie , Clement Jonquet , Philippe Lemoisson

eChallenges 2006 Conference, Oct 2006, Barcelona, Spain, pp.1493-1499

Communication dans un congrès lirmm-00128314v1
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Intégration orientée service des modèles Grid et Multi-Agents

Clement Jonquet , Stefano A. Cerri , Pascal Dugénie

JFSMA 2006 - 14e Journées Francophones sur les Systèmes Multi-Agents, Oct 2006, Annecy, France. pp.271-274

Communication dans un congrès lirmm-00107500v1
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I-Dialogue: Modelling Agent Conversation by Streams and Lazy Evaluation

Clement Jonquet , Stefano A. Cerri

International Lisp Conference, ILC'05, Jun 2005, Stanford University, United States. pp.1

Communication dans un congrès hal-00250148v1
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Agents Communicating for Dynamic Service Generation

Clement Jonquet , Stefano A. Cerri

GLS'04: 1st Workshop on GRID Learning Services at ITS'04, Aug 2004, Maceio, Brazil. pp.39-53

Communication dans un congrès lirmm-00108792v1
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Les Agents comme des interpréteurs Scheme : Spécification dynamique par la communication

Clement Jonquet , Stefano A. Cerri

RFIA: Reconnaissance des Formes et Intelligence Artificielle, AFRIF-AFIA, Jan 2004, Toulouse, France. pp.779-788

Communication dans un congrès hal-00250149v1
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Apprentissage Issu de la Communication pour des Agents Cognitifs

Clement Jonquet , Stefano A. Cerri

JFSMA 2003 - 11e Journées Francophones sur les Systèmes Multi-Agents, Nov 2003, Hammamet, Tunisie. pp.83-87

Communication dans un congrès lirmm-00191963v1
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Cognitive Agents Learning by Communicating

Clement Jonquet , Stefano A. Cerri

ALCAA: Agents Logiciels - Coopération - Apprentissage - Activités Humaines, Sep 2003, Bayonne, France

Communication dans un congrès lirmm-00191962v1
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Dynamic Learning Agents and Enhanced Presence on the Grid

Stefano A. Cerri , Marc Eisenstadt , Clement Jonquet

3rd International Workshop on GRID Infrastructure to Support Future Technology Enhanced Learning (LeGE-WG), Dec 2003, Berlin, Germany

Communication dans un congrès lirmm-00269487v1
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Are those URIs so cool? URI Resolution and Content Negotiation in Ontology Repositories

Clement Jonquet , Imad Bourouche , Syphax Bouazzouni

24. International Semantic Web Conference (ISWC 2025), Nov 2025, Nara, Japan. , Demo accepted at ISWC 2025 but not published in the corresponding proceedings because of a copyright issue: https://ceur-ws.org/Vol-4085/, 2025

Poster de conférence hal-05240849v1

Semantic artefact and ontology services for long-term data interpretation

Clement Jonquet

PV 2023 - 10. Conference on Ensuring Long-Term Preservation and Adding Value to Scientific and Technical Data, May 2023, Genève, Switzerland. 2023

Poster de conférence hal-04079485v1
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FAIR-IMPACT Expanding FAIR solutions across EOSC

Sara Pittonet Gaiarin , Kevin Ashley , Clement Jonquet , Ingrid Dillo

1. Conference on Research Data Infrastructure - CORDI 2023, Sep 2023, Karlsruhe, Germany. 2

Poster de conférence hal-04313031v1

Minimum metadata for FAIR Semantic artefacts

Yann Le Franc , Biswanath Dutta , Clement Jonquet , Robert Pergl

SciDataCon International Data Week, Jun 2022, Séoul, South Korea. , 1079

Poster de conférence hal-04313036v1
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O'FAIRe: Ontology FAIRness Evaluator in the AgroPortal semantic resource repository

Emna Amdouni , Syphax Bouazzouni , Clement Jonquet

ESWC 2022 - 19. Extended Semantic Web Conference, May 2022, Hersonissos, Greece. , Poster and demonstration, 13384, pp.89-94, 2022, Lecture Notes in Computer Science. ⟨10.1007/978-3-031-11609-4_17⟩

Poster de conférence lirmm-03630543v3
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AgroLD: A Knowledge Graph Database for plant functional genomics

Bertrand Pitollat , Ndomassi Tando , Mathieu Rouard , Gaetan Droc , Aravind Venkatesan et al.

