Laurent Duret

164

Documents

Publications

Why recombination hotspots?

Julien Joseph , Thomas Brazier , Marie Raynaud , Sylvain Glémin , Frédéric Baudat et al.

PLoS Genetics, 2026, 22 (5), pp.e1012152. ⟨10.1371/journal.pgen.1012152⟩

Article dans une revue (article de synthèse) hal-05628380v1

The tiny germline chromosomes of Paramecium aurelia have an exceptionally high recombination rate and are capped by a new class of Helitrons

Olivier Arnaiz , Frédéric Guérin , Arnaud Couloux , Caridad Miró-Pina , Guillaume Pellerin et al.

BMC Biology, 2026, 24 (1), pp.99. ⟨10.1186/s12915-026-02584-w⟩

Article dans une revue (data paper) hal-05601062v1

PRDM9 drives the location and rapid evolution of recombination hotspots in salmonids fish

Marie Raynaud , Paola Sanna , Julien Joseph , Julie A. J. Clément , Yukiko Imai et al.

PLoS Biology, 2025, 23 (1), pp.e3002950. ⟨10.1371/journal.pbio.3002950⟩

Article dans une revue hal-04880059v1

Variation in the fitness impact of translationally optimal codons among animals

Florian Bénitière , Tristan Lefébure , Laurent Duret

Genome Research, 2025, 35 (3), pp.446-458. ⟨10.1101/gr.279837.124⟩

Article dans une revue hal-04737716v1

Random genetic drift sets an upper limit on mRNA splicing accuracy in metazoans

Florian Bénitière , Anamaria Necsulea , Laurent Duret

eLife, 2024, 13, pp.RP93629. ⟨10.7554/eLife.93629.3⟩

Article dans une revue hal-04258621v1

High prevalence of PRDM9-independent recombination hotspots in placental mammals

Julien Joseph , Djivan Prentout , Alexandre Laverré , Théo Tricou , Laurent Duret

Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (23), pp.e2401973121. ⟨10.1073/pnas.2401973121⟩

Article dans une revue hal-04604269v1

GTDrift: a resource for exploring the interplay between genetic drift, genomic and transcriptomic characteristics in eukaryotes

Florian Bénitière , Laurent Duret , Anamaria Necsulea

NAR Genomics and Bioinformatics, 2024, 6 (2), pp.lqae064. ⟨10.1093/nargab/lqae064⟩

Article dans une revue hal-04609512v1

Bridging the gap between the evolutionary dynamics and the molecular mechanisms of meiosis : a model based exploration of the PRDM9 intra-genomic Red Queen

Alice Genestier , Laurent Duret , Nicolas Lartillot

PLoS Genetics, 2024, 20 (5), pp.e1011274. ⟨10.1371/journal.pgen.1011274⟩

Article dans une revue hal-04272303v2

Population designations in biomedical research: limitations and perspectives

Caroline Gombault , Guillaume Grenet , Laure Ségurel , Laurent Duret , François Gueyffier et al.

HLA: Immune Response Genetics, 2023, 101 (1), pp.3-15. ⟨10.1111/tan.14852⟩

Article dans une revue hal-03829218v1

DILS: Demographic inferences with linked selection by using ABC

Christelle Fraïsse , Iva Popovic , Clément Mazoyer , Bruno Spataro , Stephane Delmotte et al.

Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13323⟩

Article dans une revue hal-03156998v1

Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes

Diamantis Sellis , Frédéric Guérin , Olivier Arnaiz , Walker Pett , Emmanuelle Lerat et al.

PLoS Biology, 2021, 19 (7), pp.e3001309. ⟨10.1371/journal.pbio.3001309⟩

Article dans une revue hal-03366429v1

How consistent is RAD‐seq divergence with DNA‐barcode based clustering in insects?

Marie Cariou , Hélène Henri , Sonia Martinez , Laurent Duret , Sylvain Charlat

Molecular Ecology Resources, 2020, 20 (5), pp.1294-1298. ⟨10.1111/1755-0998.13178⟩

Article dans une revue hal-03017182v1

Evolutionary plasticity of mating-type determination mechanisms in Paramecium aurelia sibling species

Natalia Sawka-Gądek , Alexey Potekhin , Deepankar Pratap Singh , Inessa Grevtseva , Olivier Arnaiz et al.

Genome Biology and Evolution, 2020, evaa258, ⟨10.1093/gbe/evaa258⟩

Article dans une revue hal-03102341v1

Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest

Georgios Koutsovoulos , Eder Marques , Marie Jeanne Arguel , Laurent Duret , Andressa C. Z. Machado et al.

Evolutionary Applications, 2020, 13, pp.442-457. ⟨10.1111/eva.12881⟩

Article dans une revue hal-02444457v1

Bedrock radioactivity influences the rate and spectrum of mutation

Nathanaëlle Saclier , Patrick Chardon , Florian Malard , Lara Konecny-Dupré , David Eme et al.

eLife, 2020, 9, pp.e56830. ⟨10.7554/eLife.56830⟩

Article dans une revue hal-03051267v1

Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot

Daphné Reiss , Gladys Mialdea , Vincent Miele , Damien M. de Vienne , Jean Peccoud et al.

PLoS Genetics, 2019, 15 (2), pp.e1007965. ⟨10.1371/journal.pgen.1007965⟩

Article dans une revue hal-02140494v1

GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

Paulina Bolívar , Laurent Guéguen , Laurent Duret , Hans Ellegren , Carina Mugal

Genome Biology, 2019, 20 (1), ⟨10.1186/s13059-018-1613-z⟩

Article dans une revue hal-02329971v1

Evolution of replication origins in vertebrate genomes: rapid turnover despite selective constraints

Florian Massip , Marc Laurent , Caroline Brossas , José miguel Fernández-Justel , Maria Gomez et al.

Nucleic Acids Research, 2019, 47 (10), pp.5114-5125. ⟨10.1093/nar/gkz182⟩

Article dans une revue hal-02349718v1

Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition

Laurent Guéguen , Laurent Duret

Molecular Biology and Evolution, 2018, 35 (3), pp.734-742. ⟨10.1093/molbev/msx308⟩

Article dans une revue hal-02349724v1

Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods

Nathanaëlle Saclier , Clémentine François , Lara Konecny-Dupré , Nicolas Lartillot , Laurent Guéguen et al.

Molecular Biology and Evolution, 2018, 35 (12), pp.2900-2912. ⟨10.1093/molbev/msy184⟩

Article dans une revue hal-01951580v1

Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion

Nicolas Galtier , Camille Roux , Marjolaine Rousselle , Jonathan Romiguier , Emeric Figuet et al.

Molecular Biology and Evolution, 2018, 35 (5), pp.1092 - 1103. ⟨10.1093/molbev/msy015⟩

Article dans une revue hal-01806906v1

PRDM9 Methyltransferase Activity Is Essential for Meiotic DNA Double-Strand Break Formation at Its Binding Sites

Boubou Diagouraga , Julie Clément , L. Duret , Jan Kadlec , Bernard de Massy et al.

Molecular Cell, 2018, 69 (5), pp.853 - 865.e6. ⟨10.1016/j.molcel.2018.01.033⟩

Article dans une revue hal-01730632v1

The Red Queen model of recombination hot-spot evolution: a theoretical investigation

Thibault Latrille , L. Duret , Nicolas Lartillot

Philosophical Transactions of the Royal Society B: Biological Sciences, 2017, ⟨10.1098/rstb.2016.0463⟩

Article dans une revue hal-01891448v1

In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites

C Grey , Julie a J Clément , J Buard , B Leblanc , I Gut et al.

Genome Research, 2017, 27 (4), pp.580-590. ⟨10.1101/gr.217240.116⟩

Article dans une revue hal-01505240v1

Recombination, meiotic expression and human codon usage

F. Pouyet , Dominique Mouchiroud , L. Duret , M. Sémon

eLife, 2017, 6, pp.e27344. ⟨10.7554/eLife.27344.001⟩

Article dans une revue hal-01943796v1

Less effective selection leads to larger genomes

Tristan Lefébure , Claire Morvan , Florian Malard , Clémentine François , Lara Konecny-Dupré et al.

Genome Research, 2017, 27, pp.1016-1028. ⟨10.1101/gr.212589.116⟩

Article dans une revue hal-01544879v2

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns

Baptiste Saudemont , Alexandra Popa , Joanna Parmley , Vincent Rocher , Corinne Blugeon et al.

Genome Biology, 2017, 18, pp.208. ⟨10.1186/s13059-017-1344-6⟩

Article dans une revue hal-02321589v1

The global impact of Wolbachia on mitochondrial diversity and evolution

Marie Cariou , Laurent Duret , Sylvain Charlat

Journal of Evolutionary Biology, 2017, 30 (12), pp.2204-2210. ⟨10.1111/jeb.13186⟩

Article dans une revue hal-02140486v1

How and how much does RAD-seq bias genetic diversity estimates?

M. Cariou , L. Duret , Sylvain Charlat

BMC Evolutionary Biology, 2016, 16, pp.240. ⟨10.1186/s12862-016-0791-0⟩

Article dans une revue hal-02016409v1

No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes

Clémentine François , L. Duret , Laurent Simon , Florian Mermillod-Blondin , Florian Malard et al.

Molecular Biology and Evolution, 2016, 33 (10), pp.2605-2620. ⟨10.1093/molbev/msw131⟩

Article dans une revue hal-01370129v1

Quantification of GC-biased gene conversion in the human genome

Sylvain Glemin , Peter F. Arndt , Messer W. Philip , Petrov M. Dmitri , Nicolas Galtier et al.

Genome Research, 2015, 25 (8), pp.1215 - 1228. ⟨10.1101/gr.185488.114⟩

Article dans une revue hal-01900676v1

GC-Content evolution in bacterial genomes: The biased gene conversion hypothesis expands

Florent Lassalle , Séverine Périan , Thomas Bataillon , Xavier Nesme , L. Duret et al.

PLoS Genetics, 2015, 11 (2), pp.1-20. ⟨10.1371/journal.pgen.1004941⟩

Article dans une revue hal-01198362v1

Occurrence of a non deleterious gene conversion event in the BRCA1 gene

C. Tessereau , M. Leone , M. Buisson , L. Duret , O. M. Sinilnikova et al.

Genes, Chromosomes & Cancer, 2015, 54, pp.646-52. ⟨10.1002/gcc.22278⟩

Article dans une revue istex hal-02018994v1

Optimization of multiplexed RADseq libraries using low-cost adaptors

Hélène Henri , Marie Cariou , Gabriel Terraz , Sonia Martinez , Adil El Filali et al.

Genetica, 2015, 143 (2), pp.139-143. ⟨10.1007/s10709-015-9828-3⟩

Article dans une revue hal-03225202v1

The Red Queen Model of Recombination Hotspots Evolution in the Light of Archaic and Modern Human Genomes

Y Lesecque , S. S. Glemin , N. Lartillot , D. Mouchiroud , L. Duret

PLoS Genetics, 2014, 10, pp.e1004790. ⟨10.1371/journal.pgen.1004790⟩

Article dans une revue hal-02369480v1

Comparative population genomics in animals uncovers the determinants of genetic diversity

Jonathan Romiguier , P Gayral , M Ballenghien , Arnaud Bernard , V Cahais et al.

Nature, 2014, 515 (7526), pp.261-263. ⟨10.1038/nature13685⟩

Article dans une revue hal-01313724v1

The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.

Franck Picard , Jean-Charles Cadoret , Benjamin Audit , Alain Arneodo , Adriana A. Alberti et al.

PLoS Genetics, 2014, 10 (5), pp.e1004282. ⟨10.1371/journal.pgen.1004282⟩

Article dans une revue hal-00995097v1

Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome

E. M. Kvikstad , L. Duret

Molecular Biology and Evolution, 2014, 31, pp.23-36. ⟨10.1093/molbev/mst185⟩

Article dans une revue hal-02046828v1

Estimation of the RNU2 macrosatellite mutation rate by BRCA1 mutation tracing

C. Tessereau , Yann Lesecque , N. Monnet , M. Buisson , L. Barjhoux et al.

Nucleic Acids Research, 2014, 42 (14), pp.9121-30. ⟨10.1093/nar/gku639⟩

Article dans une revue hal-02045532v1

XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells

C. Vallot , C. Huret , Yann Lesecque , A. Resch , N. Oudrhiri et al.

Nature Genetics, 2013, 45, pp.239--41. ⟨10.1038/ng.2530⟩

Article dans une revue hal-02446482v1

Eloge de l'ADN poubelle

Laurent Duret , Sylvain Charlat

Pour la science, 2013, 81, pp.10--17

Article dans une revue hal-02140476v1

GC-Biased Gene Conversion in Yeast Is Specifically Associated with Crossovers: Molecular Mechanisms and Evolutionary Significance

Y. Lesecque , D. Mouchiroud , L. Duret

Molecular Biology and Evolution, 2013, 30, pp.1409--19. ⟨10.1093/molbev/mst056⟩

Article dans une revue hal-02281861v1

Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization

Marie Cariou , Laurent Duret , Sylvain Charlat

Ecology and Evolution, 2013, 3 (4), pp.846-852. ⟨10.1002/ece3.512⟩

Article dans une revue hal-02140475v1

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

S. B. Montgomery , D. L. Goode , E. Kvikstad , C. A. Albers , Z. D. Zhang et al.

Genome Research, 2013, 23, pp.749--61. ⟨10.1101/gr.148718.112⟩

Article dans une revue hal-02282687v1

Genome-scale coestimation of species and gene trees.

