Julien Mozziconacci

40
Documents

Publications

Publications

Deposit thumbnail

Spatial reconstruction from contact networks: A unified approach for dynamics and genomics

Annick Lesne , Julien Mozziconnacci , Sofiane Ramdani

Y. Hirata, M. Shiro, M. Fukino, C. L. Webber Jr, K. Aihara and N. Marwan. Recurrence Plots and Their Quantifications: Methodological Breakthroughs and Interdisciplinary Discoveries, pp.131-146, 2025, Springer Proceedings in Complexity

Chapitre d'ouvrage hal-04636019v1
Deposit thumbnail

Sequence-dependent activity and compartmentalization of foreign DNA in a eukaryotic nucleus

Léa Meneu , Christophe Chapard , Jacques Serizay , Alex Westbrook , Etienne Routhier et al.

Science, 2025, 387 (6734), pp.eadm9466. ⟨10.1126/science.adm9466⟩

Article dans une revue hal-04937691v1
Deposit thumbnail

The 3D organization of chromatin colors in mammalian nuclei

Leopold Carron , Jean-Baptiste Morlot , Annick Lesne , Julien Mozziconacci

Methods in Molecular Biology, 2022, 2301, pp. 317-336. ⟨10.1007/978-1-0716-1390-0_17⟩

Article dans une revue hal-03172656v1
Deposit thumbnail

Karyotype engineering reveals spatio-temporal control of replication firing and gene contacts

Luciana Lazar-Stefanita , Jingchuan Luo , Remi Montagne , Agnes Thierry , Xiaoji Sun et al.

Cell Genomics, 2022, 2 (8), pp.100163. ⟨10.1016/j.xgen.2022.100163⟩

Article dans une revue hal-03930009v1
Deposit thumbnail

Nucleosome positioning on large tandem DNA repeats of the ’601’ sequence engineered in Saccharomyces cerevisiae

Astrid Lancrey , Alexandra Joubert , Evelyne Duvernois-Berthet , Etienne Routhier , Saurabh Raj et al.

Journal of Molecular Biology, 2022, 434 (7), pp.167497. ⟨10.1016/j.jmb.2022.167497⟩

Article dans une revue hal-03343705v2
Deposit thumbnail

Genomics enters the deep learning era

Etienne Routhier , Julien Mozziconacci

PeerJ, 2022, 10, pp.e13613. ⟨10.7717/peerj.13613⟩

Article dans une revue hal-03930029v1
Deposit thumbnail

Genome-wide prediction of DNA mutation effect on nucleosome positions for yeast synthetic genomics

Etienne Routhier , Edgard Pierre , Ghazaleh Khodabandelou , Julien Mozziconacci

Genome Research, 2021, 31 (2), pp.317-326. ⟨10.1101/gr.264416.120⟩

Article dans une revue hal-03158738v1
Deposit thumbnail

MNHN-Tree-Tools: A toolbox for tree inference using multi-scale clustering of a set of sequences

Thomas Haschka , Loic Ponger , Christophe Escude , Julien Mozziconacci

Bioinformatics, 2021, ⟨10.1093/bioinformatics/btab430⟩

Article dans une revue hal-03451406v1
Deposit thumbnail

Improving distance measures between genomic tracks with mutual proximity

Thomas Haschka , Jean Baptiste Morlot , Leopold Carron , Julien Mozziconacci

Briefings in Bioinformatics, 2021, ⟨10.1093/bib/bbab266⟩

Article dans une revue hal-03335513v1
Deposit thumbnail

The 3D genome shapes the regulatory code of developmental genes

Julien Mozziconacci , Mélody Merle , Annick Lesne

Journal of Molecular Biology, 2020, 432 (3), pp.712-723. ⟨10.1016/j.jmb.2019.10.017⟩

Article dans une revue hal-02357466v2
Deposit thumbnail

Distributed under Creative Commons CC-BY 4.0 Genome annotation across species using deep convolutional neural networks

Ghazaleh Khodabandelou , Etienne Routhier , Julien Mozziconacci

PeerJ Computer Science, 2020, 6, pp.e278. ⟨10.7717/peerj-cs.278⟩

Article dans une revue hal-02883334v1

Chromosomes : étonnants polymères !

Maria Barbi , Annick Lesne , Julien Mozziconacci , Jean-Marc Victor

Reflets de la Physique, 2018, 57, pp.10-15. ⟨10.1051/refdp/201857010⟩

Article dans une revue hal-03518411v1
Deposit thumbnail

Kinetic Signature of Cooperativity in the Irreversible Collapse of a Polymer

Vittore F Scolari , Guillaume Mercy , Romain Koszul , Annick Lesne , Julien Mozziconacci

Physical Review Letters, 2018, 121 (5), pp.057801. ⟨10.1103/PhysRevLett.121.057801⟩

Article dans une revue hal-01992814v1
Deposit thumbnail

Characterizing meiotic chromosomes' structure and pairing using a designer sequence optimized for Hi‐C

Héloise Muller , Vittore F Scolari , Nicolas Agier , Aurele Piazza , Agnès Thierry et al.

Molecular Systems Biology, 2018, 14 (7), pp.e8293. ⟨10.15252/msb.20188293⟩

Article dans une revue hal-01890095v1
Deposit thumbnail

High-salt Recovered Sequences are associated with the active chromosomal compartment and with large ribonucleoprotein complexes including nuclear bodies

Marie Baudement , Axel Cournac , Franck Court , Marie Seveno , Hugues Parrinello et al.

Genome Research, 2018, 28 (11), pp.1733 - 1746. ⟨10.1101/gr.237073.118⟩

Article dans une revue hal-01912447v1

P-Body Purification Reveals the Condensation of Repressed mRNA Regulons

Arnaud Hubstenberger , Maïté Courel , Marianne Bénard , Sylvie Souquère , Michèle M. Ernoult-Lange et al.

Molecular Cell, 2017, 68 (1), pp.144-157.e5. ⟨10.1016/j.molcel.2017.09.003⟩

Article dans une revue hal-02153054v1
Deposit thumbnail

Cohesins and condensins orchestrate the 4D dynamics of yeast chromosomes during the cell cycle

Luciana Lazar-Stefanita , Vittore F Scolari , Guillaume Mercy , Héloïse Muller , Thomas M M Guérin et al.

EMBO Journal, 2017, 36 (18), pp.2684 - 2697. ⟨10.15252/embj.201797342⟩

Article dans une revue hal-01596511v1

The physics of epigenetics

Ruggero Cortini , Maria Barbi , Bertrand Caré , Christophe Lavelle , Annick Lesne et al.

Reviews of Modern Physics, 2016, 88 (2), ⟨10.1103/RevModPhys.88.025002⟩

Article dans une revue hal-03510200v1
Deposit thumbnail

The 3D folding of metazoan genomes correlates with the association of similar repetitive elements

Axel Cournac , Romain Koszul , Julien Mozziconacci

Nucleic Acids Research, 2016, 44 (1), pp.245-255. ⟨10.1093/nar/gkv1292⟩

Article dans une revue hal-01294687v1
Deposit thumbnail

Network concepts for analyzing 3D genome structure from chromosomal contact maps

Jean-Baptiste Morlot , Julien Mozziconacci , Annick Lesne

EPJ Nonlinear Biomedical Physics, 2016, 4 (1), ⟨10.1140/epjnbp/s40366-016-0029-5⟩

Article dans une revue hal-03199686v1
Deposit thumbnail

Principles of chromatin organization in yeast: relevance of polymer models to describe nuclear organization and dynamics

Renjie Wang , Julien Mozziconacci , Aurélien Bancaud , Olivier Gadal

Current Opinion in Cell Biology, 2015, 34, pp.54 - 60. ⟨10.1016/j.ceb.2015.04.004⟩

Article dans une revue hal-01682615v1
Deposit thumbnail

Filling the gap: Micro-C accesses the nucleosomal fiber at 100-1000 bp resolution.

Julien Mozziconacci , Romain Koszul

Genome Biology, 2015, 16 (1), pp.169. ⟨10.1186/s13059-015-0744-8⟩

Article dans une revue pasteur-01420328v1

DNA topology in chromosomes: a quantitative survey and its physiological implications

Maria Barbi , Julien Mozziconacci , Hua Wong , Jean-Marc Victor

Journal of Mathematical Biology, 2014, 68 (1-2), pp.145-179. ⟨10.1007/s00285-012-0621-y⟩

Article dans une revue hal-03510117v1
Deposit thumbnail

3D genome reconstruction from chromosomal contacts

Annick Lesne , Julien Riposo , Paul Roger , Axel Cournac , Julien Mozziconacci

Nature Methods, 2014, 11, pp.1141-1143. ⟨10.1038/NMETH.3104⟩

Article dans une revue hal-02324120v1
Deposit thumbnail

Systematic characterization of the conformation and dynamics of budding yeast chromosome XII

Benjamin Albert , Julien Mathon , Ashutosh Shukla , Hicham Saad , Christophe Normand et al.

Journal of Cell Biology, 2013, 202 (2), pp.201-210. ⟨10.1083/jcb.201208186⟩

Article dans une revue hal-01682609v2

Electrostatics of DNA compaction in viruses, bacteria and eukaryotes: functional insights and evolutionary perspective

Pascal Carrivain , Axel Cournac , Christophe Lavelle , Annick Lesne , Julien Mozziconacci et al.

Soft Matter, 2012, 8 (36), pp.9285. ⟨10.1039/C2SM25789K⟩

Article dans une revue hal-03510086v1

Pulling chromatin apart: Unstacking or Unwrapping?

Jean-Marc Victor , Jordanka Zlatanova , Maria Barbi , Julien Mozziconacci

BMC Biophysics, 2012, 5 (1), ⟨10.1186/2046-1682-5-21⟩

Article dans une revue hal-03510102v1
Deposit thumbnail

Normalization of a chromosomal contact map

Axel Cournac , Hervé Marie-Nelly , Martial Marbouty , Romain Koszul , Julien Mozziconacci

BMC Genomics, 2012, 13 (1), pp.436. ⟨10.1186/1471-2164-13-436⟩

Article dans une revue pasteur-00769663v1

On the topology of chromatin fibres

Maria Barbi , Julien Mozziconacci , Jean-Marc Victor , Hua Wong , Christophe Lavelle

Interface Focus, 2012, 2 (5), pp.546-554. ⟨10.1098/rsfs.2011.0101⟩

Article dans une revue hal-03510056v1

A physical model for the condensation and decondensation of eukaryotic chromosomes

Julien Mozziconacci , Christophe Lavelle , Maria Barbi , Annick Lesne , Jean-Marc Victor

FEBS Letters, 2006, 580 (2), pp.368-372. ⟨10.1016/j.febslet.2005.12.053⟩

Article dans une revue hal-03509975v1

Nucleosome gaping supports a functional structure for the 30nm chromatin fiber

Julien Mozziconacci , Jean-Marc Victor

Journal of Structural Biology, 2003, 143 (1), pp.72-76. ⟨10.1016/s1047-8477(03)00102-3⟩

Article dans une revue hal-03762461v1