Access content directly

Marc ALLAIN

83
Documents

Publications

Image document

Super-resolved total internal reflection fluorescence microscopy using random illuminations

Kévin Affannoukoué , Simon Labouesse , Guillaume Maire , Laurent Gallais , Julien Savatier
Optica, 2023, 10 (8), pp.1009. ⟨10.1364/optica.487003⟩
Journal articles hal-04172900v1

Concurrent multi-peak Bragg coherent x-ray diffraction imaging of 3D nanocrystal lattice displacement via global optimization

Siddharth Maddali , Travis Frazer , Nazar Delegan , Katherine Harmon , Sean Sullivan
npj Computational Materials, 2023, 9 (1), pp.77. ⟨10.1038/s41524-023-01022-7⟩
Journal articles hal-04412853v1
Image document

4th generation synchrotron source boosts crystalline imaging at the nanoscale

Peng Li , Marc Allain , Tilman Grünewald , Marcus Rommel , Andrea Campos
Light: Science and Applications, 2022, 11, pp.73. ⟨10.1038/s41377-022-00758-z⟩
Journal articles hal-03573695v1
Image document

Super-resolved live-cell imaging using Random Illumination Microscopy

Thomas Mangeat , Simon Labouesse , Marc Allain , Emmanuel Martin , Renaud Poincloux
Cell Reports Methods, 2021, 1 (1), pp.100009. ⟨10.1016/j.crmeth.2021.100009⟩
Journal articles hal-02564126v1

Efficient ptychographic phase retrieval via a matrix-free Levenberg-Marquardt algorithm

Marc Allain , Saugat Kandel , S. Maddali , Youssef Nashed , Stephan Hruszkewycz
Optics Express, 2021, 29 (15), pp.23019. ⟨10.1364/OE.422768⟩
Journal articles hal-03546636v1
Image document

Revealing nano-scale lattice distortions in implanted material with 3D Bragg ptychography

Peng Li , Nicholas Phillips , Steven Leake , Marc Allain , Felix Hofmann
Nature Communications, 2021, 12 (1), pp.7059. ⟨10.1038/s41467-021-27224-5⟩
Journal articles hal-03465546v1

Sub-pixel high-resolution imaging of high-energy x-rays inspired by sub-wavelength optical imaging

Marc Allain , N. Bertaux , J. Weizeorick , J.-S. Park , P. Kenesei
Optics Express, 2021, 29 (22), pp.35003. ⟨10.1364/OE.438945⟩
Journal articles hal-03457026v1
Image document

General approaches for shear-correcting coordinate transformations in Bragg coherent diffraction imaging. Part I

S. Maddali , P. Li , A. Pateras , D. Timbie , N. Delegan
Journal of Applied Crystallography, 2020, 53 (2), pp.393-403. ⟨10.1107/S1600576720001363⟩
Journal articles hal-02537399v1
Image document

General approaches for shear-correcting coordinate transformations in Bragg coherent diffraction imaging. Part II

P. Li , S. Maddali , A. Pateras , I. Calvo-Almazán , S.O. Hruszkewycz
Journal of Applied Crystallography, 2020, 53 (2), pp.404-418. ⟨10.1107/S1600576720001375⟩
Journal articles hal-02537405v1
Image document

Detector tilt considerations in high-energy Bragg coherent diffraction imaging: a simulation study

Siddharth Maddali , Marc Allain , Peng Li , Virginie Chamard , Stephan O. Hruszkewycz
Crystals, 2020, 10 (12), pp.1150. ⟨10.3390/cryst10121150⟩
Journal articles hal-02933941v1
Image document

Impact and mitigation of angular uncertainties in Bragg coherent x-ray diffraction imaging

I. Calvo-Almazán , Marc Allain , S. Maddali , Virginie Chamard , S. Hruszkewycz
Scientific Reports, 2019, 9, pp.6386. ⟨10.1038/s41598-019-42797-4⟩
Journal articles hal-02107745v1
Image document