JOBIM 2021, Jul 2021, Paris, France. 2018, ⟨10.1101/325423⟩

Poster de conférence hal-03269813v1
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Adoption of BioPortal's Ontology Registry Software: The Emerging OntoPortal Community

John Graybeal , Clement Jonquet , Nicola Fiore , Mark A. Musen

RDA P13 - 13th Research Data Alliance Plenary Meeting, Apr 2019, Philadelphia, United States.

Poster de conférence lirmm-02360625v1
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D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity

Sophie Aubin , Anne-Francoise Adam-Blondon , Michael Alaux , Mouhamadou Ba , Stéphan Bernard et al.

14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩

Poster de conférence lirmm-02351000v1
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Maitriser une technologie de gestion des ontologies et vocabulaires en France : défis et enjeux

Clement Jonquet

SemWeb.Pro, Nov 2018, Paris, France

Poster de conférence lirmm-01852073v2
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AgroPortal: an ontology repository for agronomy

Clement Jonquet

11th Conference on Information Technology in Agriculture, Food and the Environment (EFITA 2017), Poster session, Jul 2017, Montpellier, France. , 2017

Poster de conférence lirmm-01598854v2
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The Agronomic Linked Data (AgroLD) project

Clement Jonquet

11th Conference on Information Technology in Agriculture, Food and the Environment (EFITA 2017), Poster session, Jul 2017, Montpellier, France. , 2017

Poster de conférence lirmm-01598856v1
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AgroPortal: an open repository of ontologies and vocabularies for agriculture and nutrition data

Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzalé Yeumo et al.

Ben Schaap. GODAN Summit, Sep 2016, New York, NY, United States. , 2016

Poster de conférence hal-01398252v1
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AgroPortal : A Proposition for Ontology-Based Services in the Agronomic Domain

Clement Jonquet , Esther Dzalé-Yeumo , Elizabeth Arnaud , Pierre Larmande , Anne Toulet et al.

XXIV International Plant & Animal Genome Conference (PAG 2016), Poster session, Jan 2016, San Diego, United States. , P0343, 2016, Systems Biology and Ontologies, Poster session

Poster de conférence lirmm-01397465v1
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A Way to Automatically Enrich Biomedical Ontologies

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

P. Evaggelia; M. Sofian; K. Georgia; M. Amelie; T. Letizia; M. Ioana; S. Kostas. 19. International Conference on Extending Database Technology (EDBT 2016), Mar 2016, Bordeaux, France. OpenProceedings.org, pp.676-677, 2016, ⟨10.5441/002/edbt.2016.82⟩

Poster de conférence hal-01274540v1

Facilitating efficient knowledge management and discovery in the Agronomic Sciences

Aravind Venkatesan , Pierre Larmande , Clement Jonquet , Manuel Ruiz , Patrick Valduriez

4. Research Data Alliance Plenary Meeting (RDA P4), Sep 2014, Amsterdam, Netherlands. , 2014

Poster de conférence lirmm-01071822v1
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Scénarios pédagogiques numériques via l'utilisation de l'iPad par et pour les étudiants de Polytech Montpellier

Clement Jonquet , Christophe Fiorio , Philippe Papet , Stéphanie Belin-Mejean , Cellule Ipad Des Enseignants de Polytech Montpellier

Karsenti, T. 2ème Sommet iPad en éducation, May 2014, Montreal, Canada. , 2014

Poster de conférence lirmm-00924265v1
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BIOTEX: A system for Biomedical Terminology Extraction, Ranking, and Validation

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire

13th International Semantic Web Conference (ISWC 2014), poster & demo session, Oct 2014, Riva del Garda, Italy. , 13th International Semantic Web Conference - Posters & Demonstrations, CEUR Workshop Proceedings (1272), pp.157-160, 2014, CEUR Workshop Proceedings, n° 1272

Poster de conférence lirmm-01112894v1
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Semantic Annotation Workflow using Bio-Ontologies

Emmanuel Castanier , Clement Jonquet , Soumia Melzi , Pierre Larmande , Manuel Ruiz et al.

Workshop on Crop Ontology and Phenotyping Data Interoperability, Mar 2014, Montpellier, France. , 1 p., 2014

Poster de conférence lirmm-01052546v1

BioPortal : ontologies et ressources de données biomédicales à portée de main

Clement Jonquet

1er Symposium sur l'Ingénierie de l'Information Médicale (SIIM 2011), Démonstration session, Jun 2011, Toulouse, France

Poster de conférence hal-04271598v1
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Ontology Web Services for Semantic Applications

Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Clement Jonquet , Adrien Coulet et al.

