Luca Ciandrini

36
Documents

Publications

Publications

How total mRNA influences cell growth

Ludovico Calabrese , Luca Ciandrini , Marco Cosentino Lagomarsino
Proceedings of the National Academy of Sciences of the United States of America, 2024, 121 (21), ⟨10.1073/pnas.2400679121⟩
Article dans une revue hal-04945737 v1
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Optimal control of ribosome population for gene expression under periodic nutrient intake

Clément Soubrier , Eric Foxall , Luca Ciandrini , Khanh Dao Duc
Journal of the Royal Society Interface, 2024, 21 (212), pp.20230652. ⟨10.1098/rsif.2023.0652⟩
Article dans une revue hal-04789156 v1

TASEPy: A Python-based package to iteratively solve the inhomogeneous exclusion process

Luca Ciandrini , Richmond Crisostomo , Juraj Szavits-Nossan
SciPost Physics Codebases, 2023, pp.22. ⟨10.21468/SciPostPhysCodeb.22⟩
Article dans une revue hal-04945758 v1
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Protein degradation sets the fraction of active ribosomes at vanishing growth

Ludovico Calabrese , Jacopo Grilli , Matteo Osella , Christopher Kempes , Marco Cosentino Lagomarsino et al.
PLoS Computational Biology, 2022, 18 (5), pp.e1010059. ⟨10.1371/journal.pcbi.1010059⟩
Article dans une revue hal-03980452 v1
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Inferring efficiency of translation initiation and elongation from ribosome profiling

Juraj Szavits-Nossan , Luca Ciandrini
Nucleic Acids Research, 2020, 48, pp.9478 - 9490. ⟨10.1093/nar/gkaa678⟩
Article dans une revue hal-03980481 v1
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Rational programming of history-dependent logic in cellular populations

Ana Zúñiga , Sarah Guiziou , Pauline Mayonove , Zachary Ben Meriem , Miguel Camacho et al.
Nature Communications, 2020, 11 (1), pp.4758. ⟨10.1038/s41467-020-18455-z⟩
Article dans une revue inserm-02952457 v1

Unraveling Molecular Interactions in Liquid–Liquid Phase Separation of Disordered Proteins by Atomistic Simulations

Matteo Paloni , Rémy Bailly , Luca Ciandrini , Alessandro Barducci
Journal of Physical Chemistry B, 2020, 124 (41), pp.9009-9016. ⟨10.1021/acs.jpcb.0c06288⟩
Article dans une revue hal-03334992 v1

An equilibrium model for ribosome competition

Pascal Rogalla , Timothy Rudge , Luca Ciandrini
Physical Biology, 2019, 17 (1), pp.015002. ⟨10.1088/1478-3975/ab4fbc⟩
Article dans une revue hal-04945783 v1
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Driven transport on a flexible polymer with particle recycling: A model inspired by transcription and translation

Lucas Dias Fernandes , Luca Ciandrini
Physical Review E , 2019, 99 (5), pp.052409. ⟨10.1103/PhysRevE.99.052409⟩
Article dans une revue hal-01743450 v1
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Exclusion process subject to conformational size changes

Yvan Rousset , Luca Ciandrini , Norbert Kern
SciPost Physics, 2019, 6 (6), pp.077. ⟨10.21468/SciPostPhys.6.6.077⟩
Article dans une revue hal-04773708 v1
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Power series solution of the inhomogeneous exclusion process

Juraj Szavits-Nossan , M. Carmen Romano , Luca Ciandrini
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2018, 97, pp.052139. ⟨10.1103/PhysRevE.97.052139⟩
Article dans une revue hal-01737998 v1
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Deciphering mRNA Sequence Determinants of Protein Production Rate

Juraj Szavits-Nossan , Luca Ciandrini , M. Carmen Romano
Physical Review Letters, 2018, 120, pp.128101. ⟨10.1103/PhysRevLett.120.128101⟩
Article dans une revue hal-01585251 v1
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Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights

Lucas Dias Fernandes , Alessandro de Moura , Luca Ciandrini
Scientific Reports, 2017, 7, pp.17409. ⟨10.1038/s41598-017-17618-1⟩
Article dans une revue hal-01585262 v1
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Identification of the mRNA targets of tRNA-specific regulation using genome-wide simulation of translation.

