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Evolution of population structure in a commercial European hybrid dent maize breeding program and consequences on genetic diversity
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Using phenomic selection to predict hybrid values with NIR spectra measured on the parental lines: proof of concept on maize
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Genomic prediction-aided incorporation of genetic resources into elite breeding: lessons from a collaborative multiparental design in flint maize
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Improvement in genomic prediction of maize with prior gene ontology information depends on traits and environmental conditions
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Portability of genomic predictions trained on sparse factorial designs across two maize silage breeding cycles
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High-dimensional multi-omics measured in controlled conditions are useful for maize platform and field trait predictions
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Assessing the potential of genetic resource introduction into elite germplasm: a collaborative multiparental population for flint maize
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Detecting directional and non-directional epistasis in bi-parental populations using genomic data
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Identifying QTLs involved in hybrid performance and heterotic group complementarity: new GWAS models applied to factorial and admixed diallel maize hybrid panels
Aurélien Beugnot
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Improving the use of plant genetic resources to sustain breeding programs’ efficiency
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Genomic prediction for grain yield and micro-environmental sensitivity in winter wheat
Miguel Raffo
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Robotized indoor phenotyping allows genomic prediction of adaptive traits in the field
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Improving genomic predictions with inbreeding and nonadditive effects in two admixed maize hybrid populations in single and multienvironment contexts
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Genetic Architecture of Powdery Mildew Resistance Revealed by a Genome-Wide Association Study of a Worldwide Collection of Flax (Linum usitatissimum L.)
Adrien Speck
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Genomic prediction of hybrid performance: comparison of the efficiency of factorial and tester designs used as training sets in a multiparental connected reciprocal design for maize silage
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Unravelling cucumber resistance to several viruses via genome-wide association studies highlighted resistance hotspots and new QTLs
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Genomic Prediction of Hybrid Crops Allows Disentangling Dominance and Epistasis
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Deciphering the Genetic Architecture of Plant Virus Resistance by GWAS, State of the Art and Potential Advances
Severine Monnot
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Revisiting hybrid breeding designs using genomic predictions: simulations highlight the superiority of incomplete factorials between segregating families over topcross designs
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Quantitative Trait Loci involved in the reproductive success of a parasitoid wasp
Romain Benoist
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Genomic prediction with a maize collaborative panel: identification of genetic resources to enrich elite breeding programs
Antoine Allier
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Optimized breeding strategies to harness genetic resources with different performance levels
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Disentangling group specific QTL allele effects from genetic background epistasis using admixed individuals in GWAS: An application to maize flowering
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Accounting for Group-Specific Allele Effects and Admixture in Genomic Predictions: Theory and Experimental Evaluation in Maize
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Concevoir et évaluer les maïs du futur
Alain Charcosset
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Genetic basis of phenotypic plasticity and genotype × environment interactions in a multi-parental tomato population
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Quantitative trait loci mapping in hybrids between Dent and Flint maize multiparental populations reveals group-specific QTL for silage quality traits with variable pleiotropic effects on yield
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Assessment of breeding programs sustainability: application of phenotypic and genomic indicators to a north european grain maize program
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Water deficit-responsive QTLs for cell wall degradability and composition in maize at silage stage
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Genomic selection efficiency and a priori estimation of accuracy in a structured dent maize panel
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Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude
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Usefulness criterion and post-selection parental contributions in multi-parental crosses: Application to polygenic trait Introgression
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Training set optimization of genomic prediction by means of EthAcc
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Improving Short- and Long-Term Genetic Gain by Accounting for Within-Family Variance in Optimal Cross-Selection
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X-chromosome meiotic drive in Drosophila simulans: a QTL approach reveals the complex polygenic determinism of Paris drive suppression
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Linkage analysis and association mapping QTL detection models for hybrids between multiparental populations from two heterotic groups: application to biomass production in maize (Zea mays L.).
Héloïse Giraud
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Reciprocal genetics: identifying QTL for general and specific combining abilities in hybrids between multiparental populations from two maize (Zea mays L.) heterotic groups
Héloïse Giraud
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hal-03818440v1
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Genotyping-by-sequencing highlights original diversity patterns within a European collection of 1191 maize flint lines, as compared to the maize USDA genebank
Brigitte Gouesnard
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Predicting genomic selection efficiency to optimize calibration set and to assess prediction accuracy in highly structured populations
Renaud Rincent
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General and specific combining abilities in a maize (Zea mays L.) test-cross hybrid panel: relative importance of population structure and genetic divergence between parents
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Usefulness of Multiparental Populations of Maize (Zea mays L.) for Genome-Based Prediction
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Clusthaplo: a plug-in for MCQTL to enhance QTL detection using ancestral alleles in multi-cross design.
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Dent and flint maize diversity panels reveal important genetic potential for increasing biomass production
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Recovering power in Association Mapping Panels with variable levels of linkage disequilibrium
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Article dans une revue
hal-02634244v1
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Linkage disequilibrium with linkage analysis of multiline crosses reveals different multiallelic QTL for hybrid performance in the flint and dent heterotic groups of maize.
Héloïse Giraud
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Combined linkage and linkage disequilibrium QTL mapping in multiple families of maize (Zea mays L.) line crosses highlights complementarities between models based on parental haplotype and single locus polymorphism
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OptiMAS: A Decision Support Tool for Marker-Assisted Assembly of Diverse Alleles
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hal-02646077v1
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Diversity and linkage disequilibrium features in a composite public/private dent maize panel: consequences for association genetics as evaluated from a case study using flowering time
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hal-02643782v1
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The genetic basis of heterosis: multiparental quantitative trait loci mapping reveals contrasted levels of apparent overdominance among traits of agronomical interest in maize (Zea mays L.)
Amandine Lariepe
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hal-00986094v1
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Maximizing the reliability of genomic selection by optimizing the calibration set of reference individuals: comparison of methods in two diverse groups of maize inbreds (Zea mays L.)
Renaud Rincent
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The genetic architecture of grain yield and related traits in Zea maize L. revealed by comparing intermated and conventional populations
Yung-Fen Huang
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Genetic map construction and quantitative trait loci (QTL) mapping for nitrogen use efficiency and its relationship with productivity and quality of the biennial crop Belgian endive (Cichorium intybus L.)
Laurent Cassan
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Article dans une revue
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hal-02662433v1
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Meta-analysis of QTL involved in silage quality of maize and comparison with the position of candidate genes
Marion Truntzler
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hal-02663445v1
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QTLs and candidate genes for desiccation and abscisic acid content in maize kernels
Valérie Capelle
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hal-02662839v1
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Fine mapping and haplotype structure analysis of a major flowering time quantitative trait locus on maize chromosome 10
Sebastien Ducrocq
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hal-02667927v1
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Quantitative trait loci for leaf length in perennial ryegrass (Lolium perenne L.)
Philippe P. Barre
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hal-02660303v1
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Overview of QTL detection in plants and tests for synergistic epistatic interactions
Jean-Luc J.-L. Jannink
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hal-00964463v1
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Leaf yellowing and anthocyanin accumulation are two genetically independent strategies in response to nitrogen limitation in Arabidopsis thaliana
Celine Diaz
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hal-02661380v1
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Results of a whole genome scan targeting QTL for growth and carcass traits in a Piétrain $\times$ Large White intercross
Carine Nezer
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Article dans une revue
hal-00894417v1
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A method to optimize selection on multiple identified quantitative trait loci
Reena Chakraborty
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Article dans une revue
hal-00894405v1
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Optimal selection on two quantitative trait loci with linkage
Jack Dekkers
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Article dans une revue
hal-00894406v1
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