Ludovic Cottret
Publications
Publications
Microbiota-Host interactions during juvenile growth: exploration of interconnected metabolic networksNMR metabolomics symposium, Jun 2025, Nantes (France), France |
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MULTI-ORGAN GENOME-SCALE METABOLIC MODELING OF A TOMATO PLANT AT VEGETATIVE GROWTH STAGE13ème Congrès international de la SFBV, Société Française de la Biologie Végétale, Aug 2022, Montpellier, France |
Investigation of the metabolic network of Xylella fastidiosa responsible of its fastidious growth3rd European Conference on Xylella fastidiosa and the final meeting of the XF-ACTORS project, Apr 2021, Virtual, France |
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Multi-organ genome-scale metabolic modeling of tomato plant7th Conference on Constraint-Based Reconstruction and Analysis (COBRA 2021), Mar 2021, Virtual, France |
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Learning Boolean controls in regulated metabolic networks: a case-studyCMSB 2021 - 19th International Conference on Computational Methods in Systems Biology, 2021, Bordeaux, France. pp.159-180, ⟨10.1007/978-3-030-85633-5_10⟩ |
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Exploration of the growth-virulence trade-off in the plant pathogen Ralstonia solanacearum species complexMicrobiOccitanie 2019 - Rencontre des Microbiologistes Région Occitanie, Feb 2019, Montpellier, France |
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Genome-scale investigation of the metabolic determinants generating bacterial fastidious growthSymposium on Synthetic and Systemic Biology, Nov 2019, Bordeaux, France |
Phylogenetic and Phylogenomic Approaches to Decipher the Evolution of the Nitrogen Fixing Root Nodule Symbiosis18th Congress of International-Society-for-Molecular-Plant-Microbe-Interactions (IS-MPMI), International Society for Molecular Plant-Microbe Interactions, Jul 2019, Glasgow, United Kingdom. pp.13-13 |
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Visualization of time-series data in the context of metabolic networks with Systrip SoftwareJournées Ouvertes Biologie Informatique Mathématiques (JOBIM 2013), Jul 2013, France |
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Systrip: a visual environment for the investigation of time-series data in the context of metabolic networks16th International Conference on Information Visualization (IV'12), Jul 2012, Montpellier, France. pp.4771a204 |
Réévaluation génomique de la fonction de transport chez Buchnera, endocytobiote des pucerons : une faible diversité de transporteurs et une organisation membranaire variable4. Réunion Réseau Français de Biologie Adaptative des Pucerons et Organismes Associés, Réseau Biologie Adaptative des Pucerons et des Organismes Associés (BAPOA). FRA., Nov 2011, Paris, France |
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Initial metabolic reconstruction of Klebsiella pneumoniae Kp13, a multidrug resistant pathogen involved in nosocomial outbreaks in BrazilX-meeting, 2011, Florianópolis, Brazil |
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Absence of a core metabolic network common to symbiotic bacteria6. Meeting GDRE-RA Comparative genomics, Nov 2011, Lyon, France. 33 diapositives |
Telling StoriesICALP 2011 satellite workshop: Graph Algorithms and Applications (GA), 2011, Zurich, Switzerland. ⟨10.1016/j.tcs.2012.07.023⟩ |
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Metabolic network comparison of bacteria in the context of symbiosisOtto Warburg International Summer School and Research Symposium on Evolutionary Genomics, 2011, Berlin, Germany |
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The Acyrthosiphon pisum Cyc database (AcypiCyc) created using a novel BioCyc Annotation Database System (CycADS): a useful tool to explore and study the pea aphid metabolism5th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 2, Barcelona, Espagne, juin 2009, Jun 2009, France |
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AcypiCyc (Acyrthosiphon pisum Cyc database) and CycADS (Cyc Annotation Database System): moving from genome sequence annotation to metabolic network analyses8th International Symposium on Aphids (8 ISA 2009), 2009, Catania (Italie), juin 2009, France. pp.1-1 |
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AcypiCyc (Acyrthosiphon pisum Cyc database) : a model database to visualize and study the metabolic network underlying the pea aphid-Buchnera symbiosis6. International Symbiosis Society (ISS) Congress, 2009, Madison, août 2009, United States |
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CycADS: an annotation management system for the development and update of BioCyc metabolic network databases1st International Workshop on Information Systems for Insect Pests, Rennes, FRANCE, 2009, France |