Bastien Boussau , Gergely J Szöllosi , L. Duret , Manolo Gouy , Eric Tannier et al.

Genome Research, 2013, 23 (2), pp.323-330. ⟨10.1101/gr.141978.112⟩

Article dans une revue hal-00750148v1

The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences.

Olivier Arnaiz , Nathalie Mathy , Céline Baudry , Sophie Malinsky , Jean-Marc Aury et al.

PLoS Genetics, 2012, 8 (10), pp.e1002984. ⟨10.1371/journal.pgen.1002984⟩

Article dans une revue hal-00759182v1

High-quality sequence clustering guided by network topology and multiple alignment likelihood.

Vincent Miele , Simon Penel , Vincent Daubin , Franck Picard , Daniel Kahn et al.

Bioinformatics, 2012, 28 (8), pp.1078-85. ⟨10.1093/bioinformatics/bts098⟩

Article dans une revue hal-00965711v1

Evidence for Widespread GC-biased Gene Conversion in Eukaryotes

Eugénie Pessia , Alexandra Popa , Sylvain Mousset , Clément Rezvoy , Laurent Duret et al.

Genome Biology and Evolution, 2012, 4, pp.787-794. ⟨10.1093/gbe/evs052⟩

Article dans une revue hal-02282748v1

Meiotic recombination favors the spreading of deleterious mutations in human populations

Anamaria Necsulea , L. Duret , Alexandra Popa , David N. Cooper , Peter Stentson et al.

Human Mutation, 2011, 32 (2), pp.198-206. ⟨10.1002/humu.21407⟩

Article dans une revue hal-00610795v1

Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.

Brian P. Cusack , Peter F. Arndt , L. Duret , Hugues Roest Crollius

PLoS Genetics, 2011, 7 (10), pp.e1002276. ⟨10.1371/journal.pgen.1002276⟩

Article dans une revue inserm-00711772v1

Ultra-fast sequence clustering from similarity networks with SiLiX

V. Miele , Simon Penel , L. Duret

BMC Bioinformatics, 2011, 12(116), pp.1-9. ⟨10.1186/1471-2105-12-116⟩

Article dans une revue hal-00698365v1

Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region

Corinne Chureau , Sophie Chantalat , Antonio Romito , Angélique Galvani , Laurent Duret et al.

Human Molecular Genetics, 2011, 20 (4), pp.705-718. ⟨10.1093/hmg/ddq516⟩

Article dans une revue hal-03030487v1

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

Thierry Rouxel , J. Grandaubert , Jk. Hane , Claire Hoede , Angela P. van de Wouw et al.

Nature Communications, 2011, 2, pp.202. ⟨10.1038/ncomms1189⟩

Article dans une revue hal-00841751v1

Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region

C. Chureau , S. Chantalat , A. Romito , A. Galvani , Laurent Duret et al.

Human Molecular Genetics, 2011, 20, pp.705-718. ⟨10.1093/hmg/ddq516⟩

Article dans une revue hal-02299263v1

Detecting positive selection within genomes: the problem of biased gene conversion

A. Ratnakumar , Sylvain Mousset , S. Glémin , J. Berglund , N. Galtier et al.

Philosophical Transactions of the Royal Society B: Biological Sciences, 2010, 365 (1552), pp.2571-2580. ⟨10.1098/rstb.2010.0007⟩

Article dans une revue hal-00539495v1

Paramecium tetraurelia: The Renaissance of an Early Unicellular Model

J. Beisson , M. Bétermier , M-H. Bré , J. Cohen , S. Duharcourt et al.

Emerging Model Organisms, 2010, 2010, pp.1-55

Article dans une revue hal-02305011v1

Paramecium tetraurelia: The Renaissance of an Early Unicellular Model

J. Beisson , M. Bétermier , M.-H. Bré , J. Cohen , S. Duharcourt et al.

Emerging Model Organisms, 2010, 2010(1), pp.1-55

Article dans une revue hal-00539398v1

Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia.

Olivier Arnaiz , Jean-François Goût , Mireille Bétermier , Khaled Bouhouche , Jean Cohen et al.

BMC Genomics, 2010, 11 (1), pp.547. ⟨10.1186/1471-2164-11-547⟩

Article dans une revue inserm-00617225v1

The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution

Jean-François Gout , Daniel Kahn , Laurent Duret

PLoS Genetics, 2010, 6 (5), pp.e1000944. ⟨10.1371/journal.pgen.1000944⟩

Article dans une revue hal-00539474v2

Mutation Patterns in the Human Genome:More Variable Than Expected

L. Duret

PLoS Biology, 2009, 7(2) e1000028, pp.803-806

Article dans une revue hal-00428326v1

Monoallelic expression and tissue specificity are associated with high crossover rates

A. Necşulea , M. Sémon , L. Duret , L.D. Hurst

Trends in Genetics, 2009, 25(12), pp.519-522

Article dans une revue hal-00539368v1

Databases of Homologous Gene Families for Comparative Genomics

Simon Penel , Anne-Muriel Arigon Chifolleau , Jean-François Dufayard , Anne-Sophie Sertier , Vincent Daubin et al.

BMC Bioinformatics, 2009, 10 (Suppl.6) :S3, pp.13. ⟨10.1186/1471-2105-10-S6-S3⟩

Article dans une revue lirmm-00400099v1

Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes

L. Duret , N. Galtier

Annual Review of Genomics and Human Genetics, 2009, 10, pp.285-311

Article dans une revue hal-00428399v1

GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates

N. Galtier , L. Duret , S. Glémin , Vincent Ranwez

Trends in Genetics, 2009, 25(1), pp.1-5

Article dans une revue hal-00428324v1

The relationship between DNA replication and human genome organization.