Pacific Symposium on Biocomputing (PSB 2010), Poster session, Jan 2010, Waimea, United States.

Poster de conférence hal-04297858v1
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Ontology-based Tools to Enhance the Curation Workflow

Patricia L. Whetzel , Nigam H. Shah , Natasha F. Noy , Clement Jonquet , Cherie H. Youn et al.

International Society for Biocuration. 4th International Biocuration Conference (Biocuration 2010), Poster session, Oct 2010, Tokyo, Japan. , W2-5, pp.47

Poster de conférence hal-04276262v1
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Ontology-based Web Services for Data Annotation and Integration

Patricia L. Whetzel , Nigam H. Shah , Natalya Noy , Clement Jonquet , Adrien Coulet et al.

18th International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Technology track, Jul 2010, Boston, United States. , TT33, 2010

Poster de conférence lirmm-01605892v1

Ontology-based Web Services for Semantic Applications

Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Clement Jonquet , Adrien Coulet et al.

13th Annual Bio-Ontologies SIG Meeting, Poster session, Jul 2010, Boston, United States.

Poster de conférence hal-04271647v1

BioPortal: A Web Repository for Biomedical Ontologies and Data Resources

Patricia L. Whetzel , Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf et al.

3rd International Biocuration Conference (Biocuration 2009), Poster session, Apr 2009, Berlin, Germany

Poster de conférence hal-04300487v1

BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse

Patricia L. Whetzel , Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf et al.

17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2009) and 8th European Conference on Computational Biology (ECCB 2009), Poster session, Jun 2009, Stockholm, Sweden.

Poster de conférence hal-04297940v1

BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse

Patricia L. Whetzel , Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf et al.

12th Annual Bio-Ontologies SIG Meeting, Poster session, Jun 2009, Stockholm, Sweden

Poster de conférence hal-04297907v1
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BioPortal: A Web Repository for Biomedical Ontologies and Data Resources

Patricia L. Whetzel , Natasha F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf et al.

Pacific Symposium on Biocomputing (PSB 2009), Poster session, Jan 2009, Waimea, HI, United States.

Poster de conférence hal-04297888v1

Billion Data Points Trapped in International Data Repository Daring rescue Planned!

Simon N. Twigger , Jennifer Smith , Rajni Nigam , Clement Jonquet , Mark A. Musen

3rd International Biocuration Conference (Biocuration 2009), Poster session, Apr 2009, Berlin, Germany

Poster de conférence hal-04300504v1

BioPortal: ontologies and data resources with the click of a mouse.

Mark A. Musen , Nigam H. Shah , Natasha F. Noy , Benjamin Dai , Michael Dorf et al.

American Medical Informatics Association Annual Symposium (AMIA 2008), Demonstration session, Nov 2008, Washington DC, United States. pp.1223-4, 2008

Poster de conférence hal-04300575v1
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Improving data identification and tagging for more effective decision making in agriculture

Pascal Neveu , Romain David , Clement Jonquet

Leisa Armstrong. Improving Data Management and Decision Support Systems in Agriculture, 85, Burleigh Dodds Science Publishing, 2020, Series in Agricultural Science, 978-1-78676-340-2

Chapitre d'ouvrage hal-02164149v1
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Semantic Indexing of French Biomedical Data Resources

Clement Jonquet

Project Repository Journal, 3, , pp.16-19, 2019

Chapitre d'ouvrage lirmm-02360615v1
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Learning Agents and Enhanced Presence for Generation of Services on the Grid

Clement Jonquet , Marc Eisenstadt , Stefano A. Cerri

Towards the Learning GRID: Advances in Human Learning Services, 127, IOS Press, pp.203-213, 2005, Frontiers in Artificial Intelligence and Applications, 978-1-58603-534-1 (print) 978-1-60750-123-7 (online)

Chapitre d'ouvrage lirmm-00106610v1
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D1.3 - Recommendations for a FAIR EOSC - White Paper of the FAIR-IMPACT Synchronisation Force

Marjan Grootveld , Anne Sofie Fink , Clement Jonquet , Esteban González Guardia , Ingrid Dillo et al.

Grant Agreement No. 101057344, FAIR-IMPACT. 2025, pp.D1.3

Rapport (rapport contrat/projet) hal-05009365v1
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M1.9 Third Synchronisation Workshop Report

Marita Everhardt , Anne Sofie Fink , Clement Jonquet , Esteban Gonzalez , Ingrid Dillo et al.

