marc galland

Chargé de Recherche INRAE Interactions légumineuses - pucerons
13
Documents
Affiliation actuelle
  • Institut de Génétique, Environnement et Protection des Plantes (IGEPP)
Identifiants chercheurs

Présentation

Since September 2023, I am working at INRAE as a Plant Research Scientist working to understand and improve legume species (pea, faba bean) resistance to aphids. I live in France near Rennes (Brittany), a region full of celtic influence and traces (see picture).

Originally trained as a “wet-lab” Plant Molecular Biologist, I progressively drifted towards Genomics, Data Management and Data Science applied to Plant Science. I will now investigate the genetic basis of aphid resistance in legume crops, a key element of a sustanaible agriculture in temperate and arid dry Mediterranean regions.

From 2014 to 2023 and under the direct supervision of Petra Bleeker and Michel Haring, I spent a great deal of my professional life at the Swammerdam Institute for Life Sciences (University of Amsterdam) as a postdoctoral researcher and support data scientist for experimental researchers. On a day to day basis, I helped experimental Life Scientists facing issues in Bioinformatics, Statistics, Data Science and Genomics and participated to research in the group of Petra Bleeker on tomato resistance to insect pests (whitefly, thrips).

I also coordinated the Amsterdam Science Park Study Group, a small community of computional biologists that foster the adoption of Open Science practices in daily scientific work. We have received funding from NWO (Dutch Research Council) in 2021 and 2022 to expand our activities. Related to this, I also contributed to the establishment and expansion of the University of Amsterdam Data Science Center (DSC), applying Machine Learning techniques in Life Sciences and coordinating training activities of the DSC.

Domaines de recherche

Sciences du Vivant [q-bio]

Compétences

bioinformatics plant genetics specialized metabolism machine learning digital phenotyping plant-insect interactions rna-seq proteomics

Publications

Publications

Image document

PhenoFeatureFinder: a python package for linking developmental phenotypes to omics features

Lissy-Anne M. Denkers , Marc D Galland , Annabel Dekker , Valerio Bianchi , Petra M Bleeker
Journal of Open Source Software, 2024, 9 (103), pp.7264. ⟨10.21105/joss.07264⟩
Article dans une revue hal-04835408 v1
Image document

Genetic and physiological requirements for high-level sesquiterpene-production in tomato glandular trichomes

Ruy Kortbeek , Marc Galland , Aleksandra Muras , Rodrigo Therezan , Sofia Maia et al.
Frontiers in Plant Science, 2023, 14, pp.1139274. ⟨10.3389/fpls.2023.1139274⟩
Article dans une revue hal-04220000 v1
Image document

ZNF91 deletion in human embryonic stem cells leads to ectopic activation of SVA retrotransposons and up-regulation of KRAB zinc finger gene clusters

Nina L Haring , Elisabeth J van Bree , Whitney S Jordaan , Judith R E Roels , Gonzalo Congrains Sotomayor et al.
Genome Research, 2021, 31, pp.551 - 563. ⟨10.1101/gr.265348.120⟩
Article dans une revue hal-04230100 v1
Image document

Natural variation in wild tomato trichomes; selecting metabolites that contribute to insect resistance using a random forest approach

Ruy W J Kortbeek , Marc D Galland , Aleksandra Muras , Frans M van der Kloet , Bart André et al.
BMC Plant Biology, 2021, 21, ⟨10.1186/s12870-021-03070-x⟩
Article dans une revue hal-04229877 v1
Image document

PlotXpress, a webtool for normalization and visualization of reporter expression data

Elias Brandorff , Marc Galland , Joachim Goedhart
F1000Research, 2021, 10, ⟨10.12688/f1000research.73641.1⟩
Article dans une revue hal-04229804 v1
Image document

A reproducible Snakemake pipeline to analyse Illumina paired-end data from ChiP-Seq experiments

Jihed Chouaref , Mattijs Bliek , Marc Galland
Journal of Open Source Software, 2019, 4, ⟨10.21105/joss.01465⟩
Article dans une revue hal-04379028 v1
Image document

Building a local community of practice in scientific programming for life scientists

Sarah L R Stevens , Mateusz Kuzak , Carlos Martinez , Aurelia Moser , Petra Bleeker et al.
PLoS Biology, 2018, 16, ⟨10.1371/journal.pbio.2005561⟩
Article dans une revue hal-04380718 v1
Image document

Small RNAs from Bemisia tabaci Are Transferred to Solanum lycopersicum Phloem during Feeding

Paula J M van Kleeff , Marc Galland , Robert C Schuurink , Petra M Bleeker
Frontiers in Plant Science, 2016, 7, ⟨10.3389/fpls.2016.01759⟩
Article dans une revue hal-04311188 v1
Image document

Regulation of mRNA translation controls seed germination and is critical for seedling vigor

Marc Galland , Loïc Rajjou
Frontiers in Plant Science, 2015, 6, pp.284. ⟨10.3389/fpls.2015.00284⟩
Article dans une revue hal-04464655 v1
Image document

Dynamic Proteomics Emphasizes the Importance of Selective mRNA Translation and Protein Turnover during Arabidopsis Seed Germination

Marc Galland , Romain Huguet , Erwann Arc , Gwendal Cueff , Dominique Job et al.
Molecular and Cellular Proteomics, 2014, 13 (1), pp.252-268. ⟨10.1074/mcp.M113.032227⟩
Article dans une revue hal-01204034 v1
Image document

The ethylene pathway contributes to root hair elongation induced by the beneficial bacteria Phyllobacterium brassicacearum STM196.

Marc Galland , Lydia Gamet , Fabrice Varoquaux , Brigitte Touraine , Bruno Touraine et al.
Plant Science, 2012, 190, pp.74-81. ⟨10.1016/j.plantsci.2012.03.008⟩
Article dans une revue istex hal-00776558 v1
Image document

Reboot the system thanks to protein post-translational modifications and proteome diversity: How quiescent seeds restart their metabolism to prepare seedling establishment

Erwann E. Arc , Marc Galland , Gwendal Cueff , Béatrice B. Godin-Pérénnez , Imen Lounifi Lounifi et al.
Proteomics, 2011, 11 (9), pp.1606-1618. ⟨10.1002/pmic.201000641⟩
Article dans une revue (article de synthèse) istex hal-01000719 v1
Image document

Effects of rhizobacterial ACC deaminase activity on Arabidopsis indicate that ethylene mediates local root responses to plant growth-promoting rhizobacteria

Céline Contesto , Guilhem Desbrosses , Cécile Lefoulon , Gilles Béna , Florie Borel et al.
Plant Science, 2008, 178 (1-2), pp.178-189. ⟨10.1016/j.plantsci.2008.01.020⟩
Article dans une revue istex hal-02668972 v1