Anamaria Necsulea , Claire Guillet , Jean-Charles Cadoret , Marie-Noëlle Prioleau , L. Duret

Molecular Biology and Evolution, 2009, 26 (4), pp.729-741. ⟨10.1093/molbev/msn303⟩

Article dans une revue hal-00353551v1

Comment on “Human-Specific Gain of Function in a Developmental Enhancer”

L. Duret , N. Galtier

Science, 2009, 323(5915), pp.714-715

Article dans une revue hal-00428327v1

Differential retention of metabolic genes following whole-genome duplication

Jean-François Gout , Laurent Duret , Daniel Kahn

Molecular Biology and Evolution, 2009, 26 (5), pp.1067-1072. ⟨10.1093/molbev/msp026⟩

Article dans une revue hal-00428358v2

L’évolution des chromosomes sexuels humains

Gabriel Marais , L. Duret

Biofutur, 2009, 304, pp.40-41

Article dans une revue hal-00539330v1

ISG20L2, a novel vertebrate nucleolar exoribonuclease involved in Ribosome biogenesis.

Yohann Couté , Karine Kindbeiter , Stéphane Belin , Régis Dieckmann , L. Duret et al.

Molecular and Cellular Proteomics, 2008, 7, epub ahead of print. ⟨10.1074/mcp.M700510-MCP200⟩

Article dans une revue hal-00196384v1

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

A. Studer , Simon Penel , L. Duret , M. Robinson-Rechavi

Genome Research, 2008, 18, pp.1393-1402

Article dans une revue hal-00428199v1

The Impact of Recombination on Nucleotide Substitutions in the Human Genome

L. Duret , P.F. Arndt

PLoS Genetics, 2008, 4, pp.1-19

Article dans une revue hal-00428172v1

Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.

L. Duret , Jean Cohen , Claire Jubin , Philippe Dessen , Jean-François Goût et al.

Genome Research, 2008, 18 (4), pp.585-96. ⟨10.1101/gr.074534.107⟩

Article dans une revue hal-00282468v1

Translational control of intron splicing in eukaryotes

Olivier Jaillon , Khaled Bouhouche , Jean-François Gout , Jean-Marc Aury , Benjamin Noel et al.

Nature, 2008, 451 (7176), pp.359-362. ⟨10.1038/nature06495⟩

Article dans une revue cea-00945555v1

Genome-wide studies highlight indirect links between human replication origins and gene regulation.

Jean-Charles Cadoret , Françoise Meisch , Vahideh Hassan-Zadeh , Isabelle Luyten , Claire Guillet et al.

Proceedings of the National Academy of Sciences of the United States of America, 2008, 105 (41), pp.15837-42. ⟨10.1073/pnas.0805208105⟩

Article dans une revue hal-00332341v1

Biased Gene Conversion and its Impact on Human Genome Evolution

N. Galtier , L. Duret

incollection, 2008, --, pp.273-277

Article dans une revue hal-00428241v1

Neutral Theory: The Null Hypothesis of Molecular Evolution

L. Duret

Nature Education, 2008, 1 (1), pp.803-806

Article dans une revue hal-00428242v1

Unexpected observations after mapping LongSAGE tags to the human genome

C. Keime , M. Sémon , Dominique Mouchiroud , L. Duret , Olivier Gandrillon

BMC Bioinformatics, 2007, 8, pp.1-11

Article dans une revue hal-00434613v1

Adaptation or biased gene conversion? Extending the null hypothesis of molecular evolution

Nicolas Galtier , L. Duret

Trends in Genetics, 2007, 23 (6), pp.273-277. ⟨10.1016/j.tig.2007.03.011⟩

Article dans une revue istex halsde-00424420v1

Identification and characterization of human Mex-3 proteins, a novel family of evolutionarily conserved RNA-binding proteins differentially localized to processing bodies.

Karine Buchet-Poyau , Julien Courchet , Hervé Le Hir , Bertrand Séraphin , Jean-Yves Scoazec et al.

Nucleic Acids Research, 2007, 35 (4), pp.1289-300. ⟨10.1093/nar/gkm016⟩

Article dans une revue hal-00167447v1

Unexpected observations after mapping LongSAGE tags to the human genome.

Céline Keime , Marie Sémon , Dominique Mouchiroud , Laurent Duret , Olivier Gandrillon

BMC Bioinformatics, 2007, 8, pp.154. ⟨10.1186/1471-2105-8-154⟩

Article dans une revue hal-00193777v1

Insights into social insects from the genome of the honeybee Apis mellifera

G.M. Weinstock , G.E. Robinson , R.A. Gibbs , K.C. Worley , J.D. Evans et al.

Nature, 2006, 443, pp.931-949

Article dans une revue hal-00428044v1

The GC Content of Primates and Rodents Genomes Is Not at Equilibrium : a Reply to Antezana

L. Duret

Journal of Molecular Evolution, 2006, --, pp.803-806

Article dans une revue hal-00427950v1

No Evidence for Tissue-Specific Adaptation of Synonymous Codon Usage in Humans

M. Sémon , J.R. Lobry , L. Duret

Molecular Biology and Evolution, 2006, 23, pp.523-529

Article dans une revue hal-00428013v1

GC Content Evolution of the Human and Mouse Genomes : Insights from the Study of Processed Pseudogenes in Regions of Different Recombination Rates.

A. Khelifi , J. Meunier , L. Duret , Dominique Mouchiroud

Journal of Molecular Evolution, 2006, 62, pp.745-752

Article dans une revue hal-00427980v1

The Xist RNA Gene Evolved in Eutherians by Pseudogenization of a Protein-Coding Gene

L. Duret , C. Chureau , S. Samain , J. Weissenbach , P. Avner

Science, 2006, 312, pp.1653-1655

Article dans une revue hal-00427928v1

Evolutionary origin and maintenance of coexpressed gene clusters in mammals.

M. Sémon , L. Duret

Molecular Biology and Evolution, 2006, 23, pp.1715-1723

Article dans une revue hal-00428012v1

Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia.

Jean-Marc Aury , Olivier Jaillon , L. Duret , Benjamin Noel , Claire Jubin et al.

Nature, 2006, 444 (7116), pp.171-8. ⟨10.1038/nature05230⟩

Article dans une revue hal-00132091v1

A new perspective on isochore evolution

Laurent Duret , Adam Eyre-Walker , Nicolas Galtier

Gene, 2006, 385, pp.71-74. ⟨10.1016/j.gene.2006.04.030⟩

Article dans une revue halsde-00340990v1

Tree pattern matching in phylogenetic trees: automatic search for orthologs or paralogs in homologous gene sequence databases.

Jean-François Dufayard , L. Duret , Simon Penel , Manolo Gouy , F. Rechenmann et al.

Bioinformatics, 2005, 21 (11), pp.2596-603. ⟨10.1093/bioinformatics/bti325⟩

Article dans une revue hal-00427861v1

Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance

M. Sémon , Dominique Mouchiroud , L. Duret

Human Molecular Genetics, 2005, 14, pp.421-427

Article dans une revue hal-00427850v1

Natural history of the ERVWE1 endogenous retroviral locus

B. Bonnaud , J. Beliaeff , O. Bouton , G. Oriol , L. Duret et al.

Retrovirology, 2005, 2, pp.1-7

Article dans une revue hal-00427715v1

Les trésors cachés du génome humain

L. Duret

Pour la science, 2005, --, pp.16-21

Article dans une revue hal-00427745v1

Bioinformatics with a French accent

L.D. Hurst , L. Duret

Genome Biology, 2005, 6, pp.349.1-349.3

Article dans une revue hal-00427767v1

Natural history of the ERVWE 1 endogenous retroviral locus.

Bertrand Bonnaud , Jean Beliaeff , Olivier Bouton , Guy Oriol , Laurent Duret et al.

Retrovirology, 2005, 2:57, pp.1 - 7. ⟨10.1186/1742-4692-2-57⟩

Article dans une revue hal-00021661v1

Homology-dependent methylation in primate repetitive DNA.

J. Meunier , A. Khelifi , V. Navratil , L. Duret

Proceedings of the National Academy of Sciences of the United States of America, 2005, 102 (15), pp.5471-6. ⟨10.1073/pnas.0408986102⟩

Article dans une revue hal-00427789v1

HOPPSIGEN: a database of human and mouse processed pseudogenes.

A. Khelifi , L. Duret , Dominique Mouchiroud

Nucleic Acids Research, 2005, 33 (Database issue), pp.D59-66. ⟨10.1093/nar/gki084⟩

Article dans une revue hal-00427774v1

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes.

P. Kersey , L. Bower , L. Morris , A. Horne , R. Petryszak et al.

Nucleic Acids Research, 2005, 33 (Database issue), pp.D297-302. ⟨10.1093/nar/gki039⟩

Article dans une revue hal-00427773v1

Polymorphix: a sequence polymorphism database

E. Bazin , L. Duret , Simon Penel , N. Galtier

Nucleic Acids Research, 2005, 33, pp.481-484

Article dans une revue hal-00427707v1

The endogenous retroviral locus ERVWE1 is a bona fide gene involved in hominoid placental physiology

Frédéric Mallet , O. Bouton , S. Prudhomme , V. Cheynet , G. Oriol et al.

Proceedings of the National Academy of Sciences of the United States of America, 2004, 101, pp.1731-1736

Article dans une revue hal-00427686v1

The Decline of Isochores in Mammals: An Assessment of the GC Content Variation Along the Mammalian Phylogeny

E. Belle , L. Duret , N. Galtier , A. Eyre-Walker

Journal of Molecular Evolution, 2004, 58, pp.653-660

Article dans une revue hal-00427539v1

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.

Céline Keime , Francesca Damiola , Dominique Mouchiroud , Laurent Duret , Olivier Gandrillon

BMC Bioinformatics, 2004, 5, pp.143. ⟨10.1186/1471-2105-5-143⟩

Article dans une revue hal-00193784v1

Evidence that functional transcription units cover at least half of the human genome

M. Sémon , L. Duret

Trends in Genetics, 2004, 20, pp.229-232

Article dans une revue hal-00427647v1

Physical and transcript map of the autosomal dominant colobomatous microphthalmia locus on chromosome 15q12-q15 and refinement to a 4.4 Mb region.

Laetitia Michon , Laurette Morlé , Muriel Bozon , L. Duret , Jean-Christophe Zech et al.

European Journal of Human Genetics, 2004, 12 (7), pp.574-8. ⟨10.1038/sj.ejhg.5201197⟩

Article dans une revue hal-00425119v1

Grid as a bioinformatic tool

N. Jacq , Christophe Blanchet , C. Combet , E. Cornillot , L. Duret et al.

Parallel Computing, 2004, 30, pp.1093-1107. ⟨10.1016/j.parco.2004.07.013⟩

Article dans une revue in2p3-00023218v1

Recombination drives the evolution of GC-content in the human genome

J. Meunier , L. Duret

Molecular Biology and Evolution, 2004, 21, pp.984-990

Article dans une revue hal-00427624v1

Evidence of Selection on the Domesticated ERVWE1 env Retroviral Element Involved in Placentation

B. Bonnaud , O. Bouton , G. Oriol , V. Cheynet , L. Duret et al.

Molecular Biology and Evolution, 2004, 21, pp.1895-1901

Article dans une revue hal-00427546v1

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries.

C. Keime , F. Damiola , D. Mouchiroud , L. Duret , O. Gandrillon

BMC Bioinformatics, 2004, 5, pp.143

Article dans une revue hal-00124096v1

Identitag a relational database for SAGE tag identification and interspecies comparison of SAGE libraries

C. Keime , F. Damiola , Dominique Mouchiroud , L. Duret , Olivier Gandrillon

BMC Bioinformatics, 2004, 5, pp.1-12

Article dans une revue hal-00427517v1

ROSO : Research on Optimized Oligonucleotide Probes for Microarrays

N. Reymond , H. Charles , L. Duret , Federica Calevro , G. Beslon et al.

Bioinformatics, 2004, 20, pp.271-273

Article dans une revue hal-00427641v1

Grid as a bioinformatic tool

N. Jacq , Christophe Blanchet , C. Combet , E. Cornillot , L. Duret et al.

Parallel Computing, 2004, 30, pp.1093-1107

Article dans une revue hal-00427599v1

Grid as a bioinformatic tool

N. Jacq , Christophe Blanchet , C. Combet , E. Cornillot , L. Duret et al.

Parallel Computing, 2004, 30, pp.1093-1107

Article dans une revue hal-00314551v1

Physical and transcript map of the autosomal dominant colobomatous microphthalmia locus on chromosome 15q12-q15 and refinement to a 4.4 Mb region.

Laurent Michon , L. Morle , M. Bozon , L. Duret , Zech J. C. et al.

