|
Variation in the fitness impact of translationally optimal codons among animals
Florian Bénitière
,
Tristan Lefébure
,
Laurent Duret
Article dans une revue
hal-04737716
v1
|
|
PRDM9 drives the location and rapid evolution of recombination hotspots in salmonids fish
Marie Raynaud
,
Paola Sanna
,
Julien Joseph
,
Julie A. J. Clément
,
Yukiko Imai
et al.
Article dans une revue
hal-04880059
v1
|
|
GTDrift: a resource for exploring the interplay between genetic drift, genomic and transcriptomic characteristics in eukaryotes
Florian Bénitière
,
Laurent Duret
,
Anamaria Necsulea
Article dans une revue
hal-04609512
v1
|
|
High prevalence of PRDM9-independent recombination hotspots in placental mammals
Julien Joseph
,
Djivan Prentout
,
Alexandre Laverré
,
Théo Tricou
,
Laurent Duret
Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (23), pp.e2401973121. ⟨10.1073/pnas.2401973121⟩
Article dans une revue
hal-04604269
v1
|
|
Random genetic drift sets an upper limit on mRNA splicing accuracy in metazoans
Florian Bénitière
,
Anamaria Necsulea
,
Laurent Duret
Article dans une revue
hal-04258621
v1
|
|
Population designations in biomedical research: limitations and perspectives
Caroline Gombault
,
Guillaume Grenet
,
Laure Ségurel
,
Laurent Duret
,
François Gueyffier
et al.
Article dans une revue
hal-03829218
v1
|
|
Bridging the gap between the evolutionary dynamics and the molecular mechanisms of meiosis : a model based exploration of the PRDM9 intra-genomic Red Queen
Alice Genestier
,
Laurent Duret
,
Nicolas Lartillot
Article dans une revue
hal-04272303
v2
|
|
Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes
Diamantis Sellis
,
Frédéric Guérin
,
Olivier Arnaiz
,
Walker Pett
,
Emmanuelle Lerat
et al.
Article dans une revue
hal-03366429
v1
|
|
DILS: Demographic inferences with linked selection by using ABC
Christelle Fraïsse
,
Iva Popovic
,
Clément Mazoyer
,
Bruno Spataro
,
Stephane Delmotte
et al.
Article dans une revue
hal-03156998
v1
|
|
Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest
Georgios Koutsovoulos
,
Eder Marques
,
Marie Jeanne Arguel
,
Laurent Duret
,
Andressa C. Z. Machado
et al.
Article dans une revue
hal-02444457
v1
|
|
Evolutionary plasticity of mating-type determination mechanisms in Paramecium aurelia sibling species
Natalia Sawka-Gądek
,
Alexey Potekhin
,
Deepankar Pratap Singh
,
Inessa Grevtseva
,
Olivier Arnaiz
et al.
Article dans une revue
hal-03102341
v1
|
|
How consistent is RAD‐seq divergence with DNA‐barcode based clustering in insects?
Marie Cariou
,
Hélène Henri
,
Sonia Martinez
,
Laurent Duret
,
Sylvain Charlat
Article dans une revue
hal-03017182
v1
|
|
Bedrock radioactivity influences the rate and spectrum of mutation
Nathanaëlle Saclier
,
Patrick Chardon
,
Florian Malard
,
Lara Konecny-Dupré
,
David Eme
et al.
Article dans une revue
hal-03051267
v1
|
|
Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot
Daphné Reiss
,
Gladys Mialdea
,
Vincent Miele
,
Damien M. de Vienne
,
Jean Peccoud
et al.
Article dans une revue
hal-02140494
v1
|
|
GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes
Paulina Bolívar
,
Laurent Guéguen
,
Laurent Duret
,
Hans Ellegren
,
Carina Mugal
Article dans une revue
hal-02329971
v1
|
|
Evolution of replication origins in vertebrate genomes: rapid turnover despite selective constraints
Florian Massip
,
Marc Laurent
,
Caroline Brossas
,
José miguel Fernández-Justel
,
Maria Gomez
et al.
Article dans une revue
hal-02349718
v1
|
|
Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion
Nicolas Galtier
,
Camille Roux
,
Marjolaine Rousselle
,
Jonathan Romiguier
,
Emeric Figuet
et al.
Article dans une revue
hal-01806906
v1
|
|
Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition
Laurent Guéguen
,
Laurent Duret
Article dans une revue
hal-02349724
v1
|
|
Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods
Nathanaëlle Saclier
,
Clémentine François
,
Lara Konecny-Dupré
,
Nicolas Lartillot
,
Laurent Guéguen
et al.
Article dans une revue
hal-01951580
v1
|
|
PRDM9 Methyltransferase Activity Is Essential for Meiotic DNA Double-Strand Break Formation at Its Binding Sites
Boubou Diagouraga
,
Julie Clément
,
L. Duret
,
Jan Kadlec
,
Bernard de Massy
et al.
