Louis-Félix Nothias

27
Documents

Publications

Publications

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MetaboT: A Conversational AI-Agent for Accessible Mass Spectrometry Metabolomics Data Mining

Madina Bekbergenova , Lucas Pradi , Emma Tysinger , Benjamin Navet , Olivier Kirchhoffer et al.

The 21st Annual Conference of the Metabolomics Society, Jun 2025, Prague, Czech Republic

Poster de conférence hal-05235334v1
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Gen²KGBot: Generic Generative Knowledge Graph Robot

Yousouf Taghzouti , Louis-Félix Nothias , Franck Michel , Fabien Gandon

AI Action Summit, Feb 2025, Paris, France.

Poster de conférence hal-05333244v1
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MetaboT: A conversational AI agent for accessible Mass Spectrometry Metabolomics Data Mining

Madina Bekbergenova , Lucas Pradi , Emma Tysinger , Benjamin Navet , Olivier Kirchhoffer et al.

Benelux Metabolomics Days 2025, Aug 2025, Leiden, Netherlands

Poster de conférence hal-05235376v1
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Perspicacité-AI: An AI-Pipeline for Accelerating Scientific Education and Research

Lucas Pradi , Tao Jiang , Matthieu Féraud , Madina Bekbergenova , Yousouf Taghzouti et al.

Metabolomics 2025, Jun 2025, Prage, Czech Republic

Poster de conférence hal-05232923v1
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MetaboT: AI-based agent for interaction with metabolomics knowledge graphs

Madina Bekbergenova , Lucas Pradi , Benjamin Navet , Yousouf Taghzouti , Emma Tysinger et al.

EDSFA 2nd year PhD Workshop, May 2025, Sophia -Antipolis, France

Poster de conférence hal-05235422v1
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Building Questions and Queries Datasets for Knowledge Graphs: a Demo of Q²Forge Pipeline

Yousouf Taghzouti , Franck Michel , Tao Jiang , Louis-Félix Nothias , Fabien Gandon

ISWC 2025: The 24th International Semantic Web Conference, Nov 2025, Nara, Japan. , CEUR-worshop proceedings, CEUR-4085

Poster de conférence hal-05332768v1
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ScienceXGuide Pipeline: An AI-Pipeline for Accelerating Scientific Education and Research

Lucas Pradi , Madina Bekbergenova , Louis-Félix Nothias

Benelux Metabolomics Days 2024, Sep 2024, Ghent, Belgium

Poster de conférence hal-05233198v1

MetaboT: A Conversational AI-Agent for Accessible Mass Spectrometry Metabolomics Data Mining

Louis-Félix Nothias

72nd Conference on Mass Spectrometry and Allied Topics, Jul 2024, Anaheim (California), United States

Poster de conférence hal-04803451v1
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MetaboT: A Conversational AI-Agent for Accessible Mass Spectrometry Metabolomics Data Mining

Madina Bekbergenova , Lucas Pradi , Emma Tysinger , Benjamin Navet , Olivier Kirchhoffer et al.

Benelux Metabolomics Days 2024, Sep 2024, Ghent, Belgium

Poster de conférence hal-05235292v1
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MetaboT: AI-based agent for natural language-based interaction with metabolomics knowledge graphs

Madina Bekbergenova , Lucas Pradi , Benjamin Navet , Emma Tysinger , Franck Michel et al.

33rd annual international conference on Intelligent Systems for Molecular Biology (ISMB 2025) / 24th Annual Conference of the European Conference on Computational Biology (ECCB 2025), Jul 2025, Liverpool, United Kingdom

Communication dans un congrès hal-05235355v1
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Perspicacité-AI

Lucas Pradi , Tao Jiang , Matthieu Féraud , Madina Bekbergenova , Yousouf Taghzouti et al.

