sophie lemoine

39
Documents
Affiliation actuelle
  • GenomiqueENS (Genomique ENS)
Contact

Domaines de recherche

Génomique, Transcriptomique et Protéomique [q-bio.GN]

Compétences

Analyse de données RNASeq (lectures courtes Illumina) Analyse de Single Cell RNASeq en lectures courtes Analyse de Single Cell RNASeq en lectures longues (ONT) Analyse de Single Cell RNASeq en lectures courtes

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Publications

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An AluYa5 Insertion in the 3'UTR of COL4A1 and Cerebral Small Vessel Disease

Chaker Aloui , Lisa Neumann , Françoise Bergametti , Eric Sartori , Marc Herbreteau et al.
JAMA Network Open, 2024, 7 (4), pp.e247034. ⟨10.1001/jamanetworkopen.2024.7034⟩
Article dans une revue hal-04563144 v1
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Blood Monocyte Phenotype Is A Marker of Cardiovascular Risk in Type 2 Diabetes

Jean-Baptiste Julla , Diane Girard , Marc Diedisheim , Pierre-Jean Saulnier , Bao Tran Vuong et al.
Circulation Research, 2024, 134 (2), pp.189-202. ⟨10.1161/circresaha.123.322757⟩
Article dans une revue hal-04534577 v1

Comparative transcriptome analysis of goat (Capra hircus) adipose tissue reveals physiological regulation of body reserve recovery after the peak of lactation

Yannick Faulconnier , Céline Boby , Fanny Coulpier , Sophie Lemoine , Patrice Martin et al.
Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2022, 41, pp.100956. ⟨10.1016/j.cbd.2021.100956⟩
Article dans une revue hal-03524137 v1

A unique cerebellar pattern of microglia activation in a mouse model of encephalopathy of prematurity

Luisa Klein , Juliette van Steenwinckel , Bobbi Fleiss , Till Scheuer , Christoph Bührer et al.
Glia, 2022, 70 (9), pp.1699-1719. ⟨10.1002/glia.24190⟩
Article dans une revue hal-04326421 v1
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Early macrophage response to obesity encompasses Interferon Regulatory Factor 5 regulated mitochondrial architecture remodelling

L. Orliaguet , T. Ejlalmanesh , A. Humbert , R. Ballaire , M. Diedisheim et al.
Nature Communications, 2022, 13 (1), pp.5089. ⟨10.1038/s41467-022-32813-z⟩
Article dans une revue hal-03770463 v1
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The tumor microenvironment impairs Th1 IFNγ secretion through alternative splicing modifications of Irf1 pre-mRNA

Antoine Bernard , Christophe Hibos , Corentin Richard , Etienne Viltard , Sandy Chevrier et al.
Cancer Immunology Research, 2021, 9 (3), pp.324-336. ⟨10.1158/2326-6066.CIR-19-0679⟩
Article dans une revue hal-03834196 v1
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Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection

Nguyen-Quang Nam , Sophie Goudey , Emmanuel Segeral , Ammara Mohammad , Sophie Lemoine et al.
Retrovirology, 2020, 17, pp.25. ⟨10.1186/s12977-020-00533-1⟩
Article dans une revue hal-02953802 v1
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Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling by upregulating ATP binding cassette subfamily G member 1

Serena Barilla , Ning Liang , Enrichetta Mileti , Raphaëlle Ballaire , Marie Lhomme et al.
Molecular metabolism, 2020, 42, pp.101066. ⟨10.1016/j.molmet.2020.101066⟩
Article dans une revue hal-02967944 v1
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Adipocyte Reprogramming by the Transcriptional Coregulator GPS2 Impacts Beta Cell Insulin Secretion

Karima Drareni , Raphaëlle Ballaire , Fawaz Alzaid , Andreia Goncalves , Catherine Chollet et al.
Cell Reports, 2020, 32, pp.108141 -. ⟨10.1016/j.celrep.2020.108141⟩
Article dans une revue hal-03491495 v1
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Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination

Anne-Sophie Fiorucci , Clara Bourbousse , Lorenzo Concia , Martin Rougée , Anne-Flore Deton-Cabanillas et al.
Genome Biology, 2019, 20 (100), ⟨10.1186/s13059-019-1705-4⟩
Article dans une revue hal-02156634 v1
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Molecular characterisation of a cellular conveyor belt in Clytia medusae

Thomas Condamine , Muriel Jager , Lucas Leclère , Corinne Blugeon , Sophie Lemoine et al.
Developmental Biology, 2019, 456 (2), pp.212-225. ⟨10.1016/j.ydbio.2019.09.001⟩
Article dans une revue hal-02381895 v1
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Active Fluctuations of the Nuclear Envelope Shape the Transcriptional Dynamics in Oocytes

Maria Almonacid , Adel Al Jord , Stephany El-Hayek , Alice Othmani , Fanny Coulpier et al.
Developmental Cell, 2019, 51 (2), pp.145-157.e10. ⟨10.1016/j.devcel.2019.09.010⟩
Article dans une revue hal-03003444 v1

Zinc Uptake and Storage During the Formation of the Cerebral Cortex in Mice

Jessy Hasna , Sylvain Bohic , Sophie Lemoine , Corinne Blugeon , Alexandre Bouron
Molecular Neurobiology, 2019, 56 (10), pp.6928-6940. ⟨10.1007/s12035-019-1581-7⟩
Article dans une revue hal-02090330 v1
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Cellular Origin, Tumor Progression, and Pathogenic Mechanisms of Cutaneous Neurofibromas Revealed by Mice with Nf1 Knockout in Boundary Cap Cells

Katarzyna J Radomska , Fanny Coulpier , Aurelie Gresset , Alain Schmitt , Amal Debbiche et al.
Cancer Discovery, In press, 9 (1), pp.130-147. ⟨10.1158/2159-8290.CD-18-0156⟩
Article dans une revue hal-03822481 v1
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Active intermixing of indirect and direct neurons builds the striatal mosaic

Andrea Tinterri , Fabien Ménardy , Marco Diana , Ludmilla Lokmane , Maryama Keita et al.
Nature Communications, 2018, 9 (1), pp.4725. ⟨10.1038/s41467-018-07171-4⟩
Article dans une revue hal-01927169 v1
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Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction

Ivanova Christa , Ramoni Jonas , Thiziri Aouam , Frischmann Alexa , Bernhard Seiboth et al.
Biotechnology for Biofuels, 2017, 10, pp.209. ⟨10.1186/s13068-017-0897-7⟩
Article dans une revue hal-01592860 v1

Quaking RNA-Binding Proteins Control Early Myofibril Formation by Modulating Tropomyosin

Aline Bonnet , Guillaume Lambert , Sylvain Ernest , François Xavier Dutrieux , Fanny Coulpier et al.
Developmental Cell, 2017, 42 (5), pp.527-541.e4. ⟨10.1016/j.devcel.2017.08.004⟩
Article dans une revue hal-03842667 v1

Aozan: an automated post-sequencing data-processing pipeline

Sandrine Perrin , Cyril Firmo , Sophie Lemoine , Stéphane Le Crom , Laurent Jourdren
Bioinformatics, 2017, 33 (14), pp.2212-2213. ⟨10.1093/bioinformatics/btx154⟩
Article dans une revue hal-03842523 v1

IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans

Fawaz Alzaid , Floriane Lagadec , Miguel Albuquerque , Raphaëlle Ballaire , Lucie Orliaguet et al.
JCI Insight, 2016, 1 (20), ⟨10.1172/jci.insight.88689⟩
Article dans une revue hal-03842669 v1

Control of Plasma Membrane Permeability by ABC Transporters

Svetlana Khakhina , Soraya S. Johnson , Raman Manoharlal , Sarah B. Russo , Corinne Blugeon et al.
Eukaryotic Cell, 2015, 14 (5), pp.442-453. ⟨10.1128/EC.00021-15⟩
Article dans une revue hal-01528527 v1

The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei

Sara Ghassemi , Alexander Lichius , Fréderique Bidard , Sophie Lemoine , Marie‐noëlle Rossignol et al.
Molecular Microbiology, 2015, 96 (2), pp.405-418. ⟨10.1111/mmi.12944⟩
Article dans une revue hal-03842675 v1
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Role of the DHH1 Gene in the Regulation of Monocarboxylic Acids Transporters Expression in Saccharomyces cerevisiae

Sandra Mota , Neide Vieira , Sónia Barbosa , Thierry Delaveau , Claire Torchet et al.
PLoS ONE, 2014, 9 (11), pp.e111589. ⟨10.1371/journal.pone.0111589⟩
Article dans une revue hal-01527344 v1

High-Frequency Promoter Firing Links THO Complex Function to Heavy Chromatin Formation

John Mouaikel , Sebastien Z. Causse , Mathieu Rougemaille , Yves Daubenton-Carafa , Corinne Blugeon et al.
Cell Reports, 2013, 5 (4), pp.1082-1094. ⟨10.1016/j.celrep.2013.10.013⟩
Article dans une revue hal-01528425 v1
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Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress

Geraldine Servant , Benoît Pinson , Aurélie Tchalikian-Cosson , Fanny Coulpier , Sophie Lemoine et al.
Nucleic Acids Research, 2012, 40 (12), pp.5271-5282. ⟨10.1093/nar/gks166⟩
Article dans une revue hal-02119179 v1
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RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.

Sanjiveeni Dhamgaye , Maria Bernard , Gaëlle Lelandais , Odile Sismeiro , Sophie Lemoine et al.
BMC Genomics, 2012, 13 (1), pp.396. ⟨10.1186/1471-2164-13-396⟩
Article dans une revue inserm-00733893 v1

Tye 7 regulates yeast Ty1 retrotransposon sense and sntisense transcription in response to adenylic nucleotide stress

G. Servant , Benoît Pinson , A. Tchalikian-Cosson , F. Coulpier , S. Lemoine et al.
Nucleic Acids Research, 2012, pp.00-00
Article dans une revue hal-00703347 v1
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Ploidy influences cellular responses to gross chromosomal rearrangements in saccharomyces cerevisiae

Paul P. Jung , Emilie Fritsch , Corinne Blugeon , Jean-Luc Souciet , Serge Potier et al.
BMC Genomics, 2011, 12 (1), pp.331. ⟨10.1186/1471-2164-12-331⟩
Article dans une revue inserm-00617205 v1

Physiological and toxic effects of the purine intermediate 5-amino-4-imidazolecarboxamide ribonucleotide (AICAR) in yeast.

Hans C Hürlimann , B. Laloo , B. Simon-Kayser , Christelle Saint-Marc , F. Coulpier et al.
Journal of Biological Chemistry, 2011, sous presse, pp.00-00
Article dans une revue hal-00608534 v1

An evaluation of custom microarray applications: the oligonucleotide design challenge

Sophie Lemoine , Florence Combes , Stéphane Le Crom
Nucleic Acids Research, 2009, 37 (6), pp.1726-39. ⟨10.1093/nar/gkp053⟩
Article dans une revue hal-02879348 v1

Selection of oligonucleotides for whole-genome microarrays with semi-automatic update.

G. Golfier , Sophie Lemoine , A van Miltenberg , A Bendjoudi , J. Rossier et al.
Bioinformatics, 2009, 25 (1), pp.128-9. ⟨10.1093/bioinformatics/btn573⟩
Article dans une revue hal-02879352 v1

Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways

Benoît Pinson , Sabine Vaur , Isabelle Sagot , F. Coulpier , S. Lemoine et al.
Genes and Development, 2009, 23 (12), pp.1399-1407
Article dans une revue hal-00403264 v1

Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization

Yann Saint-Georges , Mathilde Garcia , Thierry Delaveau , Laurent Jourdren , Stephane Le Crom et al.
PLoS ONE, 2008, 3 (6), pp.e2293. ⟨10.1371/journal.pone.0002293⟩
Article dans une revue hal-02098526 v1

Non-productive docking of mRNPs to the nuclear pore in THO/sub2 mutants

M. Rougemaille , E. Kisseleva-Romanova , R. Kanthgudipati , S. Lemoine , C. Blugeon et al.
Cell, 2008, 135, pp.308-321
Article dans une revue hal-00333123 v1

Structure and properties of transcriptional networks driving selenite stress response in yeasts

Hélène Salin , Vivienne Fardeau , Eugenia Piccini , Gaelle Lelandais , Véronique Tanty et al.
BMC Genomics, 2008, 9 (1), pp.333. ⟨10.1186/1471-2164-9-333⟩
Article dans une revue hal-03842687 v1

Yeast mitochondrial biogenesis : a role for the PUF RNA binding protein Puf3p in mRNA localization

Y. Saint-Georges , M. Garcia , T. Delaveau , Stéphane Le Crom , S. Lemoine et al.
PLoS ONE, 2008, pp.3(6) e2293
Article dans une revue hal-00333137 v1

THO/Sub2p Functions to Coordinate 3′-End Processing with Gene-Nuclear Pore Association

Mathieu Rougemaille , Guennaelle Dieppois , Elena Kisseleva-Romanova , Rajani Kanth Gudipati , Sophie Lemoine et al.
Cell, 2008, 135 (2), pp.308-321. ⟨10.1016/j.cell.2008.08.005⟩
Article dans une revue hal-03842689 v1

The central role of PDR1 in the foundation of yeast drug resistance.

V. Fardeau , G. Lelandais , A. Oldfield , H. Salin , S. Lemoine et al.
Journal of Biological Chemistry, 2007, 282, pp.5063-5074
Article dans une revue hal-00173044 v1
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Goulphar: rapid access and expertise for standard two-color microarray normalization methods.

Sophie Lemoine , Florence Combes , Nicolas Servant , Stéphane Le Crom
BMC Bioinformatics, 2006, 7, pp.467. ⟨10.1186/1471-2105-7-467⟩
Article dans une revue inserm-00122139 v1