M1.9, FAIR-IMPACT. 2025, 26 p

Rapport hal-05085855v1
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D4.2 - FAIR semantic artefact lifecycle from engineering, to sharing

Clement Jonquet , Nina Grau , María Poveda-Villalon , Daniel Garijo , Antony Wilson et al.

D4.2, FAIR-IMPACT. 2025, pp.14643279

Rapport (rapport contrat/projet) hal-04928493v1
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D1.4 - FAIR-IMPACT Sustainability Plan

Ingrid Dillo , Maaike Verburg , Joy Davidson , Clement Jonquet , Sophie Aubin et al.

D4.1, FAIR-IMPACT. 2025

Rapport hal-05085825v1
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D2.1 - Documentation of available building blocks and technologies

Raffaele Giaffreda , Davaadorj Battulga , Bernd Rauch , Raghad Matar , Piergiorgio Cipriano et al.

D2.1, CEADS. 2025, 39p

Rapport (rapport contrat/projet) hal-05506413v1
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FAIRfest: Celebrating advancements of FAIR solutions in EOSC - post event report

Fanny Adloff , Joy Davidson , Ingrid Dillo , Claudia d'Onofrio , Anne Sofie Fink et al.

FAIR-IMPACT. 2025, 24p

Rapport hal-05085829v1
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FIDELIS landscape survey analysis

Thomas Jouneau , Maaike Verburg , Laurence Horton , Geert van Geest , Sanni Tujunen et al.

FIDELIS. 2025, 98 p

Rapport hal-05467646v1
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M4.5 - Internal and external use case evaluation and demonstrators

Sophie Aubin , Carmen Corre , Clement Jonquet , Andrea Scharnhorst

M4.5, FAIR-IMPACT. 2025, 55 p

Rapport hal-05024763v1
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D4.6 - Use case driven validation of semantic artefact exploitation within data repositories

Sophie Aubin , Carmen Corre , Clement Jonquet , Llorenç Cabrera-Bosquet , Ilaria Rosati et al.

D4.6, FAIR-IMPACT. 2025

Rapport hal-05024648v1
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OntoPortal Workshop 2024 Report

Clement Jonquet , Jennifer L Vendetti , Guillaume Alviset , Ilaria Rosati , John Graybeal et al.

INRAE; Stanford University. 2024

Rapport hal-04891214v1
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D4.1 - Semantic artefact governance models and disciplinary approaches for inclusion within EOSC

Parham Ramezani , Nina Grau , Clement Jonquet , Nicola Fiore

D4.1, FAIR-IMPACT. 2024, 52p

Rapport hal-04678465v1
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D4.3 - Specification of shared metadata description of semantic artefacts and their catalogues including common reference API

Antony Wilson , Clement Jonquet

D4.3, FAIR-IMPACT. 2024

Rapport (rapport contrat/projet) hal-04678453v1
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M4.2 - Processes & tools to engineer FAIR semantic artefacts

María Poveda-Villalon , Daniel Garijo , Alejandra Gonzalez-Beltran , Yann Le Franc , Clement Jonquet et al.

M4.2, FAIR-IMPACT. 2024

Rapport hal-04493130v1
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M4.4 - Review of Semantic Artefact Catalogues and guidelines for serving FAIR semantic artefacts in EOSC

Clement Jonquet , Nina Grau

M4.4, FAIR-IMPACT. 2024, 44p

Rapport hal-04678461v1
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M4.3 - Specification of semantic artefact description

Alejandra Gonzalez-Beltran , Antony Wilson , Biswanath Dutta , Daniel Garijo , Clement Jonquet et al.

M4.3, FAIR-IMPACT. 2024

Rapport hal-04493123v1
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D2.1 Targeted landscape analysis report

Joy Davidson , Sara Pittonet , Sandra Boerman , Loek Brinkman , Clement Jonquet et al.

D2.1, FAIR-IMPACT. 2023

Rapport lirmm-04605918v1
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M1.7 - First synchronisation workshop

Marjan Grootveld , Joy Davidson , Ingrid Dillo , Maaike Verburg , Ryan O'Connor et al.

M1.7, FAIR-IMPACT. 2023

Rapport hal-04290941v1
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D5.2 - Metrics for automated FAIR software assessment in a disciplinary context

Neil Chue Hong , Elena Breitmoser , Mario Antonioletti , Joy Davidson , Daniel Garijo et al.