Metabolomics Symposium, Jul 2025, Nice, France

Communication dans un congrès hal-05233151v1
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Q²Forge: Minting Competency Questions and SPARQL Queries for Question-Answering Over Knowledge Graphs

Yousouf Taghzouti , Franck Michel , Tao Jiang , Louis-Félix Nothias , Fabien Gandon

K-CAP '25 - Knowledge Capture Conference 2025, Dec 2025, Dayton, OH, United States. ⟨10.1145/3731443.3771350⟩

Communication dans un congrès hal-05070442v3

Discovering novel microbially-conjugated bile acids with metabolomics

Louis-Félix Nothias

Feeding the Microbiota 2024, Hopitaux Universitaires de Genève, Feb 2024, Genève, France

Communication dans un congrès hal-04803440v1

Discovering Microbially Conjugated Bile Acids with Computational Metabolomics

Louis-Félix Nothias

2024 6th Labex SIGNALIFE Meeting, Université Côte d'Azur; Labex SIGNALIFE, Nov 2024, Nice, France

Communication dans un congrès hal-04803428v1

A Conversational AI-Agent for Accessible Mass Spectrometry Metabolomics Data Mining

Louis-Félix Nothias

Metabolomics Society annual meeting 2024, Metabolomics Society, Jun 2024, Osaka, Japan

Communication dans un congrès hal-04803460v1

An Artificial Intelligence Agent for Navigating Knowledge Graph Experimental Metabolomics Data

Emma Tysinger , Marco Pagni , Olivier Kirchhoffer , Florence Mehl , Fabien Gandon et al.

2023 Swiss Metabolomics Society Annual Meeting, Swiss Metabolomics Socitety Zurich; ETH Zurich, Sep 2023, Zurich, Switzerland

Communication dans un congrès hal-04381448v1

Reproducible mass spectrometry data processing and compound annotation in MZmine 3

Steffen Heuckeroth , Tito Damiani , Aleksandr Smirnov , Olena Mokshyna , Corinna Brungs et al.

Nature Protocols, 2024, 19 (9), pp.2597-2641. ⟨10.1038/s41596-024-00996-y⟩

Article dans une revue hal-04803362v1

Comprehensive mass spectrometric metabolomic profiling of a chemically diverse collection of plants of the Celastraceae family

Luis-Manuel Quiros-Guerrero , Pierre-Marie Allard , Louis-Félix Nothias , Bruno David , Antonio Grondin et al.

Scientific Data , 2024, 11 (1), pp.415. ⟨10.1038/s41597-024-03094-6⟩

Article dans une revue hal-04803402v1

Open access repository-scale propagated nearest neighbor suspect spectral library for untargeted metabolomics

Wout Bittremieux , Nicole Avalon , Sydney Thomas , Sarvar Kakhkhorov , Alexander Aksenov et al.

Nature Communications, 2023, 14 (1), pp.8488. ⟨10.1038/s41467-023-44035-y⟩

Article dans une revue hal-04803380v1
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Standardized multi-omics of Earth’s microbiomes reveals microbial and metabolite diversity

Justin Shaffer , Louis-Félix Nothias , Luke Thompson , Jon Sanders , Rodolfo Salido et al.

Nature Microbiology, 2022, 7 (12), pp.2128-2150. ⟨10.1038/s41564-022-01266-x⟩

Article dans une revue hal-04277809v1

ReDU: a framework to find and reanalyze public mass spectrometry data

Alan Jarmusch , Mingxun Wang , Christine Aceves , Rohit Advani , Shaden Aguirre et al.

Nature Methods, 2020, 17 (9), pp.901-904. ⟨10.1038/s41592-020-0916-7⟩

Article dans une revue hal-04886483v1
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Investigation of Premyrsinane and Myrsinane Esters in Euphorbia cupanii and Euphobia pithyusa with MS2LDA and Combinatorial Molecular Network Annotation Propagation

Mélissa Nothias-Esposito , Louis-Félix Nothias , Ricardo da Silva , Pascal ́ Retailleau , Zheng Zhang et al.

Journal of Natural Products, 2019, 82 (6), pp.1459-1470. ⟨10.1021/acs.jnatprod.8b00916⟩

Article dans une revue hal-02159546v1

Bioactivity-Based Molecular Networking for the Discovery of Drug Leads in Natural Product Bioassay-Guided Fractionation

Louis-Félix Nothias , Mélissa Nothias-Esposito , Ricardo da Silva , Mingxun Wang , Ivan Protsyuk et al.

Journal of Natural Products, 2018, 81 (4), pp.758-767. ⟨10.1021/acs.jnatprod.7b00737⟩

Article dans une revue hal-04439264v1