Article dans une revue
hal-01730632
v1
|
|
In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites
C Grey
,
Julie a J Clément
,
J Buard
,
B Leblanc
,
I Gut
et al.
Article dans une revue
hal-01505240
v1
|
|
The Red Queen model of recombination hot-spot evolution: a theoretical investigation
Thibault Latrille
,
L. Duret
,
Nicolas Lartillot
Article dans une revue
hal-01891448
v1
|
|
Less effective selection leads to larger genomes
Tristan Lefébure
,
Claire Morvan
,
Florian Malard
,
Clémentine François
,
Lara Konecny-Dupré
et al.
Article dans une revue
hal-01544879
v2
|
|
Recombination, meiotic expression and human codon usage
F. Pouyet
,
Dominique Mouchiroud
,
L. Duret
,
M. Sémon
Article dans une revue
hal-01943796
v1
|
|
The global impact of Wolbachia on mitochondrial diversity and evolution
Marie Cariou
,
Laurent Duret
,
Sylvain Charlat
Article dans une revue
hal-02140486
v1
|
|
The fitness cost of mis-splicing is the main determinant of alternative splicing patterns
Baptiste Saudemont
,
Alexandra Popa
,
Joanna Parmley
,
Vincent Rocher
,
Corinne Blugeon
et al.
Article dans une revue
hal-02321589
v1
|
|
How and how much does RAD-seq bias genetic diversity estimates?
M. Cariou
,
L. Duret
,
S. Charlat
Article dans une revue
hal-02016409
v1
|
|
No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes
Clémentine François
,
L. Duret
,
Laurent Simon
,
Florian Mermillod-Blondin
,
Florian Malard
et al.
Article dans une revue
hal-01370129
v1
|
|
Occurrence of a non deleterious gene conversion event in the BRCA1 gene
C. Tessereau
,
M. Leone
,
M. Buisson
,
L. Duret
,
O. M. Sinilnikova
et al.
Article dans une revue
istex
hal-02018994
v1
|
|
GC-Content evolution in bacterial genomes: The biased gene conversion hypothesis expands
Florent Lassalle
,
Séverine Périan
,
Thomas Bataillon
,
Xavier Nesme
,
L. Duret
et al.
Article dans une revue
hal-01198362
v1
|
|
Quantification of GC-biased gene conversion in the human genome
Sylvain Glemin
,
Peter F. Arndt
,
Messer W. Philip
,
Petrov M. Dmitri
,
Nicolas Galtier
et al.
Article dans une revue
hal-01900676
v1
|
|
Optimization of multiplexed RADseq libraries using low-cost adaptors
Hélène Henri
,
Marie Cariou
,
Gabriel Terraz
,
Sonia Martinez
,
Adil El Filali
et al.
Article dans une revue
hal-03225202
v1
|
|
Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome
E. M. Kvikstad
,
L. Duret
Article dans une revue
hal-02046828
v1
|
|
The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.
Franck Picard
,
Jean-Charles Cadoret
,
Benjamin Audit
,
Alain Arneodo
,
Adriana A. Alberti
et al.
Article dans une revue
hal-00995097
v1
|
|
The Red Queen Model of Recombination Hotspots Evolution in the Light of Archaic and Modern Human Genomes
Y Lesecque
,
S. S. Glemin
,
N. Lartillot
,
D. Mouchiroud
,
L. Duret
Article dans une revue
hal-02369480
v1
|
|
Comparative population genomics in animals uncovers the determinants of genetic diversity
Jonathan Romiguier
,
P Gayral
,
M Ballenghien
,
Arnaud Bernard
,
V Cahais
et al.
Article dans une revue
hal-01313724
v1
|
|
Estimation of the RNU2 macrosatellite mutation rate by BRCA1 mutation tracing
C. Tessereau
,
Yann Lesecque
,
N. Monnet
,
M. Buisson
,
L. Barjhoux
et al.
Article dans une revue
hal-02045532
v1
|
|
GC-Biased Gene Conversion in Yeast Is Specifically Associated with Crossovers: Molecular Mechanisms and Evolutionary Significance
Y. Lesecque
,
D. Mouchiroud
,
L. Duret
Article dans une revue
hal-02281861
v1
|
|
Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization
Marie Cariou
,
Laurent Duret
,
Sylvain Charlat
Article dans une revue
hal-02140475
v1
|
|
Eloge de l'ADN poubelle
Laurent Duret
,
Sylvain Charlat
Pour la science, 2013, 81, pp.10--17
Article dans une revue
hal-02140476
v1
|
|
XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells
C. Vallot
,
C. Huret
,
Yann Lesecque
,
A. Resch
,
N. Oudrhiri
et al.
Article dans une revue
hal-02446482
v1
|
|
The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes
S. B. Montgomery
,
D. L. Goode
,
E. Kvikstad
,
C. A. Albers
,
Z. D. Zhang
et al.
Article dans une revue
hal-02282687
v1
|
|
Genome-scale coestimation of species and gene trees.
Bastien Boussau
,
Gergely J Szöllosi
,
L. Duret
,
Manolo Gouy
,
Eric Tannier
et al.
Article dans une revue
hal-00750148
v1
|
|
High-quality sequence clustering guided by network topology and multiple alignment likelihood.
Vincent Miele
,
Simon Penel
,
Vincent Daubin
,
Franck Picard
,
Daniel Kahn
et al.
Article dans une revue
hal-00965711
v1
|
|
The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences.
Olivier Arnaiz
,
Nathalie Mathy
,
Céline Baudry
,
Sophie Malinsky
,
Jean-Marc Aury
et al.
Article dans une revue
hal-00759182
v1
|
|
Evidence for Widespread GC-biased Gene Conversion in Eukaryotes
Eugénie Pessia
,
Alexandra Popa
,
Sylvain Mousset
,
Clément Rezvoy
,
Laurent Duret
et al.
Article dans une revue
hal-02282748
v1
|
|
Meiotic recombination favors the spreading of deleterious mutations in human populations
Anamaria Necsulea
,
L. Duret
,
Alexandra Popa
,
David N. Cooper
,
Peter Stentson
et al.
Article dans une revue
hal-00610795
v1
|
|
Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.
Brian P. Cusack
,
Peter F. Arndt
,
L. Duret
,
Hugues Roest Crollius
Article dans une revue
inserm-00711772
v1
|
|
Ultra-fast sequence clustering from similarity networks with SiLiX
V. Miele
,
Simon Penel
,
L. Duret
Article dans une revue
hal-00698365
v1
|
|
Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region
Corinne Chureau
,
Sophie Chantalat
,
Antonio Romito
,
Angélique Galvani
,
Laurent Duret
et al.
Article dans une revue
hal-03030487
v1
|
|
Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region
C. Chureau
,
S. Chantalat
,
A. Romito
,
A. Galvani
,
Laurent Duret
et al.
Article dans une revue
hal-02299263
v1
|
|
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations
Thierry Rouxel
,
J. Grandaubert
,
Jk. Hane
,
Claire Hoede
,
Angela P. van de Wouw
et al.
Article dans une revue
hal-00841751
v1
|
|
Detecting positive selection within genomes: the problem of biased gene conversion
A. Ratnakumar
,
Sylvain Mousset
,
S. Glémin
,
J. Berglund
,
N. Galtier
et al.
Philosophical Transactions of the Royal Society B: Biological Sciences, 2010, 365 (1552), pp.2571-2580. ⟨10.1098/rstb.2010.0007⟩
Article dans une revue
hal-00539495
v1
|
|
<i>Paramecium tetraurelia:</i> The Renaissance of an Early Unicellular Model
J. Beisson
,
M. Bétermier
,
M.-H. Bré
,
J. Cohen
,
S. Duharcourt
et al.
Emerging Model Organisms, 2010, 2010(1), pp.1-55
Article dans une revue
hal-00539398
v1
|
|
Paramecium tetraurelia: The Renaissance of an Early Unicellular Model
J. Beisson
,
M. Bétermier
,
M-H. Bré
,
J. Cohen
,
S. Duharcourt
et al.
Emerging Model Organisms, 2010, 2010, pp.1-55
Article dans une revue
hal-02305011
v1
|
|
Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia.
Olivier Arnaiz
,
Jean-François Goût
,
Mireille Bétermier
,
Khaled Bouhouche
,
Jean Cohen
et al.
Article dans une revue
inserm-00617225
v1
|
|
The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution
Jean-François Gout
,
Daniel Kahn
,
Laurent Duret
Article dans une revue
hal-00539474
v2
|
|
Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes
L. Duret
,
N. Galtier
Annual Review of Genomics and Human Genetics, 2009, 10, pp.285-311
Article dans une revue
hal-00428399
v1
|
|
Databases of Homologous Gene Families for Comparative Genomics
Simon Penel
,
Anne-Muriel Arigon Chifolleau
,
Jean-François Dufayard
,
Anne-Sophie Sertier
,
Vincent Daubin
et al.
Article dans une revue
lirmm-00400099
v1
|
|
Monoallelic expression and tissue specificity are associated with high crossover rates
A. Necşulea
,
M. Sémon
,
L. Duret
,
L.D. Hurst
Trends in Genetics, 2009, 25(12), pp.519-522
Article dans une revue
hal-00539368
v1
|
|
Mutation Patterns in the Human Genome:More Variable Than Expected
L. Duret
PLoS Biology, 2009, 7(2) e1000028, pp.803-806
Article dans une revue
hal-00428326
v1
|
|
GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates
N. Galtier
,
L. Duret
,
S. Glémin
,
Vincent Ranwez
Trends in Genetics, 2009, 25(1), pp.1-5
Article dans une revue
hal-00428324
v1
|
|
The relationship between DNA replication and human genome organization.
