Clement Jonquet

Directeur de recherche – INRAE (MISTEA), Chercheur associé – Université de Montpellier (LIRMM)
95%
Libre accès
186
Documents
Affiliations actuelles
  • WEB Architecture x Semantic WEB x WEB of Data (LIRMM | WEB3)
  • Mathématiques, Informatique et STatistique pour l'Environnement et l'Agronomie (MISTEA)

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Publications

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BiodivPortal: Enabling Semantic Services for Biodiversity within the German National Research Data Infrastructure

Naouel Karam , Jan Fillies , Clement Jonquet , Syphax Bouazzouni , Felicitas Löffler et al.
Datenbank-Spektrum, 2024, 24 (2), pp.129-137. ⟨10.1007/s13222-024-00474-5⟩
Article dans une revue hal-04608953 v1
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A maturity model for catalogues of semantic artefacts

Oscar Corcho , Fajar Ekaputra , Ivan Heibi , Clement Jonquet , Andras Micsik et al.
Scientific Data , 2024, 11 (1), pp.479. ⟨10.1038/s41597-024-03185-4⟩
Article dans une revue lirmm-04290896 v1
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RDF graph pair profile dataset for the data linking community

Raphaël Conde Salazar , Clement Jonquet , Danai Symeonidou
Data in Brief, 2024, 57, pp.111017. ⟨10.1016/j.dib.2024.111017⟩
Article dans une revue (data paper) hal-04735722 v2
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C3PO: a crop planning and production process ontology and knowledge graph

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Konstantin Todorov , Clement Jonquet
Frontiers in Artificial Intelligence, 2023, 6, pp.1187090. ⟨10.3389/frai.2023.1187090⟩
Article dans une revue hal-04305067 v1
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O'FAIRe makes you an offer: Metadata-based Automatic FAIRness Assessment for Ontologies and Semantic Resources

Emna Amdouni , Syphax Bouazzouni , Clement Jonquet
International Journal of Metadata, Semantics and Ontologies, 2022, 16 (1), pp.16-46. ⟨10.1504/IJMSO.2022.131133⟩
Article dans une revue lirmm-03630233 v2
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French FastContext: a Publicly Accessible System for Detecting Negation, Temporality and Experiencer in French Clinical Notes

Mehdi Mirzapour , Amine Abdaoui , Andon Tchechmedjiev , William Digan , Sandra Bringay et al.
Journal of Biomedical Informatics, 2021, 117, pp.103733. ⟨10.1016/j.jbi.2021.103733⟩
Article dans une revue hal-03184001 v1
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FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles

Romain David , Laurence Mabile , Alison Specht , Sarah Stryeck , Mogens Thomsen et al.
CODATA Data Science Journal, 2020, 19 (32), pp.1-11. ⟨10.5334/dsj-2020-032⟩
Article dans une revue hal-02483307 v2
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39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition

Caterina Caracciolo , Sophie Aubin , Clement Jonquet , Emna Amdouni , Romain David et al.
CODATA Data Science Journal, 2020, 19 (1), ⟨10.5334/dsj-2020-047⟩
Article dans une revue hal-03059376 v1
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PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison

Pierre Monnin , Joël Legrand , Graziella Husson , Patrice Ringot , Andon Tchechmedjiev et al.
BMC Bioinformatics, 2019, 20 (S4), ⟨10.1186/s12859-019-2693-9⟩
Article dans une revue hal-02103899 v1
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Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy

Aravind Venkatesan , Gildas Tagny Ngompe , Nordine El Hassouni , Imène Chentli , Valentin Guignon et al.
PLoS ONE, 2018, 13 (11), pp.e0198270. ⟨10.1371/journal.pone.0198270⟩
Article dans une revue lirmm-01964772 v1
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SIFR Annotator: Ontology-Based Semantic Annotation of French Biomedical Text and Clinical Notes

Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Stella Zevio , Clement Jonquet
BMC Bioinformatics, 2018, 19 (1), pp.405-431. ⟨10.1186/s12859-018-2429-2⟩
Article dans une revue lirmm-01934127 v1
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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Lisa Harper , Jacqueline Campbell , Ethalinda K S Cannon , Sook Jung , Monica Poelchau et al.
Database -Weston-, 2018, 2018, pp.#bay088. ⟨10.1093/database/bay088⟩
Article dans une revue lirmm-01964769 v1
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Enhanced Functionalities for Annotating and Indexing Clinical Text with the NCBO Annotator+

Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Soumia Melzi , Jitendra Jonnagaddala et al.
Bioinformatics, 2018, 34 (11), pp.1962-1965. ⟨10.1093/bioinformatics/bty009⟩
Article dans une revue lirmm-01680514 v1
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ViewpointS: capturing formal data and informal contributions into an adaptive knowledge graph

Philippe Lemoisson , Guillaume Surroca , Clement Jonquet , Stefano A. Cerri
International Journal of Knowledge and Learning, 2018, 12 (2), ⟨10.1504/IJKL.2017.10012219⟩
Article dans une revue lirmm-01605411 v1
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A novel framework for biomedical entity sense induction

Juan Antonio A Lossio-Ventura , Jiang Bian , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
Journal of Biomedical Informatics, 2018, 84, pp.31-41. ⟨10.1016/j.jbi.2018.06.007⟩
Article dans une revue lirmm-01851988 v2
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AgroPortal: A vocabulary and ontology repository for agronomy

Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzale Yeumo et al.
Computers and Electronics in Agriculture, 2018, 144, pp.126-143. ⟨10.1016/j.compag.2017.10.012⟩
Article dans une revue lirmm-01679502 v1
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Harnessing the power of unified metadata in an ontology repository: the case of AgroPortal

Clement Jonquet , Anne Toulet , Biswanath Dutta , Vincent Emonet
Journal on Data Semantics, 2018, pp.1-31. ⟨10.1007/s13740-018-0091-5⟩
Article dans une revue lirmm-01852080 v2
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Building an effective and efficient background knowledge resource to enhance ontology matching

Amina Annane , Zohra Bellahsene , Faical Azouaou , Clement Jonquet
Journal of Web Semantics, 2018, 51, pp.51-68. ⟨10.1016/j.websem.2018.04.001⟩
Article dans une revue hal-01809627 v2
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Developing data interoperability using standards: A wheat community use case

Esther Dzale Yeumo , Michaël Alaux , Elizabeth Arnaud , Sophie Aubin , Ute Baumann et al.
F1000Research, 2017, 6 (1843), pp.1843. ⟨10.12688/f1000research.12234.1⟩
Article dans une revue lirmm-01652022 v2
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NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation

Marcos Martínez-Romero , Clement Jonquet , Martin J. O’connor , John Graybeal , Alejandro Pazos et al.
Journal of Biomedical Semantics, 2017, 8 (21), ⟨10.1186/s13326-017-0128-y⟩
Article dans une revue lirmm-01598848 v1
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Biomedical term extraction: overview and a new methodology

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
Information Retrieval Journal, 2016, Medical Information Retrieval, 19 (1), pp.59-99. ⟨10.1007/s10791-015-9262-2⟩
Article dans une revue lirmm-01274539 v1
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Towards a mixed approach to extract biomedical terms from text corpus

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
International journal of Knowledge Discovery in Bioinformatics, 2014, 4 (1), pp.1-15. ⟨10.4018/ijkdb.2014010101⟩
Article dans une revue lirmm-00859846 v2
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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources

Clement Jonquet , Paea Lependu , Sean Falconer , Adrien Coulet , Natalya F. Noy et al.
Journal of Web Semantics, 2011, 9 (3), pp.316-324. ⟨10.1016/j.websem.2011.06.005⟩
Article dans une revue lirmm-00622155 v2
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A UIMA Wrapper for the NCBO Annotator

William A. Baumgartner Jr , Christophe Roeder , Clement Jonquet , Nigam H. Shah , William A Baumgartner et al.
Bioinformatics, 2010, 26 (14), pp.1800-1801. ⟨10.1093/bioinformatics/btq250⟩
Article dans une revue hal-00504107 v2
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Building a Biomedical Ontology Recommender Web Service

Clement Jonquet , Mark A. Musen , Nigam H. Shah
Journal of Biomedical Semantics, 2010, 1 (S1), pp.29, Selected in Pr. Russ Altman’s 2011 Year in Review. ⟨10.1186/2041-1480-1-S1-S1⟩
Article dans une revue hal-00489093 v2
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BioPortal: ontologies and integrated data resources at the click of a mouse

Natalya F. Noy , Nigam H. Shah , Patricia L. Whetzel , Benjamin Dai , Michael Dorf et al.
Nucleic Acids Research, 2009, 37, pp.170-173. ⟨10.1093/nar/gkp440⟩
Article dans une revue hal-00492020 v2
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Comparison of concept recognizers for building the Open Biomedical Annotator

Nigam Shah , Nipun Bhatia , Clement Jonquet , Daniel L. Rubin , Annie P. Chiang et al.
BMC Bioinformatics, 2009, 10 (9:S14), pp.9:S14. ⟨10.1186/1471-2105-10-S9-S14⟩
Article dans une revue hal-00492026 v1
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Ontology-driven Indexing of Public Datasets for Translational Bioinformatics

Nigam H. Shah , Clement Jonquet , Annie P. Chiang , Atul J. Butte , Rong Chen et al.
BMC Bioinformatics, 2009, 10 (2:S1), pp.1-10. ⟨10.1186/1471-2105-10-S2-S1⟩
Article dans une revue hal-00492025 v2
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Agent-Grid Integration Language

Clement Jonquet , Pascal Dugénie , Stefano A. Cerri
Multiagent and Grid Systems - An International Journal of Cloud Computing , 2008, 4 (2), pp.167-211. ⟨10.3233/MGS-2008-4203⟩
Article dans une revue lirmm-00139691 v1
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The Grid Shared Desktop: a bootstrapping environment for collaboration

Pascal Dugénie , Philippe Lemoisson , Clement Jonquet , Monica Crubézy , Claude Lorenço
Advanced Technology for Learning, 2006, Special issue on Collaborative Learning, 3 (4), pp.241-249. ⟨10.2316/Journal.208.2006.4.208-0895⟩
Article dans une revue lirmm-00128326 v2
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The STROBE Model: Dynamic Service Generation on the Grid

Clement Jonquet , Stefano A. Cerri
Applied Artificial Intelligence, 2005, Special issue on Learning Grid Services, 19 (9-10), pp.967-1013. ⟨10.1080/08839510500234826⟩
Article dans une revue lirmm-00105302 v1
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Embrapa's contributions to integrate brazilian agricultural vocabularies: Agrotermos in AgroPortal

Milena Ambrosio Telles , Clement Jonquet , Bibiana Teixeira de Almeida , Jaudete Daltio , Celina Maki Takemura et al.
ONTOBRAS 2024 - 17th Seminar on Ontology Research in Brazil, C. M. Fonseca; V. Zamborlini; E. Cardoso; J. L. Emygdio, Oct 2024, Vitória, Brazil
Communication dans un congrès hal-04928168 v1
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Ontology Engineering and the FAIR principles: A Gap Analysis toward a FAIR-by-design methodology

María Poveda-Villalon , Daniel Garijo , Alejandra Gonzalez-Beltran , Clement Jonquet , Yann Le Franc
FOAM 2024 - FAIR principles for Ontologies and Metadata in Knowledge Management, C. Trojahn; D. Garijo; M. Poveda Villalón; C. Henrique Bernabé; A. Yu Lin, Jul 2024, Enschede, Netherlands. 15p
Communication dans un congrès hal-04678381 v1
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Normalisation automatique de variables issues de bases de données en agroécologie

Oussama Mechhour , Sandrine Auzoux , Clément Jonquet , Mathieu Roche
Atelier TextMine – Groupe de travail sur la fouille de textes, P. Cuxac, C. Lopez, Jan 2024, Dijon, France. pp.39-50
Communication dans un congrès hal-04483699 v1
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C3PO : Une ontologie pour la planification de cultures et les processus de production agricole

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Konstantin Todorov , Clement Jonquet
IC 2024 - 35es Journées francophones d'Ingénierie des Connaissances @PFIA 2024, AFIA-Association Française pour l'Intelligence Artificielle, Jul 2024, La Rochelle, France. 3p
Communication dans un congrès hal-04677414 v1
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Common Minimum Metadata for FAIR Semantic Artefacts

Clement Jonquet , Biswanath Dutta , Luiz O. Bonino da Silva Santos , Robert Pergl , Yann Le Franc
Onto4FAIR 2023 - 2nd Workshop on Ontologies for FAIR and FAIR Ontologies, C. Trojahn; L. O. Bonino da Silva Santos; G. Guizzardi; C. Jonquet, Jul 2023, Sherbrooke, Canada
Communication dans un congrès hal-04106533 v2
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Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology

Clement Jonquet , John Graybeal , Syphax Bouazzouni , Michael Dorf , Nicola Fiore et al.
ISWC 2023 - 22nd International Semantic Web Conference, Nov 2023, Athens, Greece. pp.38-58, ⟨10.1007/978-3-031-47243-5_3⟩
Communication dans un congrès hal-04088537 v2
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About versioning ontologies or any digital objects with clear semantics

Clement Jonquet , María Poveda-Villalón
DaMaLOS 2023 - 3rd Workshop on Metadata and Research (objects) Management for Linked Open Science, L. J. Castro; S. Schimmler; J. Dierkes; D. Dessì; D. Rebholz-Schuhmann, May 2023, Hersonissos (Crète), Greece. ⟨10.4126/FRL01-006444994⟩
Communication dans un congrès hal-04094847 v2
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Classification of Linking Problem Types for linking semantic data

Raphaël Conde Salazar , Clément Jonquet , Danai Symeonidou
SEMANTICS 2023 - 9th International Conference on Semantic Systems, Sep 2023, Leipzig, Germany. ⟨10.3233/SSW230014⟩
Communication dans un congrès hal-04206689 v1
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IndustryPortal: a Common Repository for FAIR Ontologies in Industry 4.0

Emna Amdouni , Arkopaul Sarkar , Clement Jonquet , Mohamed Hedi Karray
ISWC 2023 - 22nd International Semantic Web Conference, demo & poster session, Nov 2023, Athens, Greece
Communication dans un congrès hal-04207343 v1
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State-of-the-art browsing of SKOS resources in AgroPortal

Clement Jonquet , Syphax Bouazzouni
NKOS 2023 - NKOS Consolidated Workshop, J. Busch; D. Tudhope; M. Zeng, Nov 2023, Daegu, South Korea
Communication dans un congrès hal-04102864 v1
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Ontological Representation of Cultivated Plants: Linking Botanical and Agricultural Usages

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Konstantin Todorov , Clement Jonquet
MK 2022 - 1st Workshop on Modular Knowledge, L. Bozzato; V. Anita Carrier; T. Hahmann; A. Zimmermann, May 2022, Hersonissos, Greece. pp.165-173
Communication dans un congrès hal-03679652 v1
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FAIR or FAIRer? An integrated quantitative FAIRness assessment grid for semantic resources and ontologies

Emna Amdouni , Clement Jonquet
MTSR 2021 - 15th International Conference on Metadata and Semantics Research, Nov 2021, Madrid, Spain. pp.67-80, ⟨10.1007/978-3-030-98876-0_6⟩
Communication dans un congrès lirmm-03208544 v3
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Description sémantique des stades de développement phénologique des plantes, cas d’étude de la vigne

Catherine Roussey , Xavier Delpuech , Marc Raynal , Florence Amardeilh , Stéphan Bernard et al.
32èmes Journées Francophones d'Ingénierie des Connaissances (IC 2021), Jun 2021, Bordeaux, France. pp.30-38
Communication dans un congrès emse-03260085 v1
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Une méthodologie et un outil d'évaluation du niveau de "FAIRness" pour les ressources sémantiques : le cas d'AgroPortal

Emna Amdouni , Clement Jonquet
IC 2021 - 32es Journées francophones d'Ingénierie des Connaissances, Jun 2021, Bordeaux, France. pp.11-19
Communication dans un congrès lirmm-03232615 v1
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L’ontologie E-Phy, une base de connaissances pour le catalogue des produits phytopharmaceutiques autorisés en agriculture en France

Syphax Bouazzouni , Clement Jonquet
IC 2021 - 32es Journées francophones d'Ingénierie des Connaissances, AFIA, Jun 2021, Bordeaux, France. pp.105-112
Communication dans un congrès emse-03260693 v1
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Semantic Description of Plant Phenological Development Stages, starting with Grapevine

Catherine Roussey , Xavier Delpuech , Florence Amardeilh , Stephan Bernard , Clement Jonquet
MTSR 2020 - 14th International Conference on Metadata and Semantics Research, Dec 2020, Madrid, Spain. pp.257-268, ⟨10.1007/978-3-030-71903-6_25⟩
Communication dans un congrès hal-02996846 v1
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Crop Planning and Production Process Ontology (C3PO), a new model to assist diversified crop production

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Clement Jonquet
IFOW 2021 - 2nd Integrated Food Ontology Workshop, Sep 2021, Bolzano, Italy
Communication dans un congrès lirmm-03389513 v1
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Analysis of Term Reuse, Term Overlap and Extracted Mappings across AgroPortal Semantic Resources

Amir Laadhar , Elcio Abrahão , Clement Jonquet
EKAW 2020 - 22nd International Conference on Knowledge Engineering and Knowledge Management, Sep 2020, Bozen-Bolzano, Italy. pp.71-87, ⟨10.1007/978-3-030-61244-3_5⟩
Communication dans un congrès lirmm-02945172 v1
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Investigating One Million XRefs in Thirthy Ontologies from the OBO World

Amir Laadhar , Elcio Abrahão , Clement Jonquet
ICBO 2020 - 11th International Conference on Biomedical Ontologies, Sep 2020, Bozen-Bolzano, Italy. pp.G.1-12
Communication dans un congrès lirmm-02945170 v1
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Results of the Ontology Alignment Evaluation Initiative 2020

Mina Abd Nikooie Pour , Alsayed Algergawy , Reihaneh Amini , Daniel Faria , Irini Fundulaki et al.
OM 2020 - 15th International Workshop on Ontology Matching, Nov 2020, Athens, Greece. pp.92-138
Communication dans un congrès hal-04312966 v1
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Recent progresses in data and knowledge integration for decision support in agri-food chains

Sophie Aubin , Pierre Bisquert , Patrice Buche , Juliette Dibie-Barthelemy , Liliana Ibanescu et al.
IC 2019 - 30es Journées francophones d'Ingénierie des Connaissances, AFIA, Jul 2019, Toulouse, France. pp.43-59
Communication dans un congrès hal-02284538 v1
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Projet VisaTM : l’interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français

Fabienne Kettani , Stéphane Schneider , Sophie Aubin , Robert Bossy , Claire François et al.
IC 2018 - 29es journées francophones d'Ingénierie des Connaissances, Plateforme AFIA, Jul 2018, Nancy, France
Communication dans un congrès hal-04420482 v1
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Projet VisaTM : l'interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français

Fabienne Kettani , Stéphane Schneider , Sophie Aubin , Robert Bossy , Claire François et al.
IC 2018 - 29es Journées francophones d'Ingénierie des Connaissances, PFIA, Jul 2018, Nancy, France. pp.247-249
Communication dans un congrès hal-01839626 v2
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Challenges for ontology repositories and applications to biomedicine & agronomy

Clement Jonquet
SIMBig: Symposium on Information Management and Big Data, Sep 2017, Lima, Peru. pp.25-37
Communication dans un congrès lirmm-01679500 v1
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Enrichment of French Biomedical Ontologies with UMLS Concepts and Semantic Types for Biomedical Named Entity Recognition Though Ontological Semantic Annotation

Andon Tchechmedjiev , Clement Jonquet
LOTKS: Language, Ontology, Terminology and Knowledge Structures, Sep 2017, Montpellier, France
Communication dans un congrès lirmm-01605517 v2
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New Generation Metadata vocabulary for Ontology Description and Publication

Biswanath Dutta , Anne Toulet , Vincent Emonet , Clement Jonquet
11th International Conference on Metadata and Semantics Research (MTSR 2017), Nov 2017, Tallinn, Estonia. pp.173-185, ⟨10.1007/978-3-319-70863-8_17⟩
Communication dans un congrès lirmm-01605783 v1
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ICD-10 coding of death certificates with the NCBO and SIFR Annotators at CLEF eHealth 2017

Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Clement Jonquet
CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland
Communication dans un congrès lirmm-01605359 v1
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PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units

Pierre Monnin , Clement Jonquet , Joël Legrand , Amedeo Napoli , Adrien Coulet
Methods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩
Communication dans un congrès hal-01593184 v2
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French ConText: Détecter la négation, la temporalité et le sujet dans les textes cliniques Français

Amine Abdaoui , Andon Tchechmedjiev , William Digan , Sandra Bringay , Clement Jonquet
SIIM 2017 - 4ème Symposium sur l'Ingénierie de l'Information Médicale, Nov 2017, Toulouse, France
Communication dans un congrès lirmm-01656834 v1
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ViewpointS: When Social Ranking Meets the Semantic Web