Barbara Gorgoni , Luca Ciandrini , Matthew R Mcfarland , M Carmen Romano , Ian Stansfield
Nucleic Acids Research, 2016, 44 (19), pp.9231-9244. ⟨10.1093/nar/gkw630⟩
Article dans une revue hal-02060317 v1

Stepping and crowding of molecular motors: statistical kinetics from an exclusion process perspective

Luca Ciandrini , M. Carmen Romano , Andrea Parmeggiani
Biophysical Journal, 2014, 107 (5), pp.1176-1184. ⟨10.1016/j.bpj.2014.07.012⟩
Article dans une revue hal-01061351 v1
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Motor proteins traffic regulation by supply-demand balance of resources

Luca Ciandrini , Izaak Neri , Jean-Charles Walter , Olivier Dauloudet , Andrea Parmeggiani
Physical Biology, 2014, 11 (5), pp.056006. ⟨10.1088/1478-3975/11/5/056006⟩
Article dans une revue hal-01063014 v1
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Transport on a lattice with dynamical defects

Francesco Turci , Andrea Parmeggiani , Estelle Pitard , M. Carmen Romano , Luca Ciandrini
Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, 2013, 87 (1), pp.012705. ⟨10.1103/PhysRevE.87.012705⟩
Article dans une revue hal-00816492 v1

Codon bias and cost of ribosome usage

Luca Ciandrini
Statistical physics of cells and genomes, Marco Cosentino Lagomarsino (CNRS/Sorbonne; Paris and IFOM Milan), May 2018, Alghero, Italy
Communication dans un congrès hal-01938405 v1

Driven transport on a polymer: a model inspired by transcription and translation

Luca Ciandrini
Rencontre de Physique Statistique, Jan 2018, Paris, France
Communication dans un congrès hal-01938456 v1

Ribosome economics: Ribosome usage in translation initiation and elongation

Luca Ciandrini
Reverse mathematical methods for reconstructing molecular dynamics in single cell, Centro di Ricerca Matematica Ennio de Giorgi, Oct 2018, Pisa, Italy
Communication dans un congrès hal-01935528 v1

Deciphering mRNA sequence determinants of protein production rate

Luca Ciandrini
Biophysics: Today and Beyond, Joint Meeting GRISBI; Labex EpiGenMed; Labex NUMEV, Apr 2018, Montpellier, France
Communication dans un congrès hal-01938431 v1
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Deciphering mRNA sequence determinants of protein production rate

Luca Ciandrini
Biophysics: Today and Beyond, Joint Meeting GRISBI; Labex EpiGenMed; Labex NUMEV, Apr 2018, Montpellier, France
Communication dans un congrès hal-01938431 v1

Ribosome Economics: Ribosome usage, translation initiation and elongation

Luca Ciandrini
Integrative Cell Models for Disease Intervention, Banff International Research Station, Jun 2018, Banff, Canada
Communication dans un congrès hal-01938095 v1

Gene length as a regulator for ribosome recruitment and protein synthesis: theoretical insights

Luca Ciandrini
Meeting of the International Physics of Living Systems (iPoLS) Network, Jun 2017, Paris, France
Communication dans un congrès hal-01938945 v1

A quantitative view on mRNA translation: the relative role of initiation and elongation

Luca Ciandrini
Quantitative Laws II: Physiology, ecology, interaction structures, collective behavior, Jun 2016, Como, Italy
Communication dans un congrès hal-01939004 v1

Cellular Tradeoff between Resources and Demand in gene Expression

Luca Ciandrini
Como Pohskrow, Oct 2016, Como, Italy
Communication dans un congrès hal-01939053 v1

Transcript length as a main determinant of mRNA translation efficiency

Luca Ciandrini
Quantitative Methods in Gene Regulation III, Dec 2015, Cambridge, United Kingdom
Communication dans un congrès hal-01939067 v1

Molecular Motors with a Stepping Cycle: From Theory to Experiments

Luca Ciandrini
Traffic and Granular Flow '13, Sep 2013, Julich, Germany. pp.619-627, ⟨10.1007/978-3-319-10629-8_70⟩
Communication dans un congrès hal-01103149 v1

Ribosome recycling as a main determinant of experimental ribosome densities

Luca Ciandrini
EMBO fellows’ meeting, Jun 2015, Heidelberg, Germany
Communication dans un congrès hal-01939095 v1

Crowded mRNAs and translation efficiency: from theory to experiments and speculations

Luca Ciandrini
Chromosome Structure and Function: Experiments and Modeling, SISSA, Oct 2013, Trieste, Italy
Communication dans un congrès hal-01939133 v1

Fluctuations and cooperative properties of molecular motors: from theory to experiments

Luca Ciandrini
Traffic and Granular Flow '13, Sep 2013, Juelich, Germany
Communication dans un congrès hal-01939150 v1

Stepping and crowding ofmolecular motors: from theory to mRNA translation

Luca Ciandrini
Paris Biological Physics Community Day, Dec 2013, Paris, France
Communication dans un congrès hal-01939123 v1

Quantifying gene expression at the level of translation

Luca Ciandrini
Quantitative Laws of Genome Evolution, Jun 2013, Como, Italy
Communication dans un congrès hal-01939022 v1

Predicting the steady-state rate of mRNA translation in protein biosynthesis

Juraj Szavits-Nossan , Luca Ciandrini , Carmen Maria Romano
19th IUPAB congress and 11th EBSA congress, Jul 2017, Edinburgh, United Kingdom
Poster de conférence hal-01938988 v1

Genelength as a regulator for ribosome recruitmentand protein synthesis: theoretical insights

Luca Ciandrini
Protein Synthesis and Translational Control, Sep 2017, Heidelberg, Germany
Poster de conférence hal-01938973 v1