Anamaria Necsulea
,
Claire Guillet
,
Jean-Charles Cadoret
,
Marie-Noëlle Prioleau
,
L. Duret
Article dans une revue
hal-00353551
v1
|
|
Differential retention of metabolic genes following whole-genome duplication
Jean-François Gout
,
Laurent Duret
,
Daniel Kahn
Article dans une revue
hal-00428358
v2
|
|
Comment on “Human-Specific Gain of Function in a Developmental Enhancer”
L. Duret
,
N. Galtier
Science, 2009, 323(5915), pp.714-715
Article dans une revue
hal-00428327
v1
|
|
L’évolution des chromosomes sexuels humains
Gabriel Marais
,
L. Duret
Biofutur, 2009, 304, pp.40-41
Article dans une revue
hal-00539330
v1
|
|
The Impact of Recombination on Nucleotide Substitutions in the Human Genome
L. Duret
,
P.F. Arndt
PLoS Genetics, 2008, 4, pp.1-19
Article dans une revue
hal-00428172
v1
|
|
Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.
L. Duret
,
Jean Cohen
,
Claire Jubin
,
Philippe Dessen
,
Jean-François Goût
et al.
Article dans une revue
hal-00282468
v1
|
|
Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: A somatic view of the germline
L. Duret
,
J. Cohen
,
C. Jubin
,
P. Dessen
,
J.-F. Gout
et al.
Article dans une revue
hal-00428190
v1
|
|
Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes
A. Studer
,
Simon Penel
,
L. Duret
,
M. Robinson-Rechavi
Genome Research, 2008, 18, pp.1393-1402
Article dans une revue
hal-00428199
v1
|
|
ISG20L2, a novel vertebrate nucleolar exoribonuclease involved in Ribosome biogenesis.
Yohann Couté
,
Karine Kindbeiter
,
Stéphane Belin
,
Régis Dieckmann
,
L. Duret
et al.
Article dans une revue
hal-00196384
v1
|
|
Genome-wide studies highlight indirect links between human replication origins and gene regulation.
Jean-Charles Cadoret
,
Françoise Meisch
,
Vahideh Hassan-Zadeh
,
Isabelle Luyten
,
Claire Guillet
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2008, 105 (41), pp.15837-42. ⟨10.1073/pnas.0805208105⟩
Article dans une revue
hal-00332341
v1
|
|
Biased Gene Conversion and its Impact on Human Genome Evolution
N. Galtier
,
L. Duret
incollection, 2008, --, pp.273-277
Article dans une revue
hal-00428241
v1
|
|
Translational control of intron splicing in eukaryotes
Olivier Jaillon
,
Khaled Bouhouche
,
Jean-François Gout
,
Jean-Marc Aury
,
Benjamin Noel
et al.
Article dans une revue
cea-00945555
v1
|
|
Neutral Theory: The Null Hypothesis of Molecular Evolution
L. Duret
Nature Education, 2008, 1 (1), pp.803-806
Article dans une revue
hal-00428242
v1
|
|
Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution
Nicolas Galtier
,
L. Duret
Article dans une revue
istex
halsde-00424420
v1
|
|
Unexpected observations after mapping LongSAGE tags to the human genome
C. Keime
,
M. Sémon
,
Dominique Mouchiroud
,
L. Duret
,
Olivier Gandrillon
BMC Bioinformatics, 2007, 8, pp.1-11
Article dans une revue
hal-00434613
v1
|
|
Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies.
Karine Buchet-Poyau
,
Julien Courchet
,
Hervé Le Hir
,
Bertrand Séraphin
,
Jean-Yves Scoazec
et al.
Article dans une revue
hal-00167447
v1
|
|
Unexpected observations after mapping LongSAGE tags to the human genome.
Céline Keime
,
Marie Sémon
,
Dominique Mouchiroud
,
Laurent Duret
,
Olivier Gandrillon
Article dans une revue
hal-00193777
v1
|
|
The GC Content of Primates and Rodents Genomes Is Not at Equilibrium : a Reply to Antezana
L. Duret
Journal of Molecular Evolution, 2006, --, pp.803-806
Article dans une revue
hal-00427950
v1
|
|
Insights into social insects from the genome of the honeybee <i>Apis mellifera</i>
G.M. Weinstock
,
G.E. Robinson
,
R.A. Gibbs
,
K.C. Worley
,
J.D. Evans
et al.
Nature, 2006, 443, pp.931-949
Article dans une revue
hal-00428044
v1
|
|
No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans
M. Sémon
,
J.R. Lobry
,
L. Duret
Molecular Biology and Evolution, 2006, 23, pp.523-529
Article dans une revue
hal-00428013
v1
|
|
GC Content Evolution of the Human and Mouse Genomes : Insights from the Study of Processed Pseudogenes in Regions of Different Recombination Rates.
A. Khelifi
,
J. Meunier
,
L. Duret
,
Dominique Mouchiroud
Journal of Molecular Evolution, 2006, 62, pp.745-752
Article dans une revue
hal-00427980
v1
|
|
Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.