Philippe Lemoisson , Guillaume Surroca , Clement Jonquet , Stefano A. Cerri
FLAIRS: Florida Artificial Intelligence Research Society, May 2017, Marco Island, FL, United States. pp.329-334
Communication dans un congrès lirmm-01598842 v1
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Two years later: the landscape of vocabularies and ontologies in the AgroPortal

Clement Jonquet , Anne Toulet , Vincent Emonet
International Workshop on sources and data integration in agriculture, food and environment using ontologies (IN-OVIVE 2017), Jul 2017, Montpellier, France
Communication dans un congrès lirmm-01598852 v1
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Réconciliation d'alignements multilingues dans BioPortal

Amina Annane , Vincent Emonet , Faiçal Azouaou , Clement Jonquet
IC 2016 - 27es Journées francophones d'Ingénierie des Connaissances, Jun 2016, Montpellier, France
Communication dans un congrès lirmm-01395900 v1
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Subjective and generic distance in ViewpointS: an experiment on WordNet

Guillaume Surroca , Philippe Lemoisson , Stefano A. Cerri , Clement Jonquet
WIMS: Web Intelligence, Mining and Semantics, Jun 2016, Nîmes, France. ⟨10.1145/2912845.2912870⟩
Communication dans un congrès lirmm-01397993 v1
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Reusing the NCBO BioPortal technology for agronomy to build AgroPortal

Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzalé-Yeumo et al.
ICBO 2016 - 7th International Conference on Biomedical Ontologies, P. Jaiswal; R. Hoehndorf, Aug 2016, Corvallis, OR, United States
Communication dans un congrès hal-01398251 v1
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MuEVo, a breast cancer Consumer Health Vocabulary built out of web forums

Solène Eholié , Mike Donald Tapi Nzali , Sandra Bringay , Clement Jonquet
SWAT4LS: Semantic Web Applications and Tools for Life Sciences, 2016, Amsterdam, Netherlands
Communication dans un congrès hal-01398253 v1
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Modèle de métadonnées dans un portail d'ontologies

Anne Toulet , Vincent Emonet , Clement Jonquet
6èmes Journées Francophones sur les Ontologies (JFO 2016), Shared best paper award, Oct 2016, Bordeaux, France
Communication dans un congrès lirmm-01397388 v1
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SIFR BioPortal : Un portail ouvert et générique d’ontologies et de terminologies biomédicales françaises au service de l’annotation sémantique

Clement Jonquet , Amina Annane , Khedidja Bouarech , Vincent Emonet , Soumia Melzi
JFIM: Journées Francophones d'Informatique Médicale, Jun 2016, Genève, Suisse
Communication dans un congrès hal-01398250 v1
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Selection and Combination of Heterogeneous Mappings to Enhance Biomedical Ontology Matching

Amina Annane , Zohra Bellahsene , Faiçal Azouaou , Clement Jonquet
20th International Conference on Knowledge Engineering and Knowledge Management (EKAW 2016), Nov 2016, Bologne, Italy. pp.19-33, ⟨10.1007/978-3-319-49004-5_2⟩
Communication dans un congrès lirmm-01395883 v1
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MuEVo, un vocabulaire multi-expertise (patient/médecin) dédié au cancer du sein

Solène Eholié , Mike Donald Tapi Nzali , Sandra Bringay , Clement Jonquet
IC: Ingénierie des Connaissances, Jun 2016, Montpellier, France
Communication dans un congrès hal-01379272 v1
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Automatic Biomedical Term Polysemy Detection

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
LREC 2016 - 10th International Conference on Language Resources and Evaluation, May 2016, Portorož, Slovenia. pp.1684-1688
Communication dans un congrès hal-04271452 v1
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Multilingual Mapping Reconciliation between English-French Biomedical Ontologies

Amina Annane , Vincent Emonet , Faiçal Azouaou , Clement Jonquet
WIMS: Web Intelligence, Mining and Semantics, Jun 2016, Nîmes, France. ⟨10.1145/2912845.2912847⟩
Communication dans un congrès lirmm-01395880 v1
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Roadmap for a multilingual BioPortal

Clement Jonquet , Vincent Emonet , Mark A. Musen
MSW: Multilingual Semantic Web, Jun 2015, Portoroz, Slovenia
Communication dans un congrès lirmm-01172218 v1
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Diffusion de systèmes de préférences par confrontation de points de vue, vers une simulation de la Sérendipité

Guillaume Surroca , Philippe Lemoisson , Clement Jonquet , Stefano A. Cerri
IC 2015 - 26es Journées francophones d'Ingénierie des Connaissances, INRIA, AFIA, Jul 2015, Rennes, France
Communication dans un congrès lirmm-01172223 v1
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Prédiction de la polysémie pour un terme biomédical

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
12ième Conférence francophone en Recherche d'Information et Applications (CORIA), Mar 2015, Paris, France. pp.437-452
Communication dans un congrès lirmm-01132654 v1
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Preference Dissemination by Sharing Viewpoints: Simulating Serendipity

Guillaume Surroca , Philippe Lemoisson , Clement Jonquet , Stefano A. Cerri
IC3K: Knowledge Discovery, Knowledge Engineering and Knowledge Management, Nov 2015, Lisbon, Portugal. pp.402-409, ⟨10.5220/0005636204020409⟩
Communication dans un congrès lirmm-01223078 v1
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AgroPortal : a proposition for ontology-based services in the agronomic domain

Clement Jonquet , Esther Dzalé-Yeumo , Elizabeth Arnaud , Pierre Larmande
IN-OVIVE, Jun 2015, Rennes, France
Communication dans un congrès lirmm-01172232 v1
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An Approach to Compare Bio-Ontologies Portals

Julien Grosjean , Lina F. Soualmia , Khedidja Bouarech , Clement Jonquet , Stefan J. Darmoni
MIE: Medical Informatics European, Aug 2014, Istanbul, Turkey
Communication dans un congrès lirmm-01052549 v1
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Integration of Linguistic and Web Information to Improve Biomedical Terminology Extraction

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
IDEAS: International Database Engineering & Applications Symposium, Jul 2014, Porto, Portugal. pp.265-269, ⟨10.1145/2628194.2628208⟩
Communication dans un congrès lirmm-01068547 v2
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Scoring semantic annotations returned by the NCBO Annotator

Soumia Melzi , Clement Jonquet
SWAT4LS: Semantic Web Applications and Tools for Life Sciences, Dec 2014, Berlin, Germany
Communication dans un congrès lirmm-01099860 v1
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Yet Another Ranking Function for Automatic Multiword Term Extraction

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
9th International Conference on Natural Language Processing (PolTAL), Sep 2014, Warsaw, Poland. pp.52-64, ⟨10.1007/978-3-319-10888-9_6⟩
Communication dans un congrès lirmm-01068556 v1
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Gestion du multilinguisme dans un portail d’ontologies: étude de cas pour le NCBO BioPortal

Clement Jonquet , Mark A. Musen
TOTh Workshop, Dec 2014, Bruxelles, Belgique
Communication dans un congrès lirmm-01099882 v1
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SIFR Project: The Semantic Indexing of French Biomedical Data Resources

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
SIMBig: Symposium on Information Management and Big Data, Juan Antonio Lossio-Ventura; Hugo Alatrista-Salas, Sep 2014, Cusco, Peru. pp.58-61
Communication dans un congrès lirmm-01112901 v1
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Biomedical Terminology Extraction: A new combination of Statistical and Web Mining Approaches

