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Clement Jonquet

Senior Researcher – INRAE (MISTEA), Associate Researcher – University of Montpellier (LIRMM)
94%
Open access
169
Documents
Current affiliations
  • 1100640
  • 1096435
Researcher identifiers
Web site
  • http://www.lirmm.fr/~jonquet/

Publications

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A maturity model for catalogues of semantic artefacts

Oscar Corcho , Fajar Ekaputra , Ivan Heibi , Clement Jonquet , Andras Micsik
Scientific Data , 2024, 11 (1), pp.479. ⟨10.1038/s41597-024-03185-4⟩
Journal articles lirmm-04290896v1
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C3PO: a crop planning and production process ontology and knowledge graph

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Konstantin Todorov , Clement Jonquet
Frontiers in Artificial Intelligence, 2023, 6, pp.1187090. ⟨10.3389/frai.2023.1187090⟩
Journal articles hal-04305067v1
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O'FAIRe makes you an offer: Metadata-based Automatic FAIRness Assessment for Ontologies and Semantic Resources

Emna Amdouni , Syphax Bouazzouni , Clement Jonquet
International Journal of Metadata, Semantics and Ontologies, 2022, 16 (1), pp.16-46. ⟨10.1504/IJMSO.2022.131133⟩
Journal articles lirmm-03630233v2
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French FastContext: a Publicly Accessible System for Detecting Negation, Temporality and Experiencer in French Clinical Notes

Mehdi Mirzapour , Amine Abdaoui , Andon Tchechmedjiev , William Digan , Sandra Bringay
Journal of Biomedical Informatics, 2021, 117, pp.103733. ⟨10.1016/j.jbi.2021.103733⟩
Journal articles hal-03184001v1
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FAIRness Literacy: The Achilles’ Heel of Applying FAIR Principles

Romain David , Laurence Mabile , Alison Specht , Sarah Stryeck , Mogens Thomsen
CODATA Data Science Journal, 2020, 19 (32), pp.1-11. ⟨10.5334/dsj-2020-032⟩
Journal articles hal-02483307v2
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39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition

Caterina Caracciolo , Sophie Aubin , Clement Jonquet , Emna Amdouni , Romain David
CODATA Data Science Journal, 2020, 19 (1), ⟨10.5334/dsj-2020-047⟩
Journal articles hal-03059376v1
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PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison

Pierre Monnin , Joël Legrand , Graziella Husson , Patrice Ringot , Andon Tchechmedjiev
BMC Bioinformatics, 2019, 20 (S4), ⟨10.1186/s12859-019-2693-9⟩
Journal articles hal-02103899v1
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Agronomic Linked Data (AgroLD): A knowledge-based system to enable integrative biology in agronomy

Aravind Venkatesan , Gildas Tagny Ngompe , Nordine El Hassouni , Imène Chentli , Valentin Guignon
PLoS ONE, 2018, 13 (11), pp.e0198270. ⟨10.1371/journal.pone.0198270⟩
Journal articles lirmm-01964772v1
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Building an effective and efficient background knowledge resource to enhance ontology matching

Amina Annane , Zohra Bellahsene , Faical Azouaou , Clement Jonquet
Journal of Web Semantics, 2018, 51, pp.51-68. ⟨10.1016/j.websem.2018.04.001⟩
Journal articles hal-01809627v2
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Harnessing the power of unified metadata in an ontology repository: the case of AgroPortal

Clement Jonquet , Anne Toulet , Biswanath Dutta , Vincent Emonet
Journal on Data Semantics, 2018, pp.1-31. ⟨10.1007/s13740-018-0091-5⟩
Journal articles lirmm-01852080v2
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Enhanced Functionalities for Annotating and Indexing Clinical Text with the NCBO Annotator+

Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Soumia Melzi , Jitendra Jonnagaddala
Bioinformatics, 2018, 34 (11), pp.1962-1965. ⟨10.1093/bioinformatics/bty009⟩
Journal articles lirmm-01680514v1
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A novel framework for biomedical entity sense induction

Juan Antonio A Lossio-Ventura , Jiang Bian , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
Journal of Biomedical Informatics, 2018, 84, pp.31-41. ⟨10.1016/j.jbi.2018.06.007⟩
Journal articles lirmm-01851988v2
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ViewpointS: capturing formal data and informal contributions into an adaptive knowledge graph

Philippe Lemoisson , Guillaume Surroca , Clement Jonquet , Stefano A. Cerri
International Journal of Knowledge and Learning, 2018, 12 (2), ⟨10.1504/IJKL.2017.10012219⟩
Journal articles lirmm-01605411v1
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AgroPortal: A vocabulary and ontology repository for agronomy

Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzale Yeumo
Computers and Electronics in Agriculture, 2018, 144, pp.126-143. ⟨10.1016/j.compag.2017.10.012⟩
Journal articles lirmm-01679502v1
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SIFR Annotator: Ontology-Based Semantic Annotation of French Biomedical Text and Clinical Notes

Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Stella Zevio , Clement Jonquet
BMC Bioinformatics, 2018, 19 (1), pp.405-431. ⟨10.1186/s12859-018-2429-2⟩
Journal articles lirmm-01934127v1
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AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture

Lisa Harper , Jacqueline Campbell , Ethalinda K S Cannon , Sook Jung , Monica Poelchau
Database -Weston-, 2018, 2018, pp.#bay088. ⟨10.1093/database/bay088⟩
Journal articles lirmm-01964769v1
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Developing data interoperability using standards: A wheat community use case

Esther Dzale Yeumo , Michaël Alaux , Elizabeth Arnaud , Sophie Aubin , Ute Baumann
F1000Research, 2017, 6 (1843), pp.1843. ⟨10.12688/f1000research.12234.1⟩
Journal articles lirmm-01652022v2
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NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation

Marcos Martínez-Romero , Clement Jonquet , Martin J. O’connor , John Graybeal , Alejandro Pazos
Journal of Biomedical Semantics, 2017, 8 (21), ⟨10.1186/s13326-017-0128-y⟩
Journal articles lirmm-01598848v1
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Biomedical term extraction: overview and a new methodology

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
Information Retrieval Journal, 2016, Medical Information Retrieval, 19 (1), pp.59-99. ⟨10.1007/s10791-015-9262-2⟩
Journal articles lirmm-01274539v1
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Towards a mixed approach to extract biomedical terms from text corpus

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
International journal of Knowledge Discovery in Bioinformatics, 2014, 4 (1), pp.1-15. ⟨10.4018/ijkdb.2014010101⟩
Journal articles lirmm-00859846v2
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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources

Clement Jonquet , Paea Lependu , Sean Falconer , Adrien Coulet , Natalya F. Noy
Journal of Web Semantics, 2011, 9 (3), pp.316-324. ⟨10.1016/j.websem.2011.06.005⟩
Journal articles lirmm-00622155v2
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A UIMA Wrapper for the NCBO Annotator

William A. Baumgartner Jr , Christophe Roeder , Clement Jonquet , Nigam H. Shah , William A Baumgartner
Bioinformatics, 2010, 26 (14), pp.1800-1801. ⟨10.1093/bioinformatics/btq250⟩
Journal articles hal-00504107v2
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Building a Biomedical Ontology Recommender Web Service

Clement Jonquet , Mark A. Musen , Nigam H. Shah
Journal of Biomedical Semantics, 2010, 1 (S1), pp.29, Selected in Pr. Russ Altman’s 2011 Year in Review. ⟨10.1186/2041-1480-1-S1-S1⟩
Journal articles hal-00489093v2
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Ontology-driven Indexing of Public Datasets for Translational Bioinformatics

Nigam H. Shah , Clement Jonquet , Annie P. Chiang , Atul J. Butte , Rong Chen
BMC Bioinformatics, 2009, 10 (2:S1), pp.1-10. ⟨10.1186/1471-2105-10-S2-S1⟩
Journal articles hal-00492025v2
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BioPortal: ontologies and integrated data resources at the click of a mouse

Natalya F. Noy , Nigam H. Shah , Patricia L. Whetzel , Benjamin Dai , Michael Dorf
Nucleic Acids Research, 2009, 37, pp.170-173. ⟨10.1093/nar/gkp440⟩
Journal articles hal-00492020v2
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Comparison of concept recognizers for building the Open Biomedical Annotator

Nigam Shah , Nipun Bhatia , Clement Jonquet , Daniel L. Rubin , Annie P. Chiang
BMC Bioinformatics, 2009, 10 (9:S14), pp.9:S14. ⟨10.1186/1471-2105-10-S9-S14⟩
Journal articles hal-00492026v1
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Agent-Grid Integration Language

Clement Jonquet , Pascal Dugénie , Stefano A. Cerri
Multiagent and Grid Systems - An International Journal of Cloud Computing , 2008, 4 (2), pp.167-211. ⟨10.3233/MGS-2008-4203⟩
Journal articles lirmm-00139691v1
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The Grid Shared Desktop: a bootstrapping environment for collaboration

Pascal Dugénie , Philippe Lemoisson , Clement Jonquet , Monica Crubézy , Claude Lorenço
Advanced Technology for Learning, 2006, Special issue on Collaborative Learning, 3 (4), pp.241-249. ⟨10.2316/Journal.208.2006.4.208-0895⟩
Journal articles lirmm-00128326v2
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The STROBE Model: Dynamic Service Generation on the Grid

Clement Jonquet , Stefano A. Cerri
Applied Artificial Intelligence, 2005, Special issue on Learning Grid Services, 19 (9-10), pp.967-1013. ⟨10.1080/08839510500234826⟩
Journal articles lirmm-00105302v1
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Normalisation automatique de variables issues de bases de données en agroécologie

Oussama Mechhour , Sandrine Auzoux , Clément Jonquet , Mathieu Roche
Atelier TextMine – Groupe de travail sur la fouille de textes, P. Cuxac, C. Lopez, Jan 2024, Dijon, France. pp.39-50
Conference papers hal-04483699v1
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Classification of Linking Problem Types for linking semantic data

Raphaël Conde Salazar , Clément Jonquet , Danai Symeonidou
SEMANTICS 2023 - 9th International Conference on Semantic Systems, Sep 2023, Leipzig, Germany. ⟨10.3233/SSW230014⟩
Conference papers hal-04206689v1
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About versioning ontologies or any digital objects with clear semantics

Clement Jonquet , María Poveda-Villalón
DaMaLOS 2023 - 3rd Workshop on Metadata and Research (objects) Management for Linked Open Science, L. J. Castro; S. Schimmler; J. Dierkes; D. Dessì; D. Rebholz-Schuhmann, May 2023, Hersonissos (Crète), Greece. ⟨10.4126/FRL01-006444994⟩
Conference papers hal-04094847v2
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Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology

Clement Jonquet , John Graybeal , Syphax Bouazzouni , Michael Dorf , Nicola Fiore
ISWC 2023 - 22nd International Semantic Web Conference, Nov 2023, Athens, Greece. pp.38-58, ⟨10.1007/978-3-031-47243-5_3⟩
Conference papers hal-04088537v2
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State-of-the-art browsing of SKOS resources in AgroPortal

Clement Jonquet , Syphax Bouazzouni
NKOS 2023 - NKOS Consolidated Workshop, J. Busch; D. Tudhope; M. Zeng, Nov 2023, Daegu, South Korea
Conference papers hal-04102864v1
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IndustryPortal: a Common Repository for FAIR Ontologies in Industry 4.0

Emna Amdouni , Arkopaul Sarkar , Clement Jonquet , Mohamed Hedi Karray
ISWC 2023 - 22nd International Semantic Web Conference, demo & poster session, Nov 2023, Athens, Greece
Conference papers hal-04207343v1
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Common Minimum Metadata for FAIR Semantic Artefacts

Clement Jonquet , Biswanath Dutta , Luiz O. Bonino da Silva Santos , Robert Pergl , Yann Le Franc
Onto4FAIR 2023 - 2nd Workshop on Ontologies for FAIR and FAIR Ontologies, C. Trojahn; L. O. Bonino da Silva Santos; G. Guizzardi; C. Jonquet, Jul 2023, Sherbrooke, Canada
Conference papers hal-04106533v2
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Ontological Representation of Cultivated Plants: Linking Botanical and Agricultural Usages

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Konstantin Todorov , Clement Jonquet
MK 2022 - 1st Workshop on Modular Knowledge, L. Bozzato; V. Anita Carrier; T. Hahmann; A. Zimmermann, May 2022, Hersonissos, Greece. pp.165-173
Conference papers hal-03679652v1
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Crop Planning and Production Process Ontology (C3PO), a new model to assist diversified crop production

Baptiste Darnala , Florence Amardeilh , Catherine Roussey , Clement Jonquet
2nd Integrated Food Ontology Workshop (IFOW 2021), Sep 2021, Bolzano, Italy
Conference papers lirmm-03389513v1
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Une méthodologie et un outil d'évaluation du niveau de "FAIRness" pour les ressources sémantiques : le cas d'AgroPortal

Emna Amdouni , Clement Jonquet
IC 2021 - 32es Journées francophones d'Ingénierie des Connaissances, Jun 2021, Bordeaux, France. pp.11-19
Conference papers lirmm-03232615v1
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L’ontologie E-Phy, une base de connaissances pour le catalogue des produits phytopharmaceutiques autorisés en agriculture en France

Syphax Bouazzouni , Clement Jonquet
IC 2021 - 32es Journées francophones d'Ingénierie des Connaissances, AFIA, Jun 2021, Bordeaux, France. pp.105-112
Conference papers emse-03260693v1
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Description sémantique des stades de développement phénologique des plantes, cas d’étude de la vigne

Catherine Roussey , Xavier Delpuech , Marc Raynal , Florence Amardeilh , Stéphan Bernard
32èmes Journées Francophones d'Ingénierie des Connaissances (IC 2021), Jun 2021, Bordeaux, France. pp.30-38
Conference papers emse-03260085v1
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FAIR or FAIRer? An integrated quantitative FAIRness assessment grid for semantic resources and ontologies

Emna Amdouni , Clement Jonquet
MTSR 2021 - 15th International Conference on Metadata and Semantics Research, Nov 2021, Madrid, Spain. pp.67-80, ⟨10.1007/978-3-030-98876-0_6⟩
Conference papers lirmm-03208544v3
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Investigating One Million XRefs in Thirthy Ontologies from the OBO World

Amir Laadhar , Elcio Abrahão , Clement Jonquet
ICBO 2020 - 11th International Conference on Biomedical Ontologies, Sep 2020, Bozen-Bolzano, Italy. pp.G.1-12
Conference papers lirmm-02945170v1
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Results of the Ontology Alignment Evaluation Initiative 2020

Mina Abd Nikooie Pour , Alsayed Algergawy , Reihaneh Amini , Daniel Faria , Irini Fundulaki
OM 2020 - 15th International Workshop on Ontology Matching, Nov 2020, Athens, Greece. pp.92-138
Conference papers hal-04312966v1
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Analysis of Term Reuse, Term Overlap and Extracted Mappings across AgroPortal Semantic Resources

Amir Laadhar , Elcio Abrahão , Clement Jonquet
EKAW 2020 - 22nd International Conference on Knowledge Engineering and Knowledge Management, Sep 2020, Bozen-Bolzano, Italy. pp.71-87, ⟨10.1007/978-3-030-61244-3_5⟩
Conference papers lirmm-02945172v1
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Semantic Description of Plant Phenological Development Stages, starting with Grapevine

Catherine Roussey , Xavier Delpuech , Florence Amardeilh , Stephan Bernard , Clement Jonquet
MTSR 2020 - 14th International Conference on Metadata and Semantics Research, Dec 2020, Madrid, Spain. pp.257-268, ⟨10.1007/978-3-030-71903-6_25⟩
Conference papers hal-02996846v1
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Recent progresses in data and knowledge integration for decision support in agri-food chains

Sophie Aubin , Pierre Bisquert , Patrice Buche , Juliette Dibie-Barthelemy , Liliana Ibanescu
IC 2019 - 30es Journées francophones d'Ingénierie des Connaissances, AFIA, Jul 2019, Toulouse, France. pp.43-59
Conference papers hal-02284538v1
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Projet VisaTM : l'interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français

Fabienne Kettani , Stéphane Schneider , Sophie Aubin , Robert Bossy , Claire François
IC 2018 - 29es Journées francophones d'Ingénierie des Connaissances, PFIA, Jul 2018, Nancy, France. pp.247-249
Conference papers hal-01839626v2
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Projet VisaTM : l’interconnexion OpenMinTeD – AgroPortal – ISTEX, un exemple de service de Text et Data Mining pour les scientifiques français

Fabienne Kettani , Stéphane Schneider , Sophie Aubin , Robert Bossy , Claire François
IC 2018 - 29es journées francophones d'Ingénierie des Connaissances, Plateforme AFIA, Jul 2018, Nancy, France
Conference papers hal-04420482v1
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PGxO: A very lite ontology to reconcile pharmacogenomic knowledge units

Pierre Monnin , Clement Jonquet , Joël Legrand , Amedeo Napoli , Adrien Coulet
Methods, tools & platforms for Personalized Medicine in the Big Data Era, Oct 2017, Palermo, Italy. ⟨10.7287/peerj.preprints.3140v1⟩
Conference papers hal-01593184v2
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French ConText: Détecter la négation, la temporalité et le sujet dans les textes cliniques Français

Amine Abdaoui , Andon Tchechmedjiev , William Digan , Sandra Bringay , Clement Jonquet
SIIM 2017 - 4ème Symposium sur l'Ingénierie de l'Information Médicale, Nov 2017, Toulouse, France
Conference papers lirmm-01656834v1
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Enrichment of French Biomedical Ontologies with UMLS Concepts and Semantic Types for Biomedical Named Entity Recognition Though Ontological Semantic Annotation

Andon Tchechmedjiev , Clement Jonquet
LOTKS: Language, Ontology, Terminology and Knowledge Structures, Sep 2017, Montpellier, France
Conference papers lirmm-01605517v2
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New Generation Metadata vocabulary for Ontology Description and Publication

Biswanath Dutta , Anne Toulet , Vincent Emonet , Clement Jonquet
11th International Conference on Metadata and Semantics Research (MTSR 2017), Nov 2017, Tallinn, Estonia. pp.173-185, ⟨10.1007/978-3-319-70863-8_17⟩
Conference papers lirmm-01605783v1
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Challenges for ontology repositories and applications to biomedicine & agronomy

Clement Jonquet
SIMBig: Symposium on Information Management and Big Data, Sep 2017, Lima, Peru. pp.25-37
Conference papers lirmm-01679500v1
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Two years later: the landscape of vocabularies and ontologies in the AgroPortal

Clement Jonquet , Anne Toulet , Vincent Emonet
International Workshop on sources and data integration in agriculture, food and environment using ontologies (IN-OVIVE 2017), Jul 2017, Montpellier, France
Conference papers lirmm-01598852v1
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ViewpointS: When Social Ranking Meets the Semantic Web

Philippe Lemoisson , Guillaume Surroca , Clement Jonquet , Stefano A. Cerri
FLAIRS: Florida Artificial Intelligence Research Society, May 2017, Marco Island, FL, United States. pp.329-334
Conference papers lirmm-01598842v1
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ICD-10 coding of death certificates with the NCBO and SIFR Annotators at CLEF eHealth 2017

Andon Tchechmedjiev , Amine Abdaoui , Vincent Emonet , Clement Jonquet
CLEF: Conference and Labs of the Evaluation Forum, Sep 2017, Dublin, Ireland
Conference papers lirmm-01605359v1
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Automatic Biomedical Term Polysemy Detection

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
LREC 2016 - 10th International Conference on Language Resources and Evaluation, May 2016, Portorož, Slovenia. pp.1684-1688
Conference papers hal-04271452v1
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Selection and Combination of Heterogeneous Mappings to Enhance Biomedical Ontology Matching

Amina Annane , Zohra Bellahsene , Faiçal Azouaou , Clement Jonquet
20th International Conference on Knowledge Engineering and Knowledge Management (EKAW 2016), Nov 2016, Bologne, Italy. pp.19-33, ⟨10.1007/978-3-319-49004-5_2⟩
Conference papers lirmm-01395883v1
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MuEVo, un vocabulaire multi-expertise (patient/médecin) dédié au cancer du sein

Solène Eholié , Mike Donald Tapi Nzali , Sandra Bringay , Clement Jonquet
IC: Ingénierie des Connaissances, Jun 2016, Montpellier, France
Conference papers hal-01379272v1
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MuEVo, a breast cancer Consumer Health Vocabulary built out of web forums

Solène Eholié , Mike Donald Tapi Nzali , Sandra Bringay , Clement Jonquet
SWAT4LS: Semantic Web Applications and Tools for Life Sciences, 2016, Amsterdam, Netherlands
Conference papers hal-01398253v1
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Reusing the NCBO BioPortal technology for agronomy to build AgroPortal

Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzalé-Yeumo
ICBO 2016 - 7th International Conference on Biomedical Ontologies, P. Jaiswal; R. Hoehndorf, Aug 2016, Corvallis, OR, United States
Conference papers hal-01398251v1
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Multilingual Mapping Reconciliation between English-French Biomedical Ontologies

Amina Annane , Vincent Emonet , Faiçal Azouaou , Clement Jonquet
WIMS: Web Intelligence, Mining and Semantics, Jun 2016, Nîmes, France. ⟨10.1145/2912845.2912847⟩
Conference papers lirmm-01395880v1
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Réconciliation d'alignements multilingues dans BioPortal

Amina Annane , Vincent Emonet , Faiçal Azouaou , Clement Jonquet
IC 2016 - 27es Journées francophones d'Ingénierie des Connaissances, Jun 2016, Montpellier, France
Conference papers lirmm-01395900v1
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Subjective and generic distance in ViewpointS: an experiment on WordNet

Guillaume Surroca , Philippe Lemoisson , Stefano A. Cerri , Clement Jonquet
WIMS: Web Intelligence, Mining and Semantics, Jun 2016, Nîmes, France. ⟨10.1145/2912845.2912870⟩
Conference papers lirmm-01397993v1
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SIFR BioPortal : Un portail ouvert et générique d’ontologies et de terminologies biomédicales françaises au service de l’annotation sémantique

Clement Jonquet , Amina Annane , Khedidja Bouarech , Vincent Emonet , Soumia Melzi
JFIM: Journées Francophones d'Informatique Médicale, Jun 2016, Genève, Suisse
Conference papers hal-01398250v1
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Modèle de métadonnées dans un portail d'ontologies

Anne Toulet , Vincent Emonet , Clement Jonquet
6èmes Journées Francophones sur les Ontologies (JFO 2016), Shared best paper award, Oct 2016, Bordeaux, France
Conference papers lirmm-01397388v1
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Prédiction de la polysémie pour un terme biomédical

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
12ième Conférence francophone en Recherche d'Information et Applications (CORIA), Mar 2015, Paris, France. pp.437-452
Conference papers lirmm-01132654v1
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Diffusion de systèmes de préférences par confrontation de points de vue, vers une simulation de la Sérendipité

Guillaume Surroca , Philippe Lemoisson , Clement Jonquet , Stefano A. Cerri
IC 2015 - 26es Journées francophones d'Ingénierie des Connaissances, INRIA, AFIA, Jul 2015, Rennes, France
Conference papers lirmm-01172223v1
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AgroPortal : a proposition for ontology-based services in the agronomic domain

Clement Jonquet , Esther Dzalé-Yeumo , Elizabeth Arnaud , Pierre Larmande
IN-OVIVE, Jun 2015, Rennes, France
Conference papers lirmm-01172232v1
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Preference Dissemination by Sharing Viewpoints: Simulating Serendipity

Guillaume Surroca , Philippe Lemoisson , Clement Jonquet , Stefano A. Cerri
IC3K: Knowledge Discovery, Knowledge Engineering and Knowledge Management, Nov 2015, Lisbon, Portugal. pp.402-409, ⟨10.5220/0005636204020409⟩
Conference papers lirmm-01223078v1
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Roadmap for a multilingual BioPortal

Clement Jonquet , Vincent Emonet , Mark A. Musen
MSW: Multilingual Semantic Web, Jun 2015, Portoroz, Slovenia
Conference papers lirmm-01172218v1
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Biomedical Terminology Extraction: A new combination of Statistical and Web Mining Approaches

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
JADT: Journées d'Analyse statistique des Données Textuelles, Jun 2014, Paris, France. pp.421-432
Conference papers lirmm-01056598v2
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Gestion du multilinguisme dans un portail d’ontologies: étude de cas pour le NCBO BioPortal

Clement Jonquet , Mark A. Musen
TOTh Workshop, Dec 2014, Bruxelles, Belgique
Conference papers lirmm-01099882v1
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Yet Another Ranking Function for Automatic Multiword Term Extraction

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
9th International Conference on Natural Language Processing (PolTAL), Sep 2014, Warsaw, Poland. pp.52-64, ⟨10.1007/978-3-319-10888-9_6⟩
Conference papers lirmm-01068556v1
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Scoring semantic annotations returned by the NCBO Annotator

Soumia Melzi , Clement Jonquet
SWAT4LS: Semantic Web Applications and Tools for Life Sciences, Dec 2014, Berlin, Germany
Conference papers lirmm-01099860v1
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Integration of Linguistic and Web Information to Improve Biomedical Terminology Extraction

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
IDEAS: International Database Engineering & Applications Symposium, Jul 2014, Porto, Portugal. pp.265-269, ⟨10.1145/2628194.2628208⟩
Conference papers lirmm-01068547v2
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Comparing BioPortal and HeTOP: towards a unique biomedical ontology portal?

Julien Grosjean , Lina F. Soualmia , Khedidja Bouarech , Clement Jonquet , Stefan J. Darmoni
IWBBIO: International Work-Conference on Bioinformatics and Biomedical Engineering, Apr 2014, Granada, Spain
Conference papers lirmm-01052583v1
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Representing NCBO Annotator results in standard RDF with the Annotation Ontology

Soumia Melzi , Clement Jonquet
7th Semantic Web Applications and Tools for Life Sciences (SWAT4LS 2014), Poster session, Dec 2014, Berlin, Germany
Conference papers lirmm-01099869v1
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Extraction automatique de termes combinant différentes informations

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
TALN: Traitement Automatique des Langues Naturelles, Jul 2014, Marseille, France. pp.407-412
Conference papers lirmm-01020051v1
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Construction et évolution de connaissances par confrontation de points de vue : prototype pour la recherche d'information scientifique

Guillaume Surroca , Philippe Lemoisson , Clement Jonquet , Stefano A. Cerri
IC: Ingénierie des Connaissances, May 2014, Clermont-Ferrand, France. pp.175-186
Conference papers lirmm-00995948v1
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REX:Innovation pédagogique via l'utilisation de tablettes numériques à Polytech Montpellier

Clement Jonquet , Christophe Fiorio , Philippe Papet , Stéphanie Belin-Mejean , Claudine Pastor
TICE: Technologies de l'Information et de la Communication pour l'Enseignement, Nov 2014, Béziers, France. pp.97-106
Conference papers lirmm-01118757v1
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An Approach to Compare Bio-Ontologies Portals

Julien Grosjean , Lina F. Soualmia , Khedidja Bouarech , Clement Jonquet , Stefan J. Darmoni
MIE: Medical Informatics European, Aug 2014, Istanbul, Turkey
Conference papers lirmm-01052549v1
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SIFR Project: The Semantic Indexing of French Biomedical Data Resources

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
SIMBig: Symposium on Information Management and Big Data, Juan Antonio Lossio-Ventura; Hugo Alatrista-Salas, Sep 2014, Cusco, Peru. pp.58-61
Conference papers lirmm-01112901v1
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Combining C-value and Keyword Extraction Methods for Biomedical Terms Extraction

Juan Antonio Lossio-Ventura , Clement Jonquet , Mathieu Roche , Maguelonne Teisseire
LBM: Languages in Biology and Medicine, Dec 2013, Tokyo, Japan
Conference papers lirmm-01019991v1
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Negotiating the Web Science Curriculum through Shared Educational Artefacts

Madalina Croitoru , Stéphane Bazan , Stefano A. Cerri , Hugh C. Davis , Raffaella Folgieri
3rd International Conference on Web Science (WebSci 2011), honorable mention award, Jun 2011, Koblenz, Germany. pp.14-17
Conference papers lirmm-00652085v1
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The NCBO Annotator: OntologyBased Annotation as a Web Service

Patricia L. Whetzel , Clement Jonquet , Cherie H. Youn , Michael Dorf , Ray Fergerson
2nd International Conference on Biomedical Ontology (ICBO 2011), Demo session, O. Bodenreider, M. E. Martone, A. Ruttenberg, Jul 2011, Buffalo, NY, United States. pp.302-303
Conference papers hal-04271625v1
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The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies

Gautam K. Parai , Clement Jonquet , Rong Xu , Mark A. Musen , Nigam H. Shah
American Medical Informatics Association Annual Symposium, AMIA'10, Nov 2010, Washington, DC, United States. pp.6
Conference papers hal-00558033v1
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Optimize First, Buy Later: Analyzing Metrics to Ramp-up Very Large Knowledge Bases

Paea Lependu , Natalya F. Noy , Clement Jonquet , Paul R. Alexander , Nigam H. Shah
9th International Semantic Web Conference (ISWC 2010), Nov 2010, Shangai, China. pp.486-501
Conference papers hal-00558036v1
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Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical

Clement Jonquet , Adrien Coulet , Nigam Shah , Mark A. Musen
21èmes Journées Francophones d'Ingénierie des Connaissances (IC 2010), Jun 2010, Nimes, France. pp.271-282
Conference papers hal-00488419v1
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NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources

Clement Jonquet , Paea Lependu , Sean M. Falconer , Adrien Coulet , Natalya F. Noy
9th International Semantic Web Conference (ISWC 2010), Semantic Web Challenge winner award, Nov 2010, Shangai, China. pp.8
Conference papers hal-00557982v1
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What Four Million Mappings Can Tell You about Two Hundred Ontologies

Amir Ghazvinian , Natasha F. Noy , Clement Jonquet , Nigam H. Shah , Mark A. Musen
8th International Semantic Web Conference (ISWC2009), Oct 2009, Washington DC, United States. pp.229-242
Conference papers hal-00489094v1
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BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse

Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Benjamin Dai , Michael Dorf
1st International Conference on Biomedical Ontology (ICBO 2009), Poster session, B. Smith, Jul 2009, Buffalo, United States. pp.197
Conference papers hal-04276312v1
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Ontology Services for Semantic Applications in Healthcare and Life Sciences

Nigam H. Shah , Natasha F. Noy , Clement Jonquet , Adrien Coulet , Patricia L. Whetzel
AMIA 2009 - American Medical Informatics Association Annual Symposium, Nov 2009, San Francisco, United States. pp.515
Conference papers hal-04276271v1
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The Open Biomedical Annotator

Clement Jonquet , Nigam Shah , Mark A. Musen
AMIA Summit on Translational Bioinformatics, Mar 2009, San Francisco, CA, United States. pp.56-60
Conference papers hal-00492024v1
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NCBO Annotator: Semantic Annotation of Biomedical Data

Clement Jonquet , Nigam H. Shah , Cherie H. Youn , Mark A. Musen , Chris Callendar
ISWC 2009 - 8th International Semantic Web Conference, Poster and Demo Session, Oct 2009, Washington, DC, United States
Conference papers hal-04276274v1
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Un service Web pour l'annotation sémantique de données biomédicales avec des ontologies

Clement Jonquet , Nigam Shah , Mark A. Musen
13èmes Journées Francophones d'Informatique Médicale, JFIM'09, Apr 2009, Nice, France, France. pp.12
Conference papers hal-00492022v1
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Prototyping a Biomedical Ontology Recommender Service

Clement Jonquet , Nigam Shah , Mark A. Musen
12th Annual Bio-Ontologies SIG Meeting, P. Lord, N. Shah, S.-A. Sansone, S. Stephens, L. Soldatova, Jun 2009, Stockholm, Sweden
Conference papers hal-04271509v1
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BioPortal: A Web Repository for Biomedical Ontologies and Data Resources

Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf , Nicholas Griffith
7th International Semantic Web Conference (ISWC 2008), Poster and demo session, Oct 2008, Karlsruhe, Germany
Conference papers hal-04276324v1
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Service-Based Integration of Grid and Multi-Agent Systems Models

Clement Jonquet , Pascal Dugénie , Stefano A. Cerri
International Workshop on Service-Oriented Computing: Agents, Semantics, and Engineering, SOCASE'08:, May 2008, Estoril, Portugal. pp.56-68, ⟨10.1007/978-3-540-79968-9_5⟩
Conference papers lirmm-00288454v1
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A System for Ontology-Based Annotation of Biomedical Data

Clement Jonquet , Mark A. Musen , Nigam Shah
International Workshop on Data Integration in The Life Sciences 2008, DILS'08, Jun 2008, Evry, France. pp.144-152
Conference papers hal-00279660v1
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The Principle of Immanence in GRID-Multiagent Integrated Systems

Pascal Dugénie , Clement Jonquet , Stefano A. Cerri
AWeSOMe'08: 4th International Workshop On Agents and Web Services Merging in Distributed Environments - OTM 2008 Workshops, Nov 2008, Monterrey, Mexico. pp.98-107, ⟨10.1007/978-3-540-88875-8_29⟩
Conference papers lirmm-00339373v1
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Agent-Grid Integration Ontology

Frédéric Duvert , Clement Jonquet , Pascal Dugénie , Stefano A. Cerri
OTM: On the Move to Meaningful Internet Systems, Oct 2006, Montpellier, France. pp.136-146, ⟨10.1007/11915034_36⟩
Conference papers lirmm-00110569v1
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The Grid Shared Desktop for CSCL

Stefano A. Cerri , Monica Crubézy , Pascal Dugénie , Clement Jonquet , Philippe Lemoisson
eChallenges 2006 Conference, Oct 2006, Barcelona, Spain, pp.1493-1499
Conference papers lirmm-00128314v1
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Intégration orientée service des modèles Grid et Multi-Agents

Clement Jonquet , Stefano A. Cerri , Pascal Dugénie
14èmes Journées Francophones sur les Systèmes Multi-Agents, JFSMA'06, Oct 2006, Annecy, France. pp.271-274
Conference papers lirmm-00107500v1
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I-Dialogue: Modelling Agent Conversation by Streams and Lazy Evaluation

Clement Jonquet , Stefano A. Cerri
International Lisp Conference, ILC'05, Jun 2005, Stanford University, United States. pp.1
Conference papers hal-00250148v1
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Les Agents comme des interpréteurs Scheme : Spécification dynamique par la communication

Clement Jonquet , Stefano A. Cerri
RFIA: Reconnaissance des Formes et Intelligence Artificielle, AFRIF-AFIA, Jan 2004, Toulouse, France. pp.779-788
Conference papers hal-00250149v1
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Agents Communicating for Dynamic Service Generation

Clement Jonquet , Stefano A. Cerri
GLS'04: 1st Workshop on GRID Learning Services at ITS'04, Aug 2004, Maceio, Brazil. pp.39-53
Conference papers lirmm-00108792v1
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Apprentissage Issu de la Communication pour des Agents Cognitifs

Clement Jonquet , Stefano A. Cerri
Journées Francophones sur les Systèmes Multi-Agents (JFSMA), 2003, Hammamet, Tunisie. pp.83-87
Conference papers lirmm-00191963v1
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Cognitive Agents Learning by Communicating

Clement Jonquet , Stefano A. Cerri
ALCAA: Agents Logiciels - Coopération - Apprentissage - Activités Humaines, Sep 2003, Bayonne, France
Conference papers lirmm-00191962v1
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Dynamic Learning Agents and Enhanced Presence on the Grid

Stefano A. Cerri , Marc Eisenstadt , Clement Jonquet
3rd International Workshop on GRID Infrastructure to Support Future Technology Enhanced Learning (LeGE-WG), Dec 2003, Berlin, Germany
Conference papers lirmm-00269487v1
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Ontology Repositories and Semantic Artefact Catalogues with the OntoPortal Technology

Clement Jonquet
Vocabulary Symposium, Nov 2023, Acton, Australia. Zenodo, 2023, ⟨10.5281/zenodo.10020455⟩
Conference poster hal-04286581v1
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FAIR-IMPACT Expanding FAIR solutions across EOSC

Sara Pittonet Gaiarin , Kevin Ashley , Clement Jonquet , Ingrid Dillo
CORDI 2023 - 1st Conference on Research Data Infrastructure, Sep 2023, Karlsruhe, Germany. 2
Conference poster hal-04313031v1

Semantic artefact and ontology services for long-term data interpretation

Clement Jonquet
PV 2023 - 10th Conference on Ensuring Long-Term Preservation and Adding Value to Scientific and Technical Data, May 2023, Geneva, Switzerland. 2023
Conference poster hal-04079485v1
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O'FAIRe: Ontology FAIRness Evaluator in the AgroPortal semantic resource repository

Emna Amdouni , Syphax Bouazzouni , Clement Jonquet
19th Extended Semantic Web Conference (ESWC 2022), Poster and demonstration, May 2022, Hersonissos, Greece. , 13384, pp.89-94, 2022, LNCS. ⟨10.1007/978-3-031-11609-4_17⟩
Conference poster lirmm-03630543v3

Minimum metadata for FAIR Semantic artefacts

Yann Le Franc , Biswanath Dutta , Clement Jonquet , Robert Pergl
SciDataCon International Data Week, Jun 2022, Seoul, South Korea. , 1079
Conference poster hal-04313036v1
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Adoption of BioPortal's Ontology Registry Software: The Emerging OntoPortal Community

John Graybeal , Clement Jonquet , Nicola Fiore , Mark A. Musen
RDA P13 - 13th Research Data Alliance Plenary Meeting, Apr 2019, Philadelphia, United States.
Conference poster lirmm-02360625v1
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D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity

Sophie Aubin , Anne-Francoise Adam-Blondon , Michael Alaux , Mouhamadou Ba , Stéphan Bernard
14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩
Conference poster lirmm-02351000v1
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Maitriser une technologie de gestion des ontologies et vocabulaires en France : défis et enjeux

Clement Jonquet
SemWeb.Pro, Nov 2018, Paris, France
Conference poster lirmm-01852073v2
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The Agronomic Linked Data (AgroLD) project

Clement Jonquet
11th Conference on Information Technology in Agriculture, Food and the Environment (EFITA 2017), Poster session, Jul 2017, Montpellier, France. , 2017
Conference poster lirmm-01598856v1
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AgroPortal: an ontology repository for agronomy

Clement Jonquet
11th Conference on Information Technology in Agriculture, Food and the Environment (EFITA 2017), Poster session, Jul 2017, Montpellier, France. , 2017
Conference poster lirmm-01598854v2
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AgroPortal : A Proposition for Ontology-Based Services in the Agronomic Domain

Clement Jonquet , Esther Dzalé-Yeumo , Elizabeth Arnaud , Pierre Larmande , Anne Toulet
XXIV International Plant & Animal Genome Conference (PAG 2016), Poster session, Jan 2016, San Diego, United States. , P0343, 2016, Systems Biology and Ontologies, Poster session
Conference poster lirmm-01397465v1
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AgroPortal: an open repository of ontologies and vocabularies for agriculture and nutrition data

Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzalé Yeumo
Ben Schaap. GODAN Summit, Sep 2016, New York, NY, United States. , 2016
Conference poster hal-01398252v1