Jean-Marc Aury
,
Olivier Jaillon
,
L. Duret
,
Benjamin Noel
,
Claire Jubin
et al.
Article dans une revue
hal-00132091
v1
|
|
The <i>Xist</i> RNA Gene Evolved in Eutherians by Pseudogenization of a Protein-Coding Gene
L. Duret
,
C. Chureau
,
S. Samain
,
J. Weissenbach
,
P. Avner
Science, 2006, 312, pp.1653-1655
Article dans une revue
hal-00427928
v1
|
|
Evolutionary origin and maintenance of coexpressed gene clusters in mammals.
M. Sémon
,
L. Duret
Molecular Biology and Evolution, 2006, 23, pp.1715-1723
Article dans une revue
hal-00428012
v1
|
|
A new perspective on isochore evolution
Laurent Duret
,
Adam Eyre-Walker
,
Nicolas Galtier
Article dans une revue
istex
halsde-00340990
v1
|
|
Les trésors cachés du génome humain
L. Duret
Pour la science, 2005, --, pp.16-21
Article dans une revue
hal-00427745
v1
|
|
Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance
M. Sémon
,
Dominique Mouchiroud
,
L. Duret
Human Molecular Genetics, 2005, 14, pp.421-427
Article dans une revue
hal-00427850
v1
|
|
Natural history of the ERVWE1 endogenous retroviral locus
B. Bonnaud
,
J. Beliaeff
,
O. Bouton
,
G. Oriol
,
L. Duret
et al.
Retrovirology, 2005, 2, pp.1-7
Article dans une revue
hal-00427715
v1
|
|
Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.
Jean-François Dufayard
,
L. Duret
,
Simon Penel
,
Manolo Gouy
,
F. Rechenmann
et al.
Article dans une revue
hal-00427861
v1
|
|
Natural history of the ERVWE 1 endogenous retroviral locus.
Bertrand Bonnaud
,
Jean Beliaeff
,
Olivier Bouton
,
Guy Oriol
,
Laurent Duret
et al.
Article dans une revue
hal-00021661
v1
|
|
Bioinformatics with a French accent
L.D. Hurst
,
L. Duret
Genome Biology, 2005, 6, pp.349.1-349.3
Article dans une revue
hal-00427767
v1
|
|
HOPPSIGEN: a database of human and mouse processed pseudogenes.
A. Khelifi
,
L. Duret
,
Dominique Mouchiroud
Article dans une revue
hal-00427774
v1
|
|
Homology-dependent methylation in primate repetitive DNA.
J. Meunier
,
A. Khelifi
,
V. Navratil
,
L. Duret
Proceedings of the National Academy of Sciences of the United States of America, 2005, 102 (15), pp.5471-6. ⟨10.1073/pnas.0408986102⟩
Article dans une revue
hal-00427789
v1
|
|
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.
P. Kersey
,
L. Bower
,
L. Morris
,
A. Horne
,
R. Petryszak
et al.
Article dans une revue
hal-00427773
v1
|
|
Polymorphix: a sequence polymorphism database
E. Bazin
,
L. Duret
,
Simon Penel
,
N. Galtier
Nucleic Acids Research, 2005, 33, pp.481-484
Article dans une revue
hal-00427707
v1
|
|
Grid as a bioinformatic tool
N. Jacq
,
Christophe Blanchet
,
C. Combet
,
E. Cornillot
,
L. Duret
et al.
Article dans une revue
in2p3-00023218
v1
|
|
Physical and transcript map of the autosomal dominant colobomatous microphthalmia locus on chromosome 15q12-q15 and refinement to a 4.4 Mb region.
Laetitia Michon
,
Laurette Morlé
,
Muriel Bozon
,
L. Duret
,
Jean-Christophe Zech
et al.
Article dans une revue
hal-00425119
v1
|
|
Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.
Céline Keime
,
Francesca Damiola
,
Dominique Mouchiroud
,
Laurent Duret
,
Olivier Gandrillon
Article dans une revue
hal-00193784
v1
|
|
Evidence that functional transcription units cover at least half of the human genome
M. Sémon
,
L. Duret
Trends in Genetics, 2004, 20, pp.229-232
Article dans une revue
hal-00427647
v1
|
|
The Decline of Isochores in Mammals: An Assessment of the GC Content Variation Along the Mammalian Phylogeny
E. Belle
,
L. Duret
,
N. Galtier
,
A. Eyre-Walker
Journal of Molecular Evolution, 2004, 58, pp.653-660
Article dans une revue
hal-00427539
v1
|
|
The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology
Frédéric Mallet
,
O. Bouton
,
S. Prudhomme
,
V. Cheynet
,
G. Oriol
et al.
Proceedings of the National Academy of Sciences of the United States of America, 2004, 101, pp.1731-1736
Article dans une revue
hal-00427686
v1
|
|
Recombination drives the evolution of GC-content in the human genome
J. Meunier
,
L. Duret
Molecular Biology and Evolution, 2004, 21, pp.984-990
Article dans une revue
hal-00427624
v1
|
|
Evidence of Selection on the Domesticated ERVWE1 env Retroviral Element Involved in Placentation
B. Bonnaud
,
O. Bouton
,
G. Oriol
,
V. Cheynet
,
L. Duret
et al.