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
JADT: Journées d'Analyse statistique des Données Textuelles, Jun 2014, Paris, France. pp.421-432
Communication dans un congrès lirmm-01056598 v2
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REX:Innovation pédagogique via l'utilisation de tablettes numériques à Polytech Montpellier

Clement Jonquet , Christophe Fiorio , Philippe Papet , Stéphanie Belin-Mejean , Claudine Pastor et al.
TICE: Technologies de l'Information et de la Communication pour l'Enseignement, Nov 2014, Béziers, France. pp.97-106
Communication dans un congrès lirmm-01118757 v1
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Construction et évolution de connaissances par confrontation de points de vue : prototype pour la recherche d'information scientifique

Guillaume Surroca , Philippe Lemoisson , Clement Jonquet , Stefano A. Cerri
IC: Ingénierie des Connaissances, May 2014, Clermont-Ferrand, France. pp.175-186
Communication dans un congrès lirmm-00995948 v1
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Extraction automatique de termes combinant différentes informations

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
TALN: Traitement Automatique des Langues Naturelles, Jul 2014, Marseille, France. pp.407-412
Communication dans un congrès lirmm-01020051 v1
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Comparing BioPortal and HeTOP: towards a unique biomedical ontology portal?

Julien Grosjean , Lina F. Soualmia , Khedidja Bouarech , Clement Jonquet , Stefan J. Darmoni
IWBBIO: International Work-Conference on Bioinformatics and Biomedical Engineering, Apr 2014, Granada, Spain
Communication dans un congrès lirmm-01052583 v1
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Representing NCBO Annotator results in standard RDF with the Annotation Ontology

Soumia Melzi , Clement Jonquet
7th Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2014), Poster session, Dec 2014, Berlin, Germany
Communication dans un congrès lirmm-01099869 v1
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Combining C-value and Keyword Extraction Methods for Biomedical Terms Extraction

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
LBM: Languages in Biology and Medicine, Dec 2013, Tokyo, Japan
Communication dans un congrès lirmm-01019991 v1
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Negotiating the Web Science Curriculum through Shared Educational Artefacts

Madalina Croitoru , Stéphane Bazan , Stefano A. Cerri , Hugh C. Davis , Raffaella Folgieri et al.
3rd International Conference on Web Science (WebSci 2011), honorable mention award, Jun 2011, Koblenz, Germany. pp.14-17
Communication dans un congrès lirmm-00652085 v1
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The NCBO Annotator: OntologyBased Annotation as a Web Service

Patricia L. Whetzel , Clement Jonquet , Cherie H. Youn , Michael Dorf , Ray Fergerson et al.
2nd International Conference on Biomedical Ontology (ICBO 2011), Demo session, O. Bodenreider, M. E. Martone, A. Ruttenberg, Jul 2011, Buffalo, NY, United States. pp.302-303
Communication dans un congrès hal-04271625 v1
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The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies

Gautam K. Parai , Clement Jonquet , Rong Xu , Mark A. Musen , Nigam H. Shah
American Medical Informatics Association Annual Symposium, AMIA'10, Nov 2010, Washington, DC, United States. pp.6
Communication dans un congrès hal-00558033 v1
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Optimize First, Buy Later: Analyzing Metrics to Ramp-up Very Large Knowledge Bases

Paea Lependu , Natalya F. Noy , Clement Jonquet , Paul R. Alexander , Nigam H. Shah et al.
9th International Semantic Web Conference (ISWC 2010), Nov 2010, Shangai, China. pp.486-501
Communication dans un congrès hal-00558036 v1
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Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical

Clement Jonquet , Adrien Coulet , Nigam Shah , Mark A. Musen
21èmes Journées Francophones d'Ingénierie des Connaissances (IC 2010), Jun 2010, Nimes, France. pp.271-282
Communication dans un congrès hal-00488419 v1
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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources

Clement Jonquet , Paea Lependu , Sean M. Falconer , Adrien Coulet , Natalya F. Noy et al.
9th International Semantic Web Conference (ISWC 2010), Semantic Web Challenge winner award, Nov 2010, Shangai, China. pp.8
Communication dans un congrès hal-00557982 v1
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BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse

Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Benjamin Dai , Michael Dorf et al.
1st International Conference on Biomedical Ontology (ICBO 2009), Poster session, B. Smith, Jul 2009, Buffalo, United States. pp.197
Communication dans un congrès hal-04276312 v1
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Ontology Services for Semantic Applications in Healthcare and Life Sciences

Nigam H. Shah , Natasha F. Noy , Clement Jonquet , Adrien Coulet , Patricia L. Whetzel et al.
AMIA 2009 - American Medical Informatics Association Annual Symposium, Nov 2009, San Francisco, United States. pp.515
Communication dans un congrès hal-04276271 v1
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What Four Million Mappings Can Tell You about Two Hundred Ontologies

Amir Ghazvinian , Natasha F. Noy , Clement Jonquet , Nigam H. Shah , Mark A. Musen
8th International Semantic Web Conference (ISWC2009), Oct 2009, Washington DC, United States. pp.229-242
Communication dans un congrès hal-00489094 v1
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Un service Web pour l'annotation sémantique de données biomédicales avec des ontologies

Clement Jonquet , Nigam Shah , Mark A. Musen
13èmes Journées Francophones d'Informatique Médicale, JFIM'09, Apr 2009, Nice, France, France. pp.12
Communication dans un congrès hal-00492022 v1
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Prototyping a Biomedical Ontology Recommender Service

Clement Jonquet , Nigam Shah , Mark A. Musen
12th Annual Bio-Ontologies SIG Meeting, P. Lord, N. Shah, S.-A. Sansone, S. Stephens, L. Soldatova, Jun 2009, Stockholm, Sweden
Communication dans un congrès hal-04271509 v1
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NCBO Annotator: Semantic Annotation of Biomedical Data

Clement Jonquet , Nigam H. Shah , Cherie H. Youn , Mark A. Musen , Chris Callendar et al.
ISWC 2009 - 8th International Semantic Web Conference, Poster and Demo Session, Oct 2009, Washington, DC, United States
Communication dans un congrès hal-04276274 v1
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The Open Biomedical Annotator

Clement Jonquet , Nigam Shah , Mark A. Musen
AMIA Summit on Translational Bioinformatics, Mar 2009, San Francisco, CA, United States. pp.56-60
Communication dans un congrès hal-00492024 v1
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A System for Ontology-Based Annotation of Biomedical Data

Clement Jonquet , Mark A. Musen , Nigam Shah
International Workshop on Data Integration in The Life Sciences 2008, DILS'08, Jun 2008, Evry, France. pp.144-152
Communication dans un congrès hal-00279660 v1
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Service-Based Integration of Grid and Multi-Agent Systems Models

Clement Jonquet , Pascal Dugénie , Stefano A. Cerri
International Workshop on Service-Oriented Computing: Agents, Semantics, and Engineering, SOCASE'08:, May 2008, Estoril, Portugal. pp.56-68, ⟨10.1007/978-3-540-79968-9_5⟩
Communication dans un congrès lirmm-00288454 v1
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BioPortal: A Web Repository for Biomedical Ontologies and Data Resources

Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf , Nicholas Griffith et al.
7th International Semantic Web Conference (ISWC 2008), Poster and demo session, Oct 2008, Karlsruhe, Germany
Communication dans un congrès hal-04276324 v1
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The Principle of Immanence in GRID-Multiagent Integrated Systems

Pascal Dugénie , Clement Jonquet , Stefano A. Cerri
AWeSOMe'08: 4th International Workshop On Agents and Web Services Merging in Distributed Environments - OTM 2008 Workshops, Nov 2008, Monterrey, Mexico. pp.98-107, ⟨10.1007/978-3-540-88875-8_29⟩
Communication dans un congrès lirmm-00339373 v1
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Agent-Grid Integration Ontology

Frédéric Duvert , Clement Jonquet , Pascal Dugénie , Stefano A. Cerri
OTM: On the Move to Meaningful Internet Systems, Oct 2006, Montpellier, France. pp.136-146, ⟨10.1007/11915034_36⟩
Communication dans un congrès istex lirmm-00110569 v1
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Intégration orientée service des modèles Grid et Multi-Agents

Clement Jonquet , Stefano A. Cerri , Pascal Dugénie
JFSMA 2006 - 14e Journées Francophones sur les Systèmes Multi-Agents, Oct 2006, Annecy, France. pp.271-274
Communication dans un congrès lirmm-00107500 v1
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The Grid Shared Desktop for CSCL

Stefano A. Cerri , Monica Crubézy , Pascal Dugénie , Clement Jonquet , Philippe Lemoisson
eChallenges 2006 Conference, Oct 2006, Barcelona, Spain, pp.1493-1499
Communication dans un congrès lirmm-00128314 v1
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I-Dialogue: Modelling Agent Conversation by Streams and Lazy Evaluation

Clement Jonquet , Stefano A. Cerri
International Lisp Conference, ILC'05, Jun 2005, Stanford University, United States. pp.1
Communication dans un congrès hal-00250148 v1
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Agents Communicating for Dynamic Service Generation

Clement Jonquet , Stefano A. Cerri
GLS'04: 1st Workshop on GRID Learning Services at ITS'04, Aug 2004, Maceio, Brazil. pp.39-53
Communication dans un congrès lirmm-00108792 v1
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Les Agents comme des interpréteurs Scheme : Spécification dynamique par la communication

Clement Jonquet , Stefano A. Cerri
RFIA: Reconnaissance des Formes et Intelligence Artificielle, AFRIF-AFIA, Jan 2004, Toulouse, France. pp.779-788
Communication dans un congrès hal-00250149 v1
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Apprentissage Issu de la Communication pour des Agents Cognitifs

Clement Jonquet , Stefano A. Cerri
JFSMA 2003 - 11e Journées Francophones sur les Systèmes Multi-Agents, Nov 2003, Hammamet, Tunisie. pp.83-87
Communication dans un congrès lirmm-00191963 v1
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Cognitive Agents Learning by Communicating

Clement Jonquet , Stefano A. Cerri
ALCAA: Agents Logiciels - Coopération - Apprentissage - Activités Humaines, Sep 2003, Bayonne, France
Communication dans un congrès lirmm-00191962 v1
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Dynamic Learning Agents and Enhanced Presence on the Grid

Stefano A. Cerri , Marc Eisenstadt , Clement Jonquet
3rd International Workshop on GRID Infrastructure to Support Future Technology Enhanced Learning (LeGE-WG), Dec 2003, Berlin, Germany
Communication dans un congrès lirmm-00269487 v1

Semantic artefact and ontology services for long-term data interpretation

Clement Jonquet
PV 2023 - 10th Conference on Ensuring Long-Term Preservation and Adding Value to Scientific and Technical Data, May 2023, Geneva, Switzerland. 2023
Poster de conférence hal-04079485 v1
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Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology

Clement Jonquet
Vocabulary Symposium, Nov 2023, Acton, Australia. Zenodo, 2023, ⟨10.5281/zenodo.10020455⟩
Poster de conférence hal-04286581 v1
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FAIR-IMPACT Expanding FAIR solutions across EOSC

Sara Pittonet Gaiarin , Kevin Ashley , Clement Jonquet , Ingrid Dillo
CORDI 2023 - 1st Conference on Research Data Infrastructure, Sep 2023, Karlsruhe, Germany. 2
Poster de conférence hal-04313031 v1
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O'FAIRe: Ontology FAIRness Evaluator in the AgroPortal semantic resource repository

Emna Amdouni , Syphax Bouazzouni , Clement Jonquet
ESWC 2022 - 19th Extended Semantic Web Conference, May 2022, Hersonissos, Greece. , Poster and demonstration, 13384, pp.89-94, 2022, Lecture Notes in Computer Science. ⟨10.1007/978-3-031-11609-4_17⟩
Poster de conférence lirmm-03630543 v3

Minimum metadata for FAIR Semantic artefacts

Yann Le Franc , Biswanath Dutta , Clement Jonquet , Robert Pergl
SciDataCon International Data Week, Jun 2022, Seoul, South Korea. , 1079
Poster de conférence hal-04313036 v1
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Adoption of BioPortal's Ontology Registry Software: The Emerging OntoPortal Community

John Graybeal , Clement Jonquet , Nicola Fiore , Mark A. Musen
RDA P13 - 13th Research Data Alliance Plenary Meeting, Apr 2019, Philadelphia, United States.
Poster de conférence lirmm-02360625 v1
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D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity

Sophie Aubin , Anne-Francoise Adam-Blondon , Michael Alaux , Mouhamadou Ba , Stéphan Bernard et al.
14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩
Poster de conférence lirmm-02351000 v1
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Maitriser une technologie de gestion des ontologies et vocabulaires en France : défis et enjeux

Clement Jonquet
SemWeb.Pro, Nov 2018, Paris, France
Poster de conférence lirmm-01852073 v2
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AgroPortal: an ontology repository for agronomy

Clement Jonquet
11th Conference on Information Technology in Agriculture, Food and the Environment (EFITA 2017), Poster session, Jul 2017, Montpellier, France. , 2017
Poster de conférence lirmm-01598854 v2
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The Agronomic Linked Data (AgroLD) project

Clement Jonquet
11th Conference on Information Technology in Agriculture, Food and the Environment (EFITA 2017), Poster session, Jul 2017, Montpellier, France. , 2017
Poster de conférence lirmm-01598856 v1
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AgroPortal: an open repository of ontologies and vocabularies for agriculture and nutrition data

Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzalé Yeumo et al.
Ben Schaap. GODAN Summit, Sep 2016, New York, NY, United States. , 2016
Poster de conférence hal-01398252 v1
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AgroPortal : A Proposition for Ontology-Based Services in the Agronomic Domain

Clement Jonquet , Esther Dzalé-Yeumo , Elizabeth Arnaud , Pierre Larmande , Anne Toulet et al.
XXIV International Plant & Animal Genome Conference (PAG 2016), Poster session, Jan 2016, San Diego, United States. , P0343, 2016, Systems Biology and Ontologies, Poster session
Poster de conférence lirmm-01397465 v1
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A Way to Automatically Enrich Biomedical Ontologies