European Journal of Human Genetics, 2004, 12, pp.574-578

Article dans une revue hal-00161402v1

Neutral effect of recombination on base composition in Drosophila

Gabriel Marais , Dominique Mouchiroud , L. Duret

Genetical Research, 2003, 81, pp.79-89

Article dans une revue hal-00427447v1

Placenta-Specific INSL4 Expression Is Mediated by a Human Endogenous Retrovirus Element

I. Bièche , A. Laurent , I. Laurendeau , L. Duret , Y. Giovangrandi et al.

Biology of Reproduction, 2003, 68, pp.1422-1429

Article dans une revue hal-00427363v1

Patterns of selection against transposons inferred from the distribution of Tc1, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

Carène Rizzon , Edwige Martin , Gabriel Marais , Laurent Duret , Laurent Ségalat et al.

Genetics, 2003, 165 (3), pp.1127-35

Article dans une revue hal-00194461v1

Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

O. Assossou , F. Besson , J.P. Rouault , F. Persat , C. Brisson et al.

FEMS Microbiology Letters, 2003, 224, pp.161-168. ⟨10.1016/S0378-1097(03)00479-8⟩

Article dans une revue istex hal-00427496v1

Integrated databanks access and sequence/structure analysis services at the PBIL.

G. Perriere , C. Combet , Simon Penel , Christophe Blanchet , J. Thioulouse et al.

Nucleic Acids Research, 2003, 31 (13), pp.3393-3399. ⟨10.1093/nar/gkg530⟩

Article dans une revue hal-00313743v1

Patterns of selection against transposons inferred from the distribution of Tcl, Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans.

C. Rizzon , E. Martin , G. Marais , L. Duret , L. Segalat et al.

Genetics, 2003, 165, pp.1127-1135

Article dans une revue hal-00144031v1

Patterns of selection against transposons inferred from the distribution of Tc1 Tc3 and Tc5 insertions in the mut-7 line of the nematode Caenorhabditis elegans

C. Rizzon , E. Martin , Gabriel Marais , L. Duret , L. Segalat et al.

Genetics, 2003, 165, pp.1127-1135

Article dans une revue hal-00427476v1

Subcellular localization of 14-3-3 proteins in Toxoplasma gondii tachyzoites and evidence for a lipid raft-associated form

Jean-Pierre Rouault , Olga Assossou , Franã§oise Besson , Florence Persat , Christine Brisson et al.

FEMS Microbiology Letters, 2003, 224 (2), pp.161-168. ⟨10.1016/S0378-1097(03)00479-8⟩

Article dans une revue istex hal-02998536v1

Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores

G. Piganeau , Dominique Mouchiroud , L. Duret , Christian Gautier

Journal of Molecular Evolution, 2002, 54, pp.129-133

Article dans une revue hal-00427292v1

Vanishing GC-Rich Isochores in Mammalian Genomes

L. Duret , M. Sémon , G. Piganeau , Dominique Mouchiroud , N. Galtier

Genetics, 2002, 162, pp.1837-1848

Article dans une revue hal-00427269v1

Comparative sequence analysis of the X-inactivation center region in mouse human and bovine

C. Chureau , M. Prissette , A. Bourdet , Valérie Barbe , Laurence Cattolico et al.

Genome Research, 2002, 12, pp.894-908

Article dans une revue hal-00427257v1

Evolution of synonymous codon usage in metazoans

L. Duret

Current Opinion in Genetics and Development, 2002, 12, pp.640-649

Article dans une revue hal-00427267v1

Detecting genomic features under weak selective pressure: the example of codon usage in animals and plants

L. Duret

Bioinformatics, 2002, 18, pp.S91-S91

Article dans une revue hal-00427268v1

Organisation Fonctionnement et Evolution des Génomes de Métazoaires : Mais où est donc passée la sélection naturelle ?

L. Duret

incollection, 2001, --, pp.287-289

Article dans une revue hal-00427170v1

Why do genes have introns? Recombination might add a new piece to the puzzle

L. Duret

Trends in Genetics, 2001, 17, pp.172-175

Article dans une revue hal-00427168v1

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

Gabriel Marais , Dominique Mouchiroud , L. Duret

Proceedings of the National Academy of Sciences of the United States of America, 2001, 98, pp.5688-5692

Article dans une revue hal-00427184v1

Determinants of CpG islands: expression in early embryo and isochore structure

L. Ponger , L. Duret , Dominique Mouchiroud

Genome Research, 2001, 11, pp.1854-1860

Article dans une revue hal-00427189v1

The elevated GC content at exonic third sites is not evidence against neutralist models of isochore evolution

L. Duret , L.D. Hurst

Molecular Biology and Evolution, 2001, 18, pp.757-762

Article dans une revue hal-00427169v1

Synonymous codon usage accuracy of translation and gene length in Caenorhabditis elegans

Gabriel Marais , L. Duret

Journal of Molecular Evolution, 2001, 52, pp.275-280

Article dans une revue hal-00427183v1

Plant Physiol.A Medicago truncatula homoglutathione synthetase is derived from glutathione synthetase by gene duplication

P. Frendo , M.J. Jimenez , C. Mathieu , L. Duret , D. Gallesi et al.

Plant Physiology, 2001, 126, pp.1706-1715

Article dans une revue hal-00427171v1

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis

N. Galtier , G. Piganeau , Dominique Mouchiroud , L. Duret

Genetics, 2001, 159, pp.907-911

Article dans une revue hal-00427173v1

tRNA gene number and codon usage in the C. elegans genome are co-adapted for optimal translation of highly expressed genes

L. Duret

Trends in Genetics, 2000, 16, pp.287-289

Article dans une revue hal-00427076v1

Identification and molecular analysis of BANP

Anne-Marie Birot , Laurent Duret , Laurent Bartholin , Bénédicte Santalucia , Isabelle Tigaud et al.