Molecular Biology and Evolution, 2004, 21, pp.1895-1901
Article dans une revue
hal-00427546
v1
|
|
Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.
C. Keime
,
F. Damiola
,
D. Mouchiroud
,
L. Duret
,
O. Gandrillon
BMC Bioinformatics, 2004, 5, pp.143
Article dans une revue
hal-00124096
v1
|
|
Identitag a relational database for SAGE tag identification and interspecies comparison of SAGE libraries
C. Keime
,
F. Damiola
,
Dominique Mouchiroud
,
L. Duret
,
Olivier Gandrillon
BMC Bioinformatics, 2004, 5, pp.1-12
Article dans une revue
hal-00427517
v1
|
|
Grid as a bioinformatic tool
N. Jacq
,
Christophe Blanchet
,
C. Combet
,
E. Cornillot
,
L. Duret
et al.
Parallel Computing, 2004, 30, pp.1093-1107
Article dans une revue
hal-00427599
v1
|
|
ROSO : Research on Optimized Oligonucleotide Probes for Microarrays
N. Reymond
,
H. Charles
,
L. Duret
,
Federica Calevro
,
G. Beslon
et al.
Bioinformatics, 2004, 20, pp.271-273
Article dans une revue
hal-00427641
v1
|
|
Grid as a bioinformatic tool
N. Jacq
,
Christophe Blanchet
,
C. Combet
,
E. Cornillot
,
L. Duret
et al.
Parallel Computing, 2004, 30, pp.1093-1107
Article dans une revue
hal-00314551
v1
|
|
Physical and transcript map of the autosomal dominant colobomatous microphthalmia locus on chromosome 15q12-q15 and refinement to a 4.4 Mb region.
Laurent Michon
,
L. Morle
,
M. Bozon
,
L. Duret
,
Zech J. C.
et al.
European Journal of Human Genetics, 2004, 12, pp.574-578
Article dans une revue
hal-00161402
v1
|
|
Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form
O. Assossou
,
F. Besson
,
J.P. Rouault
,
F. Persat
,
C. Brisson
et al.
Article dans une revue
hal-00427496
v1
|
|
Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.
Carène Rizzon
,
Edwige Martin
,
Gabriel Marais
,
Laurent Duret
,
Laurent Ségalat
et al.
Genetics, 2003, 165 (3), pp.1127-35
Article dans une revue
hal-00194461
v1
|
|
Placenta-Specific INSL4 Expression Is Mediated by a Human Endogenous Retrovirus Element
I. Bièche
,
A. Laurent
,
I. Laurendeau
,
L. Duret
,
Y. Giovangrandi
et al.
Biology of Reproduction, 2003, 68, pp.1422-1429
Article dans une revue
hal-00427363
v1
|
|
Neutral effect of recombination on base composition in Drosophila
Gabriel Marais
,
Dominique Mouchiroud
,
L. Duret
Genetical Research, 2003, 81, pp.79-89
Article dans une revue
hal-00427447
v1
|
|
Integrated databanks access and sequence/structure analysis services at the PBIL.
G. Perriere
,
C. Combet
,
Simon Penel
,
Christophe Blanchet
,
J. Thioulouse
et al.
Article dans une revue
hal-00313743
v1
|
|
Patterns of selection against transposons inferred from the distribution of Tcl, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.
C. Rizzon
,
E. Martin
,
G. Marais
,
L. Duret
,
L. Segalat
et al.
Genetics, 2003, 165, pp.1127-1135
Article dans une revue
hal-00144031
v1
|
|
Patterns of selection against transposons inferred from the distribution of Tc1 Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans
C. Rizzon
,
E. Martin
,
Gabriel Marais
,
L. Duret
,
L. Segalat
et al.
Genetics, 2003, 165, pp.1127-1135
Article dans une revue
hal-00427476
v1
|
|
Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form
Jean-Pierre Rouault
,
Olga Assossou
,
Franã§oise Besson
,
Florence Persat
,
Christine Brisson
et al.
Article dans une revue
hal-02998536
v1
|
|
Comparative sequence analysis of the X-inactivation center region in mouse human and bovine
C. Chureau
,
M. Prissette
,
A. Bourdet
,
Valérie Barbe
,
Laurence Cattolico
et al.