D5.2, FAIR-IMPACT. 2023

Rapport lirmm-04605844v1
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M4.1 - Semantic artefact governance models: example of community practices

Parham Ramezani , Nina Grau , Clement Jonquet , Nicola Fiore

M4.1, FAIR-IMPACT. 2023

Rapport hal-04330046v1
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OntoPortal Workshop 2023 Report

Clement Jonquet , Syphax Bouazzouni , John Graybeal , Jennifer L. Vendetti

INRAE, Université de Montpellier, Stanford University. 2023, pp.17

Rapport hal-04494573v1
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OntoPortal Workshop 2022 Report

Clement Jonquet , John Graybeal

Université de Montpellier; Stanford University. 2022, 16p

Rapport hal-04087929v1
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A Map of Agri-food Data Standards

Valeria Pesce , Jeni Tennison , Lisette Mey , Clement Jonquet , Anne Toulet et al.

[Research Report] F1000 7-177, Godan. 2018

Rapport (rapport de recherche) lirmm-01964791v1
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Assessing the Practice of Ontology Metadata: A Survey Result

Anne Toulet , Biswanath Dutta , Clement Jonquet

[Research Report] University of Montpellier. 2018

Rapport (rapport de recherche) lirmm-02315001v1
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YAM-BIO – Results for OAEI 2017

Amina Annane , Zohra Bellahsene , Faiçal Azouaou , Clement Jonquet

University of Montpellier. 2017, pp.1-6

Rapport lirmm-01679503v1
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Landscaping the use of semantics to enhance the interoperability of agricultural data

Sophie Aubin , Caterina Caracciolo , Panagiotis Zervas , Pascal Aventurier , Patrice Buche et al.

[Research Report] Research Data Alliance. 2017, pp.59

Rapport (rapport de recherche) hal-02607815v1
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Help will be provided for this task: Ontology-Based Annotator Web Service

Clement Jonquet , Mark A. Musen , Nigam H. Shah

Stanford University. 2008, pp.BMIR2008-1317

Rapport hal-04312971v1
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Ontrez Project Report

Nigam H. Shah , Clement Jonquet

Stanford University. 2007, pp.BMIR-2007-1289

Rapport hal-04312974v1
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AGIL Specifications

Clement Jonquet , Pascal Dugénie , Stefano A. Cerri

06030, 2006, pp.32

Rapport lirmm-00102805v1
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Communication Agent et Interprétation Scheme pour l’apprentissage au méta-niveau

Clement Jonquet

Université Montpellier 2. 2003, pp.88

Rapport hal-04271531v1
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Dynamic Service Generation: Agent interactions for service exchange on the Grid

Clement Jonquet

Software Engineering [cs.SE]. Université Montpellier II - Sciences et Techniques du Languedoc, 2006. English. ⟨NNT : ⟩

Thèse tel-00115389v1
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Joint Proceedings of the Onto4FAIR 2023 Workshops

Cassia Trojahn , Luiz Olavo Bonino da Silva Santos , Giancarlo Guizzardi , Clement Jonquet , Megan Katsumi et al.

Onto4FAIR 2023 - 2. Workshop on Ontologies for FAIR and FAIR Ontologies, Jul 2023, Sherbrooke, Canada. pp.1-31, 2023

Proceedings/Recueil des communications hal-04312604v1
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Proceedings of the 2nd International Workshop on Semantics for Biodiversity (S4BioDiv 2017)

Alsayed Algergawy , Naouel Karam , Friederike Klan , Clement Jonquet

S4BioDiv: International Workshop on Semantics for Biodiversity, Oct 2017, Vienna, Australia. Ceur-1933, CEUR, 2017

Proceedings/Recueil des communications lirmm-01605671v1
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Actes de la 9ème conférence des Technologies de l’Information et de la Communication pour l’Enseignement (TICE 2014)

Claude Frasson , Jean-Marc Labat , Fabien Gandon , David Cassagne , Clement Jonquet et al.

Claude Frasson; Jean-Marc Labat; Fabien Gandon; David Cassagne; Clement Jonquet; Stefano A. Cerri; Philippe Pujas. TICE: Technologies de l’Information et de la Communication pour l’Enseignement, Nov 2014, Béziers, France. IUT Béziers, 2014

Proceedings/Recueil des communications hal-01187103v1
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Proceedings of the 1st International Workshop on Semantics for Biodiversity (S4BioDiv 2013)

Pierre Larmande , Elizabeth Arnaud , Isabelle Mougenot , Clement Jonquet , Thérèse Libourel Rouge et al.

Ceur-979, pp.001-131, 2013

Proceedings/Recueil des communications lirmm-00831757v1