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
P. Evaggelia; M. Sofian; K. Georgia; M. Amelie; T. Letizia; M. Ioana; S. Kostas. 19th International Conference on Extending Database Technology (EDBT 2016), Poster session, Mar 2016, Bordeaux, France. OpenProceedings.org, pp.676-677, 2016, ⟨10.5441/002/edbt.2016.82⟩
Poster de conférence hal-01274540 v1
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Scénarios pédagogiques numériques via l'utilisation de l'iPad par et pour les étudiants de Polytech Montpellier

Clement Jonquet , Christophe Fiorio , Philippe Papet , Stéphanie Belin-Mejean , Cellule Ipad Des Enseignants de Polytech Montpellier
Karsenti, T. 2ème Sommet iPad en éducation, May 2014, Montreal, Canada. , 2014
Poster de conférence lirmm-00924265 v1

Facilitating efficient knowledge management and discovery in the Agronomic Sciences

Aravind Venkatesan , Pierre Larmande , Clement Jonquet , Manuel Ruiz , Patrick Valduriez
4th Research Data Alliance Plenary Meeting (RDA P4), Sep 2014, Amsterdam, Netherlands. , 2014
Poster de conférence lirmm-01071822 v1
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BIOTEX: A system for Biomedical Terminology Extraction, Ranking, and Validation

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
13th International Semantic Web Conference (ISWC 2014), poster & demo session, Oct 2014, Riva del Garda, Italy. , 13th International Semantic Web Conference - Posters & Demonstrations, CEUR Workshop Proceedings (1272), pp.157-160, 2014, CEUR Workshop Proceedings, n° 1272
Poster de conférence lirmm-01112894 v1
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Semantic Annotation Workflow using Bio-Ontologies

Emmanuel Castanier , Clement Jonquet , Soumia Melzi , Pierre Larmande , Manuel Ruiz et al.
Workshop on Crop Ontology and Phenotyping Data Interoperability, Mar 2014, Montpellier, France. , 1 p., 2014
Poster de conférence lirmm-01052546 v1

BioPortal : ontologies et ressources de données biomédicales à portée de main

Clement Jonquet
1er Symposium sur l'Ingénierie de l'Information Médicale (SIIM 2011), Démonstration session, Jun 2011, Toulouse, France
Poster de conférence hal-04271598 v1
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Ontology Web Services for Semantic Applications

Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Clement Jonquet , Adrien Coulet et al.
Pacific Symposium on Biocomputing (PSB 2010), Poster session, Jan 2010, Waimea, United States.
Poster de conférence hal-04297858 v1
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Ontology-based Tools to Enhance the Curation Workflow

Patricia L. Whetzel , Nigam H. Shah , Natasha F. Noy , Clement Jonquet , Cherie H. Youn et al.
International Society for Biocuration. 4th International Biocuration Conference (Biocuration 2010), Poster session, Oct 2010, Tokyo, Japan. , W2-5, pp.47
Poster de conférence hal-04276262 v1
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Ontology-based Web Services for Data Annotation and Integration

Patricia L. Whetzel , Nigam H. Shah , Natalya Noy , Clement Jonquet , Adrien Coulet et al.
18th International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Technology track, Jul 2010, Boston, United States. , TT33, 2010
Poster de conférence lirmm-01605892 v1

Ontology-based Web Services for Semantic Applications

Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Clement Jonquet , Adrien Coulet et al.
13th Annual Bio-Ontologies SIG Meeting, Poster session, Jul 2010, Boston, United States.
Poster de conférence hal-04271647 v1

BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse

Patricia L. Whetzel , Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf et al.
17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2009) and 8th European Conference on Computational Biology (ECCB 2009), Poster session, Jun 2009, Stockholm, Sweden.
Poster de conférence hal-04297940 v1

BioPortal: A Web Repository for Biomedical Ontologies and Data Resources

Patricia L. Whetzel , Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf et al.
3rd International Biocuration Conference (Biocuration 2009), Poster session, Apr 2009, Berlin, Germany
Poster de conférence hal-04300487 v1

BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse

Patricia L. Whetzel , Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf et al.
12th Annual Bio-Ontologies SIG Meeting, Poster session, Jun 2009, Stockholm, Sweden
Poster de conférence hal-04297907 v1
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BioPortal: A Web Repository for Biomedical Ontologies and Data Resources

Patricia L. Whetzel , Natasha F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf et al.
Pacific Symposium on Biocomputing (PSB 2009), Poster session, Jan 2009, Waimea, HI, United States.
Poster de conférence hal-04297888 v1

Billion Data Points Trapped in International Data Repository Daring rescue Planned!

Simon N. Twigger , Jennifer Smith , Rajni Nigam , Clement Jonquet , Mark A. Musen
3rd International Biocuration Conference (Biocuration 2009), Poster session, Apr 2009, Berlin, Germany
Poster de conférence hal-04300504 v1

BioPortal: ontologies and data resources with the click of a mouse.

Mark A. Musen , Nigam H. Shah , Natasha F. Noy , Benjamin Dai , Michael Dorf et al.
American Medical Informatics Association Annual Symposium (AMIA 2008), Demonstration session, Nov 2008, Washington DC, United States. pp.1223-4, 2008
Poster de conférence hal-04300575 v1
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Improving data identification and tagging for more effective decision making in agriculture

Pascal Neveu , Romain David , Clement Jonquet
Leisa Armstrong. Improving Data Management and Decision Support Systems in Agriculture, 85, Burleigh Dodds Science Publishing, 2020, Series in Agricultural Science, 978-1-78676-340-2
Chapitre d'ouvrage hal-02164149 v1
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Semantic Indexing of French Biomedical Data Resources

Clement Jonquet
Project Repository Journal, 3, , pp.16-19, 2019
Chapitre d'ouvrage lirmm-02360615 v1
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Learning Agents and Enhanced Presence for Generation of Services on the Grid

Clement Jonquet , Marc Eisenstadt , Stefano A. Cerri
Towards the Learning GRID: Advances in Human Learning Services, 127, IOS Press, pp.203-213, 2005, Frontiers in Artificial Intelligence and Applications, 978-1-58603-534-1 (print) 978-1-60750-123-7 (online)
Chapitre d'ouvrage lirmm-00106610 v1
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D4.2 - FAIR semantic artefact lifecycle from engineering, to sharing

Clement Jonquet , Nina Grau , María Poveda-Villalon , Daniel Garijo , Antony Wilson et al.
D4.2, FAIR-IMPACT. 2025, pp.14643279
Rapport (rapport contrat/projet) hal-04928493 v1
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D1.3 - Recommendations for a FAIR EOSC - White Paper of the FAIR-IMPACT Synchronisation Force

Marjan Grootveld , Anne Sofie Fink , Clement Jonquet , Esteban González Guardia , Ingrid Dillo et al.
Grant Agreement No. 101057344, FAIR-IMPACT. 2025, pp.D1.3
Rapport (rapport contrat/projet) hal-05009365 v1
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D4.6 - Use case driven validation of semantic artefact exploitation within data repositories