Genome Research, 2002, 12, pp.894-908
Article dans une revue
hal-00427257
v1
|
|
Vanishing GC-Rich Isochores in Mammalian Genomes
L. Duret
,
M. Sémon
,
G. Piganeau
,
Dominique Mouchiroud
,
N. Galtier
Genetics, 2002, 162, pp.1837-1848
Article dans une revue
hal-00427269
v1
|
|
Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores
G. Piganeau
,
Dominique Mouchiroud
,
L. Duret
,
Christian Gautier
Journal of Molecular Evolution, 2002, 54, pp.129-133
Article dans une revue
hal-00427292
v1
|
|
Evolution of synonymous codon usage in metazoans
L. Duret
Current Opinion in Genetics and Development, 2002, 12, pp.640-649
Article dans une revue
hal-00427267
v1
|
|
Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants
L. Duret
Bioinformatics, 2002, 18, pp.S91-S91
Article dans une revue
hal-00427268
v1
|
|
Comparative sequence analysis of the X-inactivation center region in mouse, human, and bovine.
C. Chureau
,
M. Prissette
,
A. Bourdet
,
Valérie Barbe
,
L. Cattolico
et al.
Genome Research, 2002, 12, pp.894-908
Article dans une revue
hal-02672161
v1
|
|
Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes
Gabriel Marais
,
Dominique Mouchiroud
,
L. Duret
Proceedings of the National Academy of Sciences of the United States of America, 2001, 98, pp.5688-5692
Article dans une revue
hal-00427184
v1
|
|
Determinants of CpG islands: expression in early embryo and isochore structure
L. Ponger
,
L. Duret
,
Dominique Mouchiroud
Genome Research, 2001, 11, pp.1854-1860
Article dans une revue
hal-00427189
v1
|
|
Why do genes have introns? Recombination might add a new piece to the puzzle
L. Duret
Trends in Genetics, 2001, 17, pp.172-175
Article dans une revue
hal-00427168
v1
|
|
Organisation Fonctionnement et Evolution des Génomes de Métazoaires : Mais où est donc passée la sélection naturelle ?
L. Duret
incollection, 2001, --, pp.287-289
Article dans une revue
hal-00427170
v1
|
|
The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution
L. Duret
,
L.D. Hurst
Molecular Biology and Evolution, 2001, 18, pp.757-762
Article dans une revue
hal-00427169
v1
|
|
Synonymous codon usage accuracy of translation and gene length in Caenorhabditis elegans
Gabriel Marais
,
L. Duret
Journal of Molecular Evolution, 2001, 52, pp.275-280
Article dans une revue
hal-00427183
v1
|
|
GC-content evolution in mammalian genomes: the biased gene conversion hypothesis
N. Galtier
,
G. Piganeau
,
Dominique Mouchiroud
,
L. Duret
Genetics, 2001, 159, pp.907-911
Article dans une revue
hal-00427173
v1
|
|
Plant Physiol.A Medicago truncatula homoglutathione synthetase is derived from glutathione synthetase by gene duplication
P. Frendo
,
M.J. Jimenez
,
C. Mathieu
,
L. Duret
,
D. Gallesi
et al.
Plant Physiology, 2001, 126, pp.1706-1715
Article dans une revue
hal-00427171
v1
|
|
Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans
L. Duret
,
Gabriel Marais
,
C. Biémont
Genetics, 2000, 156, pp.1661-1669
Article dans une revue
hal-00427072
v1
|
|
Chromosomal distribution and coding capacity of the human endogenous retrovirus HERV-W family
C. Voisset
,
O. Bouton
,
F. Bedin
,
L. Duret
,
B. Mandrand
et al.
AIDS Research and Human Retroviruses, 2000, 16, pp.731-740
Article dans une revue
hal-00427112
v1
|
|
HOBACGEN: database system for comparative genomics in bacteria
G. Perrière
,
L. Duret
,
Manolo Gouy
Article dans une revue
hal-00427099
v1
|
|
The covariation between TpA deficiency CpG deficiency and G+C content of human isochores is due to a mathematical artifact
L. Duret
,
N. Galtier
Molecular Biology and Evolution, 2000, 17, pp.1620-1625
Article dans une revue
hal-00427077
v1
|
|
tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes
L. Duret
Trends in Genetics, 2000, 16, pp.287-289
Article dans une revue
hal-00427076
v1
|
|
Identification and molecular analysis of BANP
Anne-Marie Birot
,
Laurent Duret
,
Laurent Bartholin
,
Bénédicte Santalucia
,
Isabelle Tigaud
et al.
Article dans une revue
istex
hal-02998585
v1
|
|
Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate
L. Duret
,
Dominique Mouchiroud
Molecular Biology and Evolution, 2000, 17, pp.68-74
Article dans une revue
hal-00427068
v1
|
|
Nature and structure of human genes that generate retropseudogenes
I. Goncalves
,
L. Duret
,
Dominique Mouchiroud
Genome Research, 2000, 10, pp.672-678
Article dans une revue
hal-00427085
v1
|
|
Use of a TT virus ORF1 recombinant protein to detect anti-TT virus antibodies in human sera
C. Ott
,
L. Duret
,
I. Chemin
,
C. Trepo
,
B. Mandrand
et al.