Gene, 2000, 253 (2), pp.189-196. ⟨10.1016/S0378-1119(00)00244-4⟩

Article dans une revue istex hal-02998585v1

The covariation between TpA deficiency CpG deficiency and G+C content of human isochores is due to a mathematical artifact

L. Duret , N. Galtier

Molecular Biology and Evolution, 2000, 17, pp.1620-1625

Article dans une revue hal-00427077v1

HOBACGEN: database system for comparative genomics in bacteria

G. Perrière , L. Duret , Manolo Gouy

Genome Research, 2000, 10, pp.379-385. ⟨10.1101/gr.10.3.379⟩

Article dans une revue hal-00427099v1

Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans

L. Duret , Gabriel Marais , C. Biémont

Genetics, 2000, 156, pp.1661-1669

Article dans une revue hal-00427072v1

Chromosomal distribution and coding capacity of the human endogenous retrovirus HERV-W family

C. Voisset , O. Bouton , F. Bedin , L. Duret , B. Mandrand et al.

AIDS Research and Human Retroviruses, 2000, 16, pp.731-740

Article dans une revue hal-00427112v1

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

L. Duret , Dominique Mouchiroud

Molecular Biology and Evolution, 2000, 17, pp.68-74

Article dans une revue hal-00427068v1

Nature and structure of human genes that generate retropseudogenes

I. Goncalves , L. Duret , Dominique Mouchiroud

Genome Research, 2000, 10, pp.672-678

Article dans une revue hal-00427085v1

Use of a TT virus ORF1 recombinant protein to detect anti-TT virus antibodies in human sera

C. Ott , L. Duret , I. Chemin , C. Trepo , B. Mandrand et al.

Journal of General Virology, 2000, 81, pp.2949-2958

Article dans une revue hal-00427092v1

Multiple alignments for structural functional or phylogenetic analyses of homologous sequences

L. Duret , S. Abdeddaim

incollection, 2000, --, pp.51-76

Article dans une revue hal-00427048v1

Expression pattern and surprisingly gene length shape codon usage in Caenorhabditis Drosophila and Arabidopsis

L. Duret , Dominique Mouchiroud

Proceedings of the National Academy of Sciences of the United States of America, 1999, 96, pp.4482-4487

Article dans une revue hal-00428427v1

Regulation of dauer larva development in Caenorhabditis elegans by daf-18, a homologue of the tumour suppressor PTEN

Jean-Pierre Rouault , Patricia Kuwabara , Olga Sinilnikova , Laurent Duret , Danielle Thierry-Mieg et al.

Current Biology, 1999, 9 (6), pp.329-334. ⟨10.1016/S0960-9822(99)80143-2⟩

Article dans une revue hal-02998593v1

Molecular characterization and placental expression of HERV-W a new human endogenous retrovirus family

J.L. Blond , F. Beseme , L. Duret , O. Bouton , F. Bedin et al.

Journal of Virology, 1999, 73, pp.1175-1185

Article dans une revue hal-00428437v1

Human and nematode orthologs--lessons from the analysis of 1800 human genes and the proteome of Caenorhabditis elegans

S.J. Wheelan , M.S. Boguski , L. Duret , W. Makalowski

Gene, 1999, 238, pp.163-170

Article dans une revue hal-00428467v1

New insulin-like proteins with atypical disulfide bond pattern characterized in Caenorhabditis elegans by comparative sequence analysis and homology modeling

L. Duret , N. Guex , M.C. Peitsch , A. Bairoch

Genome Research, 1998, 8, pp.348-353

Article dans une revue hal-00428485v1

Highly conserved RNA sequences that are sensors of environmental stress

A. Spicher , O.M. Guicherit , L. Duret , A. Aslanian , E.M. Sanjines et al.

Molecular and Cellular Biology, 1998, 18, pp.7371-7382

Article dans une revue hal-00428502v1

Evolutionary affinities of the order Perissodactyla and the phylogenetic status of the superordinal taxa Ungulata and Altungulata

D. Graur , Manolo Gouy , L. Duret

Molecular Phylogenetics and Evolution, 1997, 7 (2), pp.195-200. ⟨10.1006/mpev.1996.0391⟩

Article dans une revue istex hal-00434984v1

Cloning and characterization of a gene encoding a novel immunodominant antigen of Trypanosoma cruzi

M. Lesenechal , L. Duret , M.I. Cano , R.A. Mortara , M. Jolivet et al.

Molecular and Biochemical Parasitology, 1997, 87, pp.193-204

Article dans une revue hal-00434988v1

Cloning of the mouse BTG3 gene and definition of a new gene family (the BTG family) involved in the negative control of the cell cycle

F Guéhenneux , L. Duret , Mb Callanan , R Bouhas , S Hayette et al.

Leukemia, 1997, 11 (3), pp.370-375. ⟨10.1038/sj.leu.2400599⟩

Article dans une revue hal-02998613v1

Searching for regulatory elements in human noncoding sequences

L. Duret , P. Bucher

Current Opinion in Structural Biology, 1997, 7, pp.399-406

Article dans une revue hal-00434977v1

Phylogenetic position of the order Lagomorpha (rabbits hares and allies)

D. Graur , L. Duret , Manolo Gouy

Nature, 1996, 379, pp.333-335. ⟨10.1038/379333a0⟩

Article dans une revue istex hal-00435019v1

LALNVIEW: a graphical viewer for pairwise sequence alignments

L. Duret , E. Gasteiger , G. Perrière

Computer Applications in the Biosciences, 1996, 12, pp.507-510

Article dans une revue hal-00435026v1

Isolation and characterization of a cDNA encoding a chicken actin-like protein

J.J. Michaille , Manolo Gouy , Simon Blanchet , L. Duret

Gene, 1995, 154 (2), pp.205-209. ⟨10.1016/0378-1119(94)00865-P⟩

Article dans une revue istex hal-00698055v1

Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores

L. Duret , Dominique Mouchiroud , Christian Gautier

Journal of Molecular Evolution, 1995, 40, pp.308-317

Article dans une revue hal-00698070v1

HOVERGEN: a database of homologous vertebrate genes

L. Duret , Dominique Mouchiroud , Manolo Gouy

Nucleic Acids Research, 1994, 22 (12), pp.2360-2365. ⟨10.1093/nar/22.12.2360⟩

Article dans une revue hal-00698069v1

Rearrangement of CCND1 (BCL1/PRAD1) 3' untranslated region in mantle-cell lymphomas and t(11q13)-associated leukemias

R. Rimokh , F. Berger , C. Bastard , B. Klein , M. French et al.

Blood, 1994, 83, pp.3689-3696

Article dans une revue hal-00698183v1

Sequence analysis reveals that the BTG1 anti-proliferative gene is conserved throughout evolution in its coding and 3' non-coding regions

Jean-Pierre Rouault , J.P. Rouault , C. Samarut , L. Duret , C. Tessa et al.

Gene, 1993, 129 (2), pp.303-306. ⟨10.1016/0378-1119(93)90284-A⟩

Article dans une revue istex hal-02998651v1

BTG1, a member of a new family of antiproliferative genes.

Jean-Pierre Rouault , R. Rimokh , C. Tessa , G. Paranhos , M. Ffrench et al.

EMBO Journal, 1992, 11 (4), pp.1663-1670. ⟨10.1002/j.1460-2075.1992.tb05213.x⟩

Article dans une revue hal-02998663v1

Modélisation des systèmes biologiques, bioinformatique

Olivier Gascuel , P. Benas , C. Brun , D. Burnouf , Alexandre de Brevern et al.

Rapport de conjoncture 2010 du Comité national de la recherche scientifique, CNRS Editions, chapitre 43, 845-858, 2011, 978-2-271-07263-4

Chapitre d'ouvrage hal-00799641v1

Evolution Moléculaire

L. Duret , T. Bataillon , N. Bierne , Vincent Daubin , J. Dutheil et al.

sous la direction de Frédéric Thomas; Thierry Lefèvre; Michel Raymond. Biologie évolutive, De Boeck, pp.114-173, 2010, 978-2-8041-0161-9

Chapitre d'ouvrage hal-00539271v1

HOVERGEN: comparative analysis of homologous vertebrate genes

L. Duret , G. Perrière , Manolo Gouy

Letovsky S. Bioinformatics: databases and systems, Springer, pp.21-35, 1999, 978-0-7923-8573-8. ⟨10.1007/0-306-46903-0_3⟩

Chapitre d'ouvrage hal-00428428v1

Chargement...

Laurent Duret

Publications

Publications

Why recombination hotspots?

The tiny germline chromosomes of Paramecium aurelia have an exceptionally high recombination rate and are capped by a new class of Helitrons

PRDM9 drives the location and rapid evolution of recombination hotspots in salmonids fish

Variation in the fitness impact of translationally optimal codons among animals

Random genetic drift sets an upper limit on mRNA splicing accuracy in metazoans

High prevalence of PRDM9-independent recombination hotspots in placental mammals

GTDrift: a resource for exploring the interplay between genetic drift, genomic and transcriptomic characteristics in eukaryotes

Bridging the gap between the evolutionary dynamics and the molecular mechanisms of meiosis : a model based exploration of the PRDM9 intra-genomic Red Queen

Population designations in biomedical research: limitations and perspectives

DILS: Demographic inferences with linked selection by using ABC

Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes

How consistent is RAD‐seq divergence with DNA‐barcode based clustering in insects?

Evolutionary plasticity of mating-type determination mechanisms in Paramecium aurelia sibling species

Population genomics supports clonal reproduction and multiple independent gains and losses of parasitic abilities in the most devastating nematode pest

Bedrock radioactivity influences the rate and spectrum of mutation

Global survey of mobile DNA horizontal transfer in arthropods reveals Lepidoptera as a prime hotspot

GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes

Evolution of replication origins in vertebrate genomes: rapid turnover despite selective constraints

Unbiased Estimate of Synonymous and Nonsynonymous Substitution Rates with Nonstationary Base Composition

Life History Traits Impact the Nuclear Rate of Substitution but Not the Mitochondrial Rate in Isopods

Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion

PRDM9 Methyltransferase Activity Is Essential for Meiotic DNA Double-Strand Break Formation at Its Binding Sites

The Red Queen model of recombination hot-spot evolution: a theoretical investigation

In vivo binding of PRDM9 reveals interactions with noncanonical genomic sites

Recombination, meiotic expression and human codon usage

Less effective selection leads to larger genomes

The fitness cost of mis-splicing is the main determinant of alternative splicing patterns

The global impact of Wolbachia on mitochondrial diversity and evolution

How and how much does RAD-seq bias genetic diversity estimates?

No Evidence That Nitrogen Limitation Influences the Elemental Composition of Isopod Transcriptomes and Proteomes

Quantification of GC-biased gene conversion in the human genome

GC-Content evolution in bacterial genomes: The biased gene conversion hypothesis expands

Occurrence of a non deleterious gene conversion event in the BRCA1 gene

Optimization of multiplexed RADseq libraries using low-cost adaptors

The Red Queen Model of Recombination Hotspots Evolution in the Light of Archaic and Modern Human Genomes

Comparative population genomics in animals uncovers the determinants of genetic diversity

The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.

Strong heterogeneity in mutation rate causes misleading hallmarks of natural selection on indel mutations in the human genome

Estimation of the RNU2 macrosatellite mutation rate by BRCA1 mutation tracing

XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells

Eloge de l'ADN poubelle

GC-Biased Gene Conversion in Yeast Is Specifically Associated with Crossovers: Molecular Mechanisms and Evolutionary Significance

Is RAD-seq suitable for phylogenetic inference? An in silico assessment and optimization

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes

Genome-scale coestimation of species and gene trees.

The Paramecium Germline Genome Provides a Niche for Intragenic Parasitic DNA: Evolutionary Dynamics of Internal Eliminated Sequences.

High-quality sequence clustering guided by network topology and multiple alignment likelihood.

Evidence for Widespread GC-biased Gene Conversion in Eukaryotes

Meiotic recombination favors the spreading of deleterious mutations in human populations

Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.

Ultra-fast sequence clustering from similarity networks with SiLiX

Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region

Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations

Ftx is a non-coding RNA which affects Xist expression and chromatin structure within the X-inactivation center region

Detecting positive selection within genomes: the problem of biased gene conversion

Paramecium tetraurelia: The Renaissance of an Early Unicellular Model

<i>Paramecium tetraurelia:</i> The Renaissance of an Early Unicellular Model

Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia.

The relationship among gene expression, the evolution of gene dosage, and the rate of protein evolution

Mutation Patterns in the Human Genome:More Variable Than Expected

Monoallelic expression and tissue specificity are associated with high crossover rates

Databases of Homologous Gene Families for Comparative Genomics

Biased Gene Conversion and the Evolution of Mammalian Genomic Landscapes

GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates

The relationship between DNA replication and human genome organization.

Comment on “Human-Specific Gain of Function in a Developmental Enhancer”

Differential retention of metabolic genes following whole-genome duplication

L’évolution des chromosomes sexuels humains

ISG20L2, a novel vertebrate nucleolar exoribonuclease involved in Ribosome biogenesis.

Pervasive positive selection on duplicated and nonduplicated vertebrate protein coding genes

The Impact of Recombination on Nucleotide Substitutions in the Human Genome

Analysis of sequence variability in the macronuclear DNA of Paramecium tetraurelia: a somatic view of the germline.

Translational control of intron splicing in eukaryotes

Genome-wide studies highlight indirect links between human replication origins and gene regulation.

Biased Gene Conversion and its Impact on Human Genome Evolution

Neutral Theory: The Null Hypothesis of Molecular Evolution

Unexpected observations after mapping LongSAGE tags to the human genome