Sophie Aubin , Carmen Corre , Clement Jonquet , Llorenç Cabrera-Bosquet , Ilaria Rosati et al.
FAIR-IMPACT. 2025
Rapport hal-05024648 v1
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M4.5 - Internal and external use case evaluation and demonstrators

Sophie Aubin , Carmen Corre , Clement Jonquet , Andrea Scharnhorst
FAIR-IMPACT. 2025, 55 p
Rapport hal-05024763 v1
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D4.1 - Semantic artefact governance models and disciplinary approaches for inclusion within EOSC

Parham Ramezani , Nina Grau , Clement Jonquet , Nicola Fiore
D4.1, FAIR-IMPACT. 2024, 52p
Rapport hal-04678465 v1
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OntoPortal Workshop 2024 Report

Clement Jonquet , Jennifer L Vendetti , Guillaume Alviset , Ilaria Rosati , John Graybeal et al.
INRAE; Stanford University. 2024
Rapport hal-04891214 v1
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D4.3 - Specification of shared metadata description of semantic artefacts and their catalogues including common reference API

Antony Wilson , Clement Jonquet
D4.3, FAIR-IMPACT. 2024
Rapport (rapport contrat/projet) hal-04678453 v1
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M4.2 - Processes & tools to engineer FAIR semantic artefacts

María Poveda-Villalon , Daniel Garijo , Alejandra Gonzalez-Beltran , Yann Le Franc , Clement Jonquet et al.
MS4.2, FAIR-IMPACT. 2024
Rapport hal-04493130 v1
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M4.4 - Review of Semantic Artefact Catalogues and guidelines for serving FAIR semantic artefacts in EOSC

Clement Jonquet , Nina Grau
M4.4, FAIR-IMPACT. 2024, 44p
Rapport hal-04678461 v1
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M4.3 - Specification of semantic artefact description

Alejandra Gonzalez-Beltran , Antony Wilson , Biswanath Dutta , Daniel Garijo , Clement Jonquet et al.
MS4.3, FAIR-IMPACT. 2024
Rapport hal-04493123 v1
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M1.7 - First synchronisation workshop

Marjan Grootveld , Joy Davidson , Ingrid Dillo , Maaike Verburg , Ryan O'Connor et al.
FAIR-IMPACT. 2023
Rapport hal-04290941 v1
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D2.1 Targeted landscape analysis report

Joy Davidson , Sara Pittonet , Sandra Boerman , Loek Brinkman , Clement Jonquet et al.
D2.1, FAIR-IMPACT. 2023
Rapport lirmm-04605918 v1
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OntoPortal Workshop 2023 Report

Clement Jonquet , Syphax Bouazzouni , John Graybeal , Jennifer L. Vendetti
INRAE, Université de Montpellier, Stanford University. 2023, pp.17
Rapport hal-04494573 v1
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M4.1 - Semantic artefact governance models: example of community practices

Parham Ramezani , Nina Grau , Clement Jonquet , Nicola Fiore
MS4.1, FAIR-IMPACT. 2023
Rapport hal-04330046 v1
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D5.2 - Metrics for automated FAIR software assessment in a disciplinary context

Neil Chue Hong , Elena Breitmoser , Mario Antonioletti , Joy Davidson , Daniel Garijo et al.
D5.2, FAIR-IMPACT. 2023
Rapport lirmm-04605844 v1
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OntoPortal Workshop 2022 Report

Clement Jonquet , John Graybeal
Université de Montpellier; Stanford University. 2022, 16p
Rapport hal-04087929 v1
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Assessing the Practice of Ontology Metadata: A Survey Result

Anne Toulet , Biswanath Dutta , Clement Jonquet
[Research Report] University of Montpellier. 2018
Rapport (rapport de recherche) lirmm-02315001 v1
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A Map of Agri-food Data Standards

Valeria Pesce , Jeni Tennison , Lisette Mey , Clement Jonquet , Anne Toulet et al.
[Research Report] F1000 7-177, Godan. 2018
Rapport (rapport de recherche) lirmm-01964791 v1
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YAM-BIO – Results for OAEI 2017

Amina Annane , Zohra Bellahsene , Faiçal Azouaou , Clement Jonquet
University of Montpellier. 2017, pp.1-6
Rapport lirmm-01679503 v1
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Landscaping the use of semantics to enhance the interoperability of agricultural data

Sophie Aubin , Caterina Caracciolo , Panagiotis Zervas , Pascal Aventurier , Patrice Buche et al.
[Research Report] Research Data Alliance. 2017, pp.59
Rapport (rapport de recherche) hal-02607815 v1
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Help will be provided for this task: Ontology-Based Annotator Web Service

Clement Jonquet , Mark A. Musen , Nigam H. Shah
Stanford University. 2008, pp.BMIR2008-1317
Rapport hal-04312971 v1
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Ontrez Project Report

Nigam H. Shah , Clement Jonquet
Stanford University. 2007, pp.BMIR-2007-1289
Rapport hal-04312974 v1
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AGIL Specifications

Clement Jonquet , Pascal Dugénie , Stefano A. Cerri
06030, 2006, pp.32
Rapport lirmm-00102805 v1
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Communication Agent et Interprétation Scheme pour l’apprentissage au méta-niveau

Clement Jonquet
Université Montpellier 2. 2003, pp.88
Rapport hal-04271531 v1
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Dynamic Service Generation: Agent interactions for service exchange on the Grid

Clement Jonquet
Software Engineering [cs.SE]. Université Montpellier II - Sciences et Techniques du Languedoc, 2006. English. ⟨NNT : ⟩
Thèse tel-00115389 v1
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Joint Proceedings of the Onto4FAIR 2023 Workshops

Cassia Trojahn , Luiz Olavo Bonino da Silva Santos , Giancarlo Guizzardi , Clement Jonquet , Megan Katsumi et al.
Onto4FAIR 2023 Workshops, pp.1-31, 2023
Proceedings/Recueil des communications hal-04312604 v1
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Proceedings of the 2nd International Workshop on Semantics for Biodiversity (S4BioDiv 2017)

Alsayed Algergawy , Naouel Karam , Friederike Klan , Clement Jonquet
S4BioDiv: International Workshop on Semantics for Biodiversity, Oct 2017, Vienna, Australia. Ceur-1933, CEUR, 2017
Proceedings/Recueil des communications lirmm-01605671 v1
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Actes de la 9ème conférence des Technologies de l’Information et de la Communication pour l’Enseignement (TICE 2014)

Claude Frasson , Jean-Marc Labat , Fabien Gandon , David Cassagne , Clement Jonquet et al.
Claude Frasson; Jean-Marc Labat; Fabien Gandon; David Cassagne; Clement Jonquet; Stefano A. Cerri; Philippe Pujas. TICE: Technologies de l’Information et de la Communication pour l’Enseignement, Nov 2014, Béziers, France. IUT Béziers, 2014
Proceedings/Recueil des communications hal-01187103 v1
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Proceedings of the 1st International Workshop on Semantics for Biodiversity (S4BioDiv 2013)

Pierre Larmande , Elizabeth Arnaud , Isabelle Mougenot , Clement Jonquet , Thérèse Libourel Rouge et al.
Ceur-979, pp.001-131, 2013
Proceedings/Recueil des communications lirmm-00831757 v1