Journal of General Virology, 2000, 81, pp.2949-2958
Article dans une revue
hal-00427092
v1
|
|
Multiple alignments for structural functional or phylogenetic analyses of homologous sequences
L. Duret
,
S. Abdeddaim
incollection, 2000, --, pp.51-76
Article dans une revue
hal-00427048
v1
|
|
Molecular characterization and placental expression of HERV-W a new human endogenous retrovirus family
J.L. Blond
,
F. Beseme
,
L. Duret
,
O. Bouton
,
F. Bedin
et al.
Journal of Virology, 1999, 73, pp.1175-1185
Article dans une revue
hal-00428437
v1
|
|
Regulation of dauer larva development in Caenorhabditis elegans by daf-18, a homologue of the tumour suppressor PTEN
Jean-Pierre Rouault
,
Patricia Kuwabara
,
Olga Sinilnikova
,
Laurent Duret
,
Danielle Thierry-Mieg
et al.
Article dans une revue
hal-02998593
v1
|
|
Expression pattern and surprisingly gene length shape codon usage in Caenorhabditis Drosophila and Arabidopsis
L. Duret
,
Dominique Mouchiroud
Proceedings of the National Academy of Sciences of the United States of America, 1999, 96, pp.4482-4487
Article dans une revue
hal-00428427
v1
|
|
Human and nematode orthologs--lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans
S.J. Wheelan
,
M.S. Boguski
,
L. Duret
,
W. Makalowski
Gene, 1999, 238, pp.163-170
Article dans une revue
hal-00428467
v1
|
|
New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling
L. Duret
,
N. Guex
,
M.C. Peitsch
,
A. Bairoch
Genome Research, 1998, 8, pp.348-353
Article dans une revue
hal-00428485
v1
|
|
Highly conserved RNA sequences that are sensors of environmental stress
A. Spicher
,
O.M. Guicherit
,
L. Duret
,
A. Aslanian
,
E.M. Sanjines
et al.
Molecular and Cellular Biology, 1998, 18, pp.7371-7382
Article dans une revue
hal-00428502
v1
|
|
Cloning and characterization of a gene encoding a novel immunodominant antigen of Trypanosoma cruzi
M. Lesenechal
,
L. Duret
,
M.I. Cano
,
R.A. Mortara
,
M. Jolivet
et al.
Molecular and Biochemical Parasitology, 1997, 87, pp.193-204
Article dans une revue
hal-00434988
v1
|
|
Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata
D. Graur
,
Manolo Gouy
,
L. Duret
Article dans une revue
istex
hal-00434984
v1
|
|
Cloning of the mouse BTG3 gene and definition of a new gene family (the BTG family) involved in the negative control of the cell cycle
F Guéhenneux
,
L. Duret
,
Mb Callanan
,
R Bouhas
,
S Hayette
et al.
Article dans une revue
hal-02998613
v1
|
|
Searching for regulatory elements in human noncoding sequences
L. Duret
,
P. Bucher
Current Opinion in Structural Biology, 1997, 7, pp.399-406
Article dans une revue
hal-00434977
v1
|
|
LALNVIEW: a graphical viewer for pairwise sequence alignments
L. Duret
,
E. Gasteiger
,
G. Perrière
Computer Applications in the Biosciences, 1996, 12, pp.507-510
Article dans une revue
hal-00435026
v1
|
|
Phylogenetic position of the order Lagomorpha (rabbits hares and allies)
D. Graur
,
L. Duret
,
Manolo Gouy
Article dans une revue
istex
hal-00435019
v1
|
|
Isolation and characterization of a cDNA encoding a chicken actin-like protein
J.J. Michaille
,
Manolo Gouy
,
Simon Blanchet
,
L. Duret
Article dans une revue
istex
hal-00698055
v1
|
|
Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores
L. Duret
,
Dominique Mouchiroud
,
Christian Gautier
Journal of Molecular Evolution, 1995, 40, pp.308-317
Article dans une revue
hal-00698070
v1
|
|
HOVERGEN: a database of homologous vertebrate genes
L. Duret
,
Dominique Mouchiroud
,
Manolo Gouy
Article dans une revue
hal-00698069
v1
|
|
Rearrangement of CCND1 (BCL1/PRAD1) 3' untranslated region in mantle-cell lymphomas and t(11q13)-associated leukemias
R. Rimokh
,
F. Berger
,
C. Bastard
,
B. Klein
,
M. French
et al.
Blood, 1994, 83, pp.3689-3696
Article dans une revue
hal-00698183
v1
|
|
Sequence analysis reveals that the BTG1 anti-proliferative gene is conserved throughout evolution in its coding and 3' non-coding regions
Jean-Pierre Rouault
,
J.P. Rouault
,
C. Samarut
,
L. Duret
,
C. Tessa
et al.
Article dans une revue
istex
hal-02998651
v1
|
|
BTG1, a member of a new family of antiproliferative genes.
Jean-Pierre Rouault
,
R. Rimokh
,
C. Tessa
,
G. Paranhos
,
M. Ffrench
et al.
Article dans une revue
hal-02998663
v1
|