Joint estimation of object and probes in vectorial ptychography

Arthur Baroni , Marc Allain , Peng Li , Virginie Chamard , Patrick Ferrand
Optics Express, 2019, 27 (6), pp.8143. ⟨10.1364/OE.27.008143⟩
Journal articles hal-02059897v1
Image document

Using automatic differentiation as a general framework for ptychographic reconstruction

Saugat Kandel , S. Maddali , Marc Allain , Stephan Hruszkewycz , Chris Jacobsen
Optics Express, 2019, 27 (13), pp.18653. ⟨10.1364/OE.27.018653⟩
Journal articles hal-02163380v1
Image document

Phase retrieval for Bragg coherent diffraction imaging at high x-ray energies

S. Maddali , Marc Allain , W. Cha , R. Harder , S. Park
Physical Review A : Atomic, molecular, and optical physics [1990-2015], 2019, 99 (5), pp.053838. ⟨10.1103/PhysRevA.99.053838⟩
Journal articles hal-02139472v1
Image document

Quantitative imaging of anisotropic material properties with vectorial ptychography

Patrick Ferrand , Arthur Baroni , Marc Allain , Virginie Chamard
Optics Letters, 2018, 43 (4), pp.763-766. ⟨10.1364/OL.43.000763⟩
Journal articles hal-01653296v2
Image document

On the super-resolution capacity of imagers using unknown speckle illuminations

Jérôme Idier , Simon Labouesse , Marc Allain , Penghuan Liu , Sébastien Bourguignon
IEEE Transactions on Computational Imaging, 2018, 4 (1), pp.87 - 98. ⟨10.1109/TCI.2017.2771729⟩
Journal articles hal-01652762v1
Image document

Measuring three dimensional strain and structural defects in a single InGaAs nanowire using coherent x-ray multi-angle Bragg projection ptychography

Megan Hill , Irene Calvo-Almazan , Marc Allain , Martin Holt , Andrew Ulvestad
Nano Letters, 2018, 18 (2), pp.811-819. ⟨10.1021/acs.nanolett.7b04024⟩
Journal articles hal-01687989v1

Two-photon speckle illumination for super-resolution microscopy

Awoke Negash , Simon Labouesse , Patrick C. Chaumet , Kamal Belkebir , Hugues Giovannini
Journal of the Optical Society of America. A Optics, Image Science, and Vision, 2018, 35 (6), ⟨10.1364/JOSAA.35.001028⟩
Journal articles hal-01838129v1
Image document

Revealing crystalline domains in a mollusc shell single-crystalline prism

Francesca Mastropietro , Pierre Godard , Manfred Burghammer , Corinne Chevallard , Jean Daillant
Nature Materials, 2017, 16, pp.946-952. ⟨10.1038/nmat4937⟩
Journal articles hal-01559691v1
Image document

High-resolution three-dimensional structural microscopy by single-angle Bragg ptychography

S. O. Hruszkewycz , Marc Allain , M. V. Holt , C. E. Murray , J. R. Holt
Nature Materials, 2017, 16, pp.244-251. ⟨10.1038/nmat4798⟩
Journal articles hal-01252892v1
Image document

Joint reconstruction strategy for structured illumination microscopy with unknown illuminations

Simon Labouesse , Marc Allain , Jérôme Idier , Awoke Negash , Thomas Mangeat
IEEE Transactions on Image Processing, 2017, 26 (5), pp.2480-2493. ⟨10.1109/TIP.2017.2675200⟩
Journal articles hal-01554090v1
Image document

Three dimensional variable-wavelength x-ray Bragg coherent diffraction imaging

W. Cha , A. Ulvestad , Marc Allain , Virginie Chamard , R. Harder
Physical Review Letters, 2016, 117, pp.225501. ⟨10.1103/PhysRevLett.117.225501⟩
Journal articles hal-01397101v1

Super-resolution photoacoustic fluctuation imaging with multiple speckle illumination

Thomas Chaigne , Jérôme Gateau , Marc Allain , Ori Katz , Anne Sentenac
Optica, 2016, 3 (1), pp.54-57. ⟨10.1364/OPTICA.3.000054⟩
Journal articles hal-01634450v1
Image document

Far-field diffraction microscopy at λ/10 resolution

Ting Zhang , Charankumar Godavarthi , Patrick C. Chaumet , Guillaume Maire , Hugues Giovannini
Optica, 2016, 3 (6), pp.609-612. ⟨10.1364/OPTICA.3.000609⟩
Journal articles hal-01328835v1

Improving the axial and lateral resolution of three-dimensional fluorescence microscopy using random speckle illuminations

A. Negash , S. Labouesse , Nicolas Sandeau , Marc Allain , Hugues Giovannini
Journal of the Optical Society of America. A, Optics and image science, 2016, 33, pp.1089-1094. ⟨10.1364/JOSAA.33.001089⟩
Journal articles hal-01314573v1

Efficient modeling of Bragg coherent x-ray nanobeam diffraction

S. O. Hruszkewycz , M. V. Holt , Marc Allain , Virginie Chamard , S. M. Polvino
Optics Letters, 2015, 40 (14), pp.3241-3244. ⟨10.1364/OL.40.003241⟩
Journal articles hal-01252899v1
Image document

Nondestructive three-dimensional imaging of crystal strain and rotations in an extended bonded semiconductor heterostructure

Anastasios I. Pateras , Marc Allain , Pierre Godard , L. Largeau , G. Patriarche
Physical Review B: Condensed Matter and Materials Physics (1998-2015), 2015, 92 (20), pp.205305. ⟨10.1103/PhysRevB.92.205305⟩
Journal articles hal-01218363v2
Image document

Strain in a silicon-on-insulator nanostructure revealed by 3D x-ray Bragg ptychography

Virginie Chamard , Marc Allain , P. Godard , A. Talneau , G. Patriarche
Scientific Reports, 2015, 5, pp.9827. ⟨10.1038/srep09827⟩
Journal articles hal-01205699v1
Image document

Ptychography in anisotropic media

Patrick Ferrand , Marc Allain , Virginie Chamard
Optics Letters, 2015, 40 (22), pp.5144-5147. ⟨10.1364/OL.40.005144⟩
Journal articles hal-01213942v1
Image document

X-ray lensless microscopy from undersampled diffraction intensities

F. Berenguer , Pierre Godard , Marc Allain , J.-M. Belloir , A. Talneau
Physical Review B: Condensed Matter and Materials Physics (1998-2015), 2013, 88, pp.144101-1. ⟨10.1103/PhysRevB.88.144101⟩
Journal articles hal-00870328v1
Image document

Noise models for low counting rate coherent diffraction imaging

Pierre Godard , Marc Allain , Virginie Chamard , J. Rodenburg
Optics Express, 2012, 20, pp.25914-25934. ⟨10.1364/OE.20.025914⟩
Journal articles hal-00870322v1

Structured illumination microscopy using unknown speckle patterns

Emeric Mudry , Kamal Belkebir , J. Girard , Julien Savatier , Emmeran Le Moal
Nature Photonics, 2012, 6 (5), pp.312-315. ⟨10.1038/nphoton.2012.83⟩
Journal articles hal-00738270v1
Image document

Three-dimensional high-resolution quantitative microscopy of extended crystals

Pierre Godard , G. Carbone , Marc Allain , Francesca Mastropietro , G. Chen
Nature Communications, 2011, 2, pp.568. ⟨10.1038/ncomms1569⟩
Journal articles hal-00738278v1

Smooth contour coding with minimal description length active grid segmentation techniques

Frédéric Galland , Arnaud Jaegler , Marc Allain , David Savery , Philippe Réfrégier
Pattern Recognition Letters, 2011, 32 (5), pp.721-730. ⟨10.1016/j.patrec.2010.12.007⟩
Journal articles hal-00649542v1
Image document

Imaging of highly inhomogeneous strain field in nanocrystals using x-ray Bragg ptychography: A numerical study

Pierre Godard , Marc Allain , Virginie Chamard
Physical Review B: Condensed Matter and Materials Physics (1998-2015), 2011, 84 (14), pp.144109. ⟨10.1103/PhysRevB.84.144109⟩
Journal articles hal-00649563v1

Cramer-Rao analysis of steady-state and time-domain fluorescence diffuse optical imaging

Matthieu Boffety , Marc Allain , Anne Sentenac , M. Massonneau , Rémi Carminati
Biomedical optics express, 2011, pp.1626-36. ⟨10.1364/BOE.2.001626⟩
Journal articles hal-00649575v1

Analysis of the depth resolution limit of luminescence diffuse optical imaging

Matthieu Boffety , Marc Allain , Anne Sentenac , M. Massonneau , Rémi Carminati
Optics Letters, 2008, 33 (20), pp.2290-2292. ⟨10.1364/OL.33.002290⟩
Journal articles hal-00325688v1
Image document

Efficient binary reconstruction for non destructive evaluation using gammagraphy

Marc Allain , Jérôme Idier
Inverse Problems, 2007, 23 (4), pp.1371-1393. ⟨10.1088/0266-5611/23/4/002⟩
Journal articles hal-00147782v1

On global and local convergence of half-quadratic algorithms

Marc Allain , Jérôme Idier , Yves Goussard
IEEE Transactions on Image Processing, 2006, 15 (5), pp.1130-1142. ⟨10.1109/TIP.2005.864173⟩
Journal articles hal-00400663v1
Image document

Imaging techniques for gamma-ray diffuse emission: application to INTEGRAL/SPI

Marc Allain , Jean-Pierre Roques
Astronomy and Astrophysics - A&A, 2006, 447 (3), pp.1175-1187. ⟨10.1051/0004-6361:20042513⟩
Journal articles hal-00457476v2
Image document

Méthodes d'inversion rapide pour RIM (Random Illumination Microscopy)

Guillaume Giroussens , Marc Allain , Anne Sentenac , Jérôme Idier , Simon Labouesse
GRETSI 2023, Aug 2023, Grenoble (38000), France
Conference papers hal-04256660v1
Image document

Proof of the resolution-doubling of Random Illumination Microscopy using the variance of the speckled images

Simon Labouesse , Jérôme Idier , Anne Sentenac , Marc Allain , Thomas Mangeat
2021 29th European Signal Processing Conference (EUSIPCO), Aug 2021, Dublin, Ireland. pp.1159-1162, ⟨10.23919/EUSIPCO54536.2021.9616038⟩
Conference papers hal-03538553v1
Image document

Random Illumination Microscopy from Variance Images

Simon Labouesse , Jérôme Idier , Anne Sentenac , Thomas Mangeat , Marc Allain
EUSIPCO 2020, Jan 2021, Amsterdam, Netherlands. pp.785-789, ⟨10.23919/Eusipco47968.2020.9287651⟩
Conference papers hal-03010108v1

Quantitative structural imaging of biominerals by vectorial ptychography

Arthur Baroni , Marc Allain , Peng Li , Virginie Chamard , Patrick Ferrand
14th International Coral Reef Symposium (ICRS 2020) (cancelled Covid-19), Jul 2020, Bremen, Germany
Conference papers hal-02537368v1

Quantitative imaging of anisotropic materials by vectorial ptychography

Arthur Baroni , Marc Allain , Peng Li , Virginie Chamard , Patrick Ferrand
Focus on Microscopy (FOM 2019), Apr 2019, Londres, United Kingdom
Conference papers hal-02068493v1

Progress in vectorial ptychography: towards quantitative structural imaging of biominerals

Arthur Baroni , Marc Allain , Peng Li , Virginie Chamard , Patrick Ferrand
Microscience Microscopy Congress 2019 (mmc2019), Jul 2019, Manchester, United Kingdom
Conference papers hal-02106850v1

Multi-angle Bragg projection ptychography with probe retrieval

Peng Li , Felix Hofmann , Steven Leake , Marc Allain , Virginie Chamard
The Minerals, Metals & Materials Society Annual Meeting (TMS2019), Mar 2019, San Antonio, TX, United States
Conference papers hal-02068490v1

Characterising the illumination function for Bragg ptychography microscopy

Peng Li , Marc Allain , Chan Kim , Anders Madsen , Virginie Chamard
ESRF User Meeting 2018, Feb 2018, Grenoble, France
Conference papers hal-01698456v1

Bragg Geometry X-ray Coherent Diffraction Imaging: Know before you go...

Marc Allain , S. O. Hruszkewycz , Virginie Chamard
Coherence 2018: International Workshop on Phase Retrieval and Coherent Scattering, Jun 2018, Port Jefferson, NY, United States
Conference papers hal-01872043v1

Microscopie de biréfringence par ptychographie vectorielle

Arthur Baroni , Patrick Ferrand , Marc Allain , Virginie Chamard
13e journées Imagerie Optique Non Conventionnelle (JOINC), Mar 2018, Paris, France
Conference papers hal-01743528v1

Minimum contrast estimation for super-resolution fluorescence microscopy using speckle patterns

Penghuan Liu , Jérôme Idier , Sébastien Bourguignon , Simon Labouesse , Marc Allain
GRETSI, Sep 2017, Juan-Les-Pins, France
Conference papers hal-01762453v1

Three-dimensional in operando imaging of a semiconductor heterostructure through X-ray Bragg ptychography

A. I. Pateras , Marc Allain , P. Godard , L. Largeau , G. Patriarche
International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2016), Jun 2016, Saint Malo, France
Conference papers hal-01328800v1

Revealing the meso-crystallinity arrangement of a "single-crystalline" calcareous biomineral

Francesca Mastropietro , Marc Allain , M. Burghammer , Corinne Chevallard , A. Talneau
International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2016), Jun 2016, Saint Malo, France
Conference papers hal-01328816v1

Coherent imaging with polarized probes: when to go for vectorial?

Patrick Ferrand , Marc Allain , Virginie Chamard
International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2016), Jun 2016, Saint Malo, France
Conference papers hal-01313081v1
Image document

Fluorescence blind structured illumination microscopy: a new reconstruction strategy

S. Labouesse , Marc Allain , A. Negash , P. Liu , A. Sentenac
IEEE International Conference on Image Processing, IEEE, Sep 2016, Phoenix, United States
Conference papers hal-01264977v2

Domain structure retrieval of a simulated ferroelectric film via 3D Bragg ptychography

A. Troian , Marc Allain , S. Matsen , V. L. R. Jacques , B. Noheda
International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2016), Jun 2016, Saint Malo, France
Conference papers hal-01328517v1

A marginal image reconstruction approach in fluorescence microscopy with pseudo-random illumination patterns

Penghuan Liu , Sébastien Bourguignon , Jérôme Idier , Marc Allain , Simon Labouesse
OSA Conference : Imaging and Applied Optics, 2016, Heidelberg, Germany
Conference papers hal-02582750v1

Super-resolution capacity of imagers using random illuminations

Simon Labouesse , Jérôme Idier , Penghuan Liu , Marc Allain , Sébastien Bourguignon
OSA Conference : Imaging and Applied Optics, 2016, Heidelberg, Germany
Conference papers hal-02582803v1

Blind fluorescence structured illumination microscopy: A new reconstruction strategy

Simon Labouesse , Marc Allain , Jérôme Idier , Sébastien Bourguignon , Penghuan Liu
Actes du 25e colloque GRETSI, 2015, Lyon, France
Conference papers hal-02582220v1

Anisotropic distribution of orientations of crystalline domains in calcite bio-minerals revealed by high-resolution x-ray diffraction microscopy

F. Mastropietro , P. Godard , Marc Allain , J.-P. Cuif , Y. Dauphin
ESRF User meeting, ESRF, Feb 2015, Grenoble, France
Conference papers hal-01254212v1

Reticulated nanostructures in calcareous biocrystals imaged by 3D ptychography

F. Mastropietro , P. Godard , Marc Allain , J.-P. Cuif , Y. Dauphin
12th biennal conference on on High-resolution X-ray Diffraction and Imaging (XTOP 2014), Sep 2014, Vilards de Lans, France
Conference papers hal-01254214v1

Reticulated nanostructures in calcareous biocrystals imaged by 3D ptychography

F. Mastropietro , P. Godard , Marc Allain , J.-P. Cuif , Y. Dauphin
International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2014), Argonne National Laboratory, Sep 2014, Chicago, IL, United States
Conference papers hal-01254215v1

Strain imaging of an InP nanostructured thin film by 3D X-Ray Bragg Ptychography

A. Pateras , Marc Allain , P. Godard , F. Mastropietro , L. Largeau
International Workshop on Phase Retrieval and Coherent Scattering (Coherence 2014), Argonne National Laboratory, Sep 2014, Chicago, IL, United States
Conference papers hal-01254217v1

Blind structured illumination microscopy with distorted light grids

Roland Ayuk , Emeric Mudry , Kamal Belkebir , Jules Girard , Anne Sentenac
Focus On Microscopy, Mar 2013, Maastricht, Netherlands
Conference papers hal-00941740v1

Noise-model dependent iterative algorithms for Coherent Diffractive Imaging with low counting rate

Marc Allain , P. Godard , A. Talneau , M. Burghammer , J. Daillant
International workshop on Phase Retrieval and Coherent Scattering (Coherence 2012), Jun 2012, Fukuoka, Japan
Conference papers hal-01254541v1

Three-dimensional microscopy of shape, density and strain in a nano-structured crystal using Bragg Ptychography: methodological aspects

Virginie Chamard , Marc Allain , P. Godard , A. Talneau , M. Burghammer
International workshop on Phase Retrieval and Coherent Scattering (Coherence 2012), Jun 2012, Fukuoka, Japan
Conference papers hal-01254535v1

Three-dimensional high-resolution quantitative microscopy of extended crystals

P. Godard , G. Carbone , Marc Allain , F. Mastropietro , G. Chen
International workshop on Phase Retrieval and Coherent Scattering (Coherence 2012), Jun 2012, Fukuoka, Japan
Conference papers hal-01254536v1

Luminescence diffuse optical tomography on a reflectance imaging set-up

Matthieu Boffety , Marc Allain , Anne Sentenac , Marc Massonneau , Rémi Carminati
12th European Quantum Electronics Conference CLEO EUROPE/EQEC, May 2011, Munich, France. ⟨10.1109/CLEOE.2011.5943310⟩
Conference papers hal-01688633v1

Limite de précision pour la tomographie optique diffuse de fluorescence en régime continu et temporel.

Matthieu Boffety , Marc Allain , Anne Sentenac , Marc Massonneau , Rémi Carminati
Journées thématiques du GDR Ondes 2011, 2011, Paris, France
Conference papers hal-01688496v1

Intrinsic precision limit in steady-state and time-domain fluorescence diffuse optical imaging

Matthieu Boffety , Marc Allain , Anne Sentenac , Marc Massonneau , Rémi Carminati
12th European Quantum Electronics Conference CLEO EUROPE/EQEC, May 2011, Munich, France. ⟨10.1109/CLEOE.2011.5943248⟩
Conference papers hal-01688630v1

Strain at the nanoscale revealed by 3D lens-less x-ray microscopy

Virginie Chamard , Marc Allain
2nd Congress and General Assembly of the International Union of Crystallography, International Union of Crystallography, Aug 2011, Madrid, Spain
Conference papers hal-01253325v1

Une revue de quelques applications de la minimisation de la complexité stochastique pour la segmentation d'images par grille active

Frédéric Galland , Philippe Réfrégier , Nicolas Bertaux , Marc Allain , Arnaud Jaegler
Journées de probabilité - sélection de modèles, Jun 2009, Poitiers, France
Conference papers hal-00438728v1

Determination of the depth resolution limit of fluorescence diffuse optical tomography.

Matthieu Boffety , Marc Allain , Anne Sentenac , Rémi Carminati , Marc Massonneau
TOPIM2008, Feb 2008, Les Houches, France
Conference papers hal-01688492v1

Nonparametric level-set segmentation based on the minimization of the stochastic complexity

Marc Allain , Nicolas Bertaux , Frédéric Galland
Advanced Concepts for Intelligent Vision Systems Acivs 2008, Oct 2008, Juan les Pins, France. pp.506-517
Conference papers hal-00349861v1