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AcypiCyc (Acyrthosiphon pisumCyc database) and CycADS (CycAnnotation Database System) : moving from genome sequence annotation to metabolic network analysesRéseau Français de Biologie Adaptative des Pucerons, 2009, Paris, juin 2009, France |
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AcypiCyc (Acyrthosiphon pisumCyc database) and CycADS (CycAnnotation Database System) : moving from genome sequence annotation to metabolic network analyses8. International Symposium on Aphids (8 ISA 2009), 2009, Catania, juin 2009, Italy |
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Annotation of metabolism genes: towads the implementation of an Acyrthosiphon pisum Cyc database (ApsCyc) to perform metabolic network analyses4th Meeting of the International Aphid Genomics Consortium "Pea Aphid Genome Annotation Workshop 1", 2008, Princetown (USA), juillet 2008, France. pp.1-1 |
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Development of the Acyrthosiphon pisum Cyc database (ApsCyc): from genome sequence to metabolic network analysesIntegrative Post-Genomics - IPG'08, 2008, Lyon (France), novembre 2008, France. pp.1-1 |
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Development of the Acyrthosiphon pisum Cyc database (ApsCyc) : from genome sequence to metabolic network analysesIntegrative Post-Genomics - IPG'08, 2008, Lyon, novembre 2008, France |
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Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisumSéminaire INRA AgroBI, 2008, Bordeaux, décembre 2008, France |
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Metabolic network reconstruction from genomic annotationsFirst Systryp meeting, 2008, Glasgow (UK), juin 2008, France. pp.1-1 |
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Caractérisation et modélisation de la « fonction symbiotique » de Buchnera aphidicola chez le puceron du pois Acyrthosiphon pisumSéminaire INRA AgroBI, 2008, Bordeaux (France), décembre 2008, France. pp.1-1 |
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Interactions trophiques dans la symbiose puceron - Buchnera : Régulations transcriptionnelles de la réponse à la carence en acides aminés essentielsRéseau Français de Biologie Adaptative des Pucerons, 2008, Paris (France), janvier 2008, France. pp.1-1 |
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Enumerating precursor sets of target metabolites in a metabolic networkWABI 2008 - 8th International Workshop on Algorithms in Bioinformatics, Sep 2008, Karlsruhe, Germany. pp.233-244 |
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SymBioCyc: Metabolic data on endosymbiotic, parasitic and free bacteriaIntegrative Post-Genomics - IPG'07, 2007, Lyon (France), novembre 2007, France. pp.1-1 |
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Regulation of expression following nutritional stresses in the reduced genome of Buchnera aphidicola, "Is there any life left?Seminarios del Institut Cavanilles de Biodiversitat i Biologia Evolutiva (ICBiBE) - Univ. Valencia (ESP), 2007, Valencia (Espagne), juin 2007, France. pp.1-1 |
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Enumerating precursor sets of target metabolites in a metabolic network8th Workshop on Algorithms in Bioinformatics (WABI), 2007, Karlsruhe (Allemagne), septembre 2008, France. pp.233-244 |
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Recherche de précurseurs dans un réseau métaboliqueRéseaux d'interaction : analyse, modélisation et simulation (RIAMS), 2007, Villeurbanne (France), novembre 2007, France. pp.1-1 |
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Régulation génétique et métabolique chez Buchnera aphidicola (AgroBi 2006)Journée INRA-INRIA "Insertion des mathématiques dans les approches biologiques : du gène à l'organisme", 2006, Lyon (France), décembre 2006, France. pp.1-1 |
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Unlocking the Microbiome-Metabolome Nexus for Innovative One-Health Solution2026 |
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Rhizobium leguminosarum symbiovar viciae strains are natural wheat endophytes and can stimulate root development and colonization by arbuscular mycorrhizal fungi2020 |
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Family-Companion: analyse, visualise, browse, query and share your homology clusters2018 |
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Analyse systémique de la symbiose intracellulaire : évolution et organisation du réseau métabolique des endocytobiotes.Sciences du Vivant [q-bio]. Université Claude Bernard - Lyon I, 2009. Français. ⟨NNT : ⟩ |