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Integrative systems biology of wheat susceptibility to Fusarium graminearum uncovers a conserved gene regulatory network and identifies master regulators targeted by fungal core effectors
Florian Rocher
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A localized osmotic stress activates systemic responses to N-limitation in Medicago truncatula-Sinorhizobium symbiotic plants
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hal-04276739
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Plasticity QTLs specifically contribute to the genotype × water availability interaction in maize
Yacine Djabali
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Article dans une revue
hal-04002996
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Expression of cell-wall related genes is highly variable and correlates with sepal morphology
Diego A Hartasánchez
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hal-04248384
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A comprehensive map of preferentially located motifs reveals distinct proximal cis -regulatory elements in plants
Julien Rozière
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hal-04400803
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Analyzing Multifactorial RNA-Seq Experiments with DiCoExpress
Kevin Baudry
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Journal of visualized experiments : JoVE, 2022, 185, pp.e62566. ⟨10.3791/62566⟩
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hal-04274577
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Untargeted metabolomic analyses reveal the diversity and plasticity of the specialized metabolome in seeds of different Camelina sativa genotypes
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hal-03738690
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A cell wall-associated gene network shapes leaf boundary domains
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hal-03737566
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Fusarium graminearum infection strategy in wheat involves a highly conserved genetic program that controls the expression of a core effectome
Florian Rocher
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hal-03583788
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Systemic control of nodule formation by plant nitrogen demand requires autoregulation-dependent and independent mechanisms
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hal-03596911
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A case of gene fragmentation in plant mitochondria fixed by the selection of a compensatory restorer of fertility-like PPR gene
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hal-03236517
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Involvement of SUT1 and SUT2 Sugar Transporters in the Impairment of Sugar Transport and Changes in Phloem Exudate Contents in Phytoplasma-Infected Plants
Federica de Marco
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hal-02935915
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Error rate control for classification rules in multiclass mixture models
Tristan Mary-Huard
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hal-03357461
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DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models
Ilana Lambert
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Article dans une revue
hal-02921433
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Immediate targets of ETTIN suggest a key role for pectin methylesterase inhibitors in the control of Arabidopsis gynecium development
Amélie Andres Robin
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Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation
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Immune-focused multi-omics analysis of prostate cancer: leukocyte Ig-Like receptors are associated with disease progression
Benjamin Vittrant
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Responses of mature symbiotic nodules to the whole-plant systemic nitrogen signaling
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hