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Julie Coloigner

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Contact ======= **E-Mail**: julie.coloigner@irisa.fr **Address**: IRISA / INRIA Rennes Campus Universitaire de Beaulieu 35042 Rennes cedex – France **Tel**: +33 2 99 84 22 13 Research interests ================== - Neuroimagery (fMRI and diffusion) - Graph Theory - Optimization - Sparsity Research experiences ==================== - **Since Nov. 2018: CNRS Researcher within Empenn team,** IRISA UMR 6074, Rennes, France. - Connectome-based predictive modeling - Keywords: Graph theory, functional and structural connectivity - **Apr. 2017- Oct 2018: Post-doctorat in*“Diffusion analysis in depression”*,** Univ Rennes, Inria, CNRS, Inserm, IRISA UMR 6074, VISAGES ERL U-1228, F-35000 Rennes, France. - Supervisors: Dr. Christian Barillot. - Keywords: Graph theory, functional and structural connectivity - **Apr. 2014- Apr. 2017: Post-doctorat scientist**, ***“Analysis of resting-state fMRI in sickle cell disease”***, Children’s Hospital of Los Angeles, University of Southern California, National Heart Lung and Blood Institute U01HL117718. - Supervisors: Dr. John WOOD and Dr. Natasha LEPORE. - Keywords: functional connectivity, functional magnetic resonance imaging (resting state), Graph theory, and statistical analysis (sparse modeling, learning method). - **Jan. 2013-Oct. 2013: Post-doctorat scientist in** ***“Methods of source localization for electroencephalography and magnetoencephalography”,*** INSERM (French National Institute for Health and Medical Research), LTSI (Signal and Image Processing Laboratory), University of Rennes 1, France, , French National Institute. - Supervisors: Dr. Laurent ALBERA, Dr. Isabelle MERLET and Pr. Fabrice WENDLING. - Keywords: source localization, inverse problem, sparcity and electroencephalography. - **2009-2012: PhD in Signal Processing, *“Line search and trust region strategies for canonical decomposition of seminonnegative semi-symmetric tensors”,*** INSERM, Laboratoire Traitement du Signal et de l’Image (LTSI), Univ Rennes, Inria, CNRS, Inserm, IRISA UMR 6074, VISAGES ERL U-1228, F-35000 Rennes, France. - Jury: Pr. Jean-Christophe Pesquet, Centrale Supelec, Paris, France, Pr. Eric Moreau, University of Toulon, CNRS, France, Pr. Christian Jutten, GIPSA-Lab, CNRS and Univ. Grenoble Alpes, France and Dr. Pierre Comon, GIPSA-Lab, CNRS and Univ. Grenoble Alpes, France. - Supervisors: Dr. Laurent Albera and Pr. Lotfi Senhadji. - Keywords: numerical analysis (tensor and matrix decompositions), signal processing (independent component analysis and blind source separation), statistical analysis and data mining (reduction of dimension, compression, machine learning, classification). Education ========= - **2007-2008: Master’s degree** in mathematics, in particular numerical analysis-oriented, Univ Rennes 1. - **2008-2009: Postgraduate degree** in Modelization and Scientific Calculus, University of Rennes 1, France, Fellowship: “Large deformation theory” , EDF CLAMART, France. Teaching experiment =================== - **2014-2017: Co-supervising students** in PhD and Master’s degree. • Yaqiong Chai (2014-2017) : « An experimental investigation of labeling efficiency for pseudo-continuous arterial spin labeling.” • Yeun Kim (2014-2015, 1 year) : « Contrasting resting-state fMRI abnormamities from sickle and non-sickle anemia.” • Chau Vu (2015-2016, 1 year) : « Regional changes in cerebral perfusion in response to hypoxic challenge in anemic patients. » • Shayan Farzad (2015-2017, 2 years) : « Quantification de la tortuosité vasculaire chez les patients anémiques » • Jacob Antony (2016, 6 months) : « Analysis of fiber density in sickle cell disease.» • Hanzhuo Tan (2016, 6 months) : «The effects of inattention and hyperactivity-impulsivity symptoms on functional connectivity in adolescents. » • Daniela Sacchetto (2016, 3 months) : « Development of preprocessing pipeline for diffusion MRI.» - **2009-2013:** **Mathematics teacher** (192 hours), Class : Mathematics and Signal processing. Skills ====== - Mathematics: numerical analysis and optimization. - Signal processing: independent component analysis, blind source separation, localisation de sources and functional connectivity. - Biomedical applications: spectroscopy, radiation therapy, EEG, fMRI. - Langages: C, C++, Python, Matlab, LateX and Mathematica. - Softwares: FSL, AFNI, Paraview and Slicer. Other activities ================ - Co-organisation of **[Brainhack Rennes 2018](https://brainhack.irisa.fr/)** (April 2018, Rennes, France), an open science hackathon part of Brainhack global. - Reviewer for Signal processing (Elsevier), **[International Symposium on Medical Information](http://www.sipaim.org/)** Processing and Analysis (SIPAIM, 2015, 2016 and 2018) and [IEEE International Symposium on Biomedical Imaging (ISBI).](http://biomedicalimaging.org/2018/)

Publications

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Structural Brain Connectivity and Treatment Improvement in Mood Disorder

Sébastien Dam , Jean-Marie Batail , Gabriel Robert , Dominique Drapier , Pierre Maurel
Brain connectivity, inPress, pp.1-31
Journal articles inserm-04515217v1
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Connectivity patterns of the core resting-state networks associated with apathy in late-life depression

Jean-Charles Roy , Thomas Desmidt , Sébastien Dam , Iris Mirea-Grivel , Louise Weyl
Journal of Psychiatry and Neuroscience, 2023, 48 (6), pp.E404 - E413. ⟨10.1503/jpn.230008⟩
Journal articles hal-04295208v1
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Brain BOLD and NIRS response to hyperoxic challenge in sickle cell disease and chronic anemias

Chau Vu , Adam Bush , Matthew Borzage , Soyoung Choi , Julie Coloigner
Magnetic Resonance Imaging, 2023, 100, pp.26-35. ⟨10.1016/j.mri.2023.03.002⟩
Journal articles hal-04284976v1
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Quantitative perfusion mapping with induced transient hypoxia using BOLD MRI

Chau Vu , Yaqiong Chai , Julie Coloigner , Aart J Nederveen , Matthew Borzage
Magnetic Resonance in Medicine, 2021, 85 (1), pp.168-181. ⟨10.1002/mrm.28422⟩
Journal articles inserm-02913689v1
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Tract‐specific analysis and neurocognitive functioning in sickle cell patients without history of overt stroke

Yaqiong Chai , Chaoran Ji , Julie Coloigner , Soyoung Choi , Melissa Balderrama
Brain and Behavior, 2021, 11 (3), ⟨10.1002/brb3.1978⟩
Journal articles hal-04513348v1
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The impact of Neurofeedback on effective connectivity networks in chronic stroke patients: an exploratory study

Giulia Lioi , Adolfo Veliz , Julie Coloigner , Quentin Duché , Simon Butet
Journal of Neural Engineering, 2021, 18 (5), pp.056052. ⟨10.1088/1741-2552/ac291e⟩
Journal articles hal-03354296v1
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Transient Hypoxia Model Revealed Cerebrovascular Impairment in Anemia Using BOLD MRI and Near‐Infrared Spectroscopy

Julie Coloigner , Chau Vu , Matthew Borzage , Adam Bush , Soyoung Choi
Journal of Magnetic Resonance Imaging, 2020, 52 (5), pp.1400-1412. ⟨10.1002/jmri.27210⟩
Journal articles inserm-02913695v1
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Structural abnormalities associated with poor outcome of a major depressive episode: the role of thalamus.

Jean-Marie Batail , Julie Coloigner , Marine Soulas , Gabriel Robert , Christian Barillot
Psychiatry Research: Neuroimaging, 2020, 305, pp.1-10. ⟨10.1016/j.pscychresns.2020.111158⟩
Journal articles hal-02920551v1
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White matter has impaired resting oxygen delivery in sickle cell patients

Yaqiong Chai , Adam Bush , Julie Coloigner , Aart Nederveen , Benita Tamrazi
American Journal of Hematology, 2019, 94 (4), pp.467-474. ⟨10.1002/ajh.25423⟩
Journal articles inserm-02174474v1
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Patients with sickle-cell disease exhibit greater functional connectivity and centrality in the locus coeruleus compared to anemic controls

Ravi Bhatt , Lonnie Zeltzer , Julie Coloigner , John Wood , Tom Coates
Neuroimage-Clinical, 2019, 21, pp.101686. ⟨10.1016/j.nicl.2019.101686⟩
Journal articles inserm-02174466v1
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White matter abnormalities in depression: a categorical and phenotypic diffusion MRI study.

Julie Coloigner , Jean-Marie Batail , Olivier Commowick , Isabelle Corouge , Gabriel Robert
Neuroimage-Clinical, 2019, 22, pp.101710. ⟨10.1016/j.nicl.2019.101710⟩
Journal articles inserm-01938407v1
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Contrasting resting-state fMRI abnormalities from sickle and non-sickle anemia

Julie Coloigner , Yeun Kim , Adam Bush , Soyoung Choi , Melissa Balderrama
PLoS ONE, 2017, 12 (10), pp.e0184860. ⟨10.1371/journal.pone.0184860⟩
Journal articles hal-01710679v1

Graph Lasso-based test for evaluating functional brain connectivity in sickle cell disease

Julie Coloigner , Ronald Phlypo , Thomas D. Coates , Nastasha Lepore , John C Wood
Brain connectivity, 2017, 7 (7), ⟨10.1089/brain.2016.0474⟩
Journal articles hal-01658272v1
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A novel classification method for prediction of rectal bleeding in prostate cancer radiotherapy based on a semi-nonnegative ICA of 3D planned dose distributions

Julie Coloigner , Aureline Fargeas , Amar Kachenoura , Lu Wang , Gael Dréan
IEEE Journal of Biomedical and Health Informatics, 2015, 9 (3), pp.1168-1177. ⟨10.1109/JBHI.2014.2328315⟩
Journal articles hal-01011843v1

On feature extraction and classification in prostate cancer radiotherapy using tensor decompositions.

Auréline Fargeas , Laurent Albera , Amar Kachenoura , Gaël Dréan , Juan-David Ospina
Medical Engineering & Physics, 2015, 37 (1), pp.126-31. ⟨10.1016/j.medengphy.2014.08.009⟩
Journal articles inserm-01119187v1
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Semi-nonnegative joint diagonalization by congruence and semi-nonnegative ICA

Julie Coloigner , Laurent Albera , Amar Kachenoura , Fanny Noury , Lotfi Senhadji
Signal Processing, 2014, 105, pp.185-197. ⟨10.1016/j.sigpro.2014.05.017⟩
Journal articles inserm-01006599v1
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Line search and trust region strategies for canonical decomposition of semi-nonnegative semi-symmetric 3rd order tensors

Julie Coloigner , Ahmad Karfoul , Laurent Albera , Pierre Comon
Linear Algebra and its Applications, 2014, 450, pp.334-374. ⟨10.1016/j.laa.2014.02.001⟩
Journal articles hal-00945606v1
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Imaging biomarker discovery in major depressive disorder with diffusion MRI multi-compartment models

Renaud Hedouin , Olivier Commowick , Julie Coloigner
OHBM 2022 - 28th Annual Meeting of the Organization for Human Brain Mapping, Jun 2022, Glasgow, United Kingdom
Conference papers inserm-03934869v1
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Shape-based features of white matter fiber-tracts associated with outcome in Major Depression Disorder

Claire Cury , Jean-Marie Batail , Julie Coloigner
MICCAI 2022 - International Conference on Medical Image Computing and Computer-Assisted Intervention, Sep 2022, Singapour, Singapore. pp.163-173, ⟨10.1007/978-3-031-16431-6_16⟩
Conference papers hal-03798593v1
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A convolutional Wasserstein distance for tractography evaluation : complementary study to state-of-the-art measures

Thomas Durantel , Julie Coloigner , Olivier Commowick
ISBI 2022 - IEEE International Symposium on Biomedical Imaging, Mar 2022, Calcutta, India. ⟨10.1109/ISBI52829.2022.9761650⟩
Conference papers hal-03630777v1
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Structural and functional interplay in anxiety related classification: a graph signal processing approach

Giovanna Orrù , Pierre Maurel , Julie Coloigner
ISBI 2021 - IEEE International Symposium on Biomedical Imaging, Apr 2021, Nice, France. pp.1-4
Conference papers hal-03450470v1
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Hyperoxia Challenge in Healthy and Anemic Subjects using BOLD MRI

Chau Vu , Julie Coloigner , John Wood
ISMRM, May 2019, Montreal, France
Conference papers inserm-02159373v1
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Effect of prenatal organic solvent exposure on structural connectivity at childhood

Julie Coloigner , Anne-Claire Binter , Elise Bannier , Jean-Christophe Ferré , Cécile Chevrier
ISBI 2019 - 16th IEEE International Symposium on Biomedical Imaging, Apr 2019, Venise, Italy. pp.151-154, ⟨10.1109/ISBI.2019.8759473⟩
Conference papers inserm-02176376v1

Structural connectivity analysis in treatment-resistant depression

Julie Coloigner , Jean-Marie Batail , Dominique Drapier , Christian Barillot
OHBM 2019 - 25th Annual Meeting of the Organization for Human Brain Mapping, Jun 2019, Rome, Italy. pp.1-2
Conference papers hal-02176403v1
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Diffusion MRI as an imaging marker of depression from a large and homogenous population study

Julie Coloigner , Jean-Marie Batail , Isabelle Corouge , Jean-Christophe Ferré , Dominique Drapier
ISMRM 2018 - International Society for Magnetic Resonance in Medicine, Jun 2018, Paris, France. pp.1-2
Conference papers hal-01812093v1
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Diffusion MRI as a descriptive imaging marker of the pathogenesis of treatment-resistant depression

Julie Coloigner , Jean-Marie Batail , Isabelle Corouge , Jean-Christophe Ferré , Dominique Drapier
ISMRM 2018 - International Society for Magnetic Resonance in Medicine, Jun 2018, Paris, France. pp.1-2
Conference papers hal-01812087v1
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Parametric Mapping of Oxygen Activity in Human Placenta across Gestation using in utero BOLD imaging

Vidya Rajagopalan , Vince Schmithorst , Julie Coloigner , Jessica Winowski , Matthew Borzage
25th annual meeting of the international society of magnetic resonance in medecine, 2017, Honolulu, United States
Conference papers hal-01792319v1
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Fiber connection density based on in sickle cell disease

Julie Coloigner , Jacob Anthony , Rosa Vlosova , Adam Bush , Soyoung Choi
25th annual meeting of the international society of magnetic resonance in medecine, 2017, Honolulu, Hawaii, United States
Conference papers hal-01792310v1
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Functional connectivity analysis for thalassemia disease based on a graphical lasso model

Julie Coloigner , Ronald Phlypo , Adam Bush , Natasha Lepore , John Wood
ISBI 2016 - IEEE International Symposium on Biomedical Imaging, Apr 2016, Prague, Czech Republic. pp.1295 - 1298, ⟨10.1109/ISBI.2016.7493504⟩
Conference papers hal-01355161v1
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BOLD delay times using group delay in sickle cell disease

Julie Coloigner , Chau Vu , Adam Bush , Matt Borzage , Vidya Rajagopalan
SPIE Medical Imaging, Feb 2016, San Diego, United States. ⟨10.1117/12.2217263⟩
Conference papers hal-01710721v1

An experimental investigation of labeling efficiency for pseudo-continuous arterial spin labeling

Yaqiong Chai , Adam Bush , Julie Coloigner , Xiaoping Qu , Jonathan Chia
2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI 2016), Apr 2016, Prague, France. ⟨10.1109/ISBI.2016.7493458⟩
Conference papers hal-01710699v1
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The 3D EdgeRunner Pipeline: a novel shape-based analysis for neoplasms characterization

Fernando Yepes-C , Rebecca Johnson , Yi Lao , Darryl Hwang , Julie Coloigner
SPIE Medical Imaging 2016, Feb 2016, San Diego, CA, United States. ⟨10.1117/12.2217238⟩
Conference papers hal-01710708v1

DTI analysis in patients with sickle cell disease

Julie Coloigner , Daniela Sacchetto , Jeff Tanedo , Maxime Descoteaux , Thomas D. Coates
46th Society For Neuroscience conference, 2016, San Diego, United States
Conference papers hal-01792302v1
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Low-frequency fluctuation amplitude analysis of resting-state fMRI for sickle cell disease patients

Julie Coloigner , Yeun Kim , Adam Bush , Matt Borzage , Vidya Rajagopalan
11th International Symposium on Medical Information Processing and Analysis, 2015, Cuenca-Ecuador, Ecuador
Conference papers hal-01792258v1
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Analysis of Hemodynamic Changes and Bold Signals of Sickle Cell Disease Patients during Desaturation

Julie Coloigner , Chau Vu , Matt Borzage , Adam Bush , Natasha Lepore
57th American Society of Hematology (ASH) conference, 2015, Orlando, United States
Conference papers hal-01792249v1

Tract specific analysis in patients with sickle cell disease

Yaqiong Chai , Julie Coloigner , Xiaoping Qu , Soyoung Choi , Adam Bush
11th International Symposium on Medical Information Processing and Analysis (SIPAIM 2015), Nov 2015, Cuenca, France. ⟨10.1117/12.2213617⟩
Conference papers hal-01710727v1

Canonical decomposition of semi-symmetric semi-nonnegative three-way arrays .

Julie Coloigner , Laurent Albera , Amar Kachenoura , Lotfi Senhadji
Signals, Systems and Computers (ASILOMAR), Nov 2011, Pacific Grove, CA, United States. pp.444 - 448, ⟨10.1109/ACSSC.2011.6190038⟩
Conference papers hal-00908655v1
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Décomposition de tableaux d'ordre trois semi-nonnégatifs et semi-symétriques

Julie Coloigner , Laurent Albera , Ahmad Karfoul , Pierre Comon
GRETSI 11, Vingt-troisième colloque sur le Traitement du Signal et des Images, Sep 2011, Bordeaux, France. pp.4
Conference papers hal-00659973v1

Semi-nonnegative Independent Component Analysis: The (3,4)-SENICAexp Method.

Julie Coloigner , Laurent Albera , Ahmad Karfoul , Amar Kachenoura , Pierre Comon
Proceedings of the 9th International Conference Latent Variable Analysis and Signal Separation LVA/ICA 2010, Sep 2010, St. Malo, France. pp.612-619, ⟨10.1007/978-3-642-15995-4_76⟩
Conference papers hal-00910705v1
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Imaging biomarker discovery in major depressive disorder with diffusion MRI multi-compartment models

Renaud Hedouin , Olivier Commowick , Gabriel Robert , Julie Coloigner
OHBM 2022 - 28th Annual Meeting of the Organization of Human Brain Mapping, Jun 2022, Glasgow, United Kingdom. pp.1-1
Conference poster inserm-03934921v1

The effect of neurofeedback training on effective connectivity assessed with dynamic causal modeling in stroke patients – a pilot study

Giulia Lioi , Adolfo Veliz , Julie Coloigner , Quentin Duché , Simon Butet
WFNR 2020 - World Federation For NeuroRehabilitation, Oct 2020, Lyon, France
Conference poster hal-03354319v1
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White matter connectivity analysis in patients suffering from depression.

Julie Coloigner , Jean-Marie Batail , Isabelle Corouge , Dominique Drapier , Christian Barillot
2018 - 7ème Forum de l’Institut de Psychiatrie, Sep 2018, Amiens, France. pp.1
Conference poster hal-01890087v1
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Diffuse T1-MRI White Matter Volume Decrease in Patients with Sickle Cell Disease

Soyoung Choi , Adam Bush , Matt Borzage , Anand Joshi , Vidya Rajagopalan
21sy Annual meeting of the Organization for Human Brain Mapping, Apr 2015, Honolulu, HI, United States.
Conference poster hal-01792279v1