Juliette Cooke
Publications
Publications
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Simulated metabolic profiles reveal biases in pathway analysis methodsMetabolomics, 2025, 21 (5), pp.136. ⟨10.1007/s11306-025-02335-y⟩ |
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Genome scale metabolic network modelling for metabolic profile predictionsPLoS Computational Biology, 2024, 20 (2), pp.e1011381. ⟨10.1371/journal.pcbi.1011381⟩ |
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PathIntegrate: Multivariate modelling approaches for pathway-based multi-omics data integrationPLoS Computational Biology, 2024, 20 (3), pp.e1011814. ⟨10.1371/journal.pcbi.1011814⟩ |
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Avoiding the Misuse of Pathway Analysis Tools in Environmental MetabolomicsEnvironmental Science and Technology, In press, ⟨10.1021/acs.est.2c05588⟩ |
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Pathway analysis in metabolomics: Recommendations for the use of over-representation analysisPLoS Computational Biology, 2021, 17 (9), ⟨10.1371/journal.pcbi.1009105⟩ |
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Multi-omics data integration in constraint-based modeling of metabolic networks to study the metabolism of adipose-derived stem cellsJOBIM 2025, Jul 2025, Bordeaux & Online, France. |
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In silico prediction of metabolic profiles for improved biomarker discovery and metabolic phenotypingBioinformatics [q-bio.QM]. Institut National Polytechnique de Toulouse - INPT, 2023. English. ⟨NNT : 2023INPT0137⟩ |
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SAMBA, a recommendation system for biomarker discovery using metabolic networks8th Conference on Constraint-Based reconstruction and Analysis (COBRA 2022), Sep 2022, Galway, Ireland |
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Pathway analysis in metabolomics: pitfalls and best practice for the use of over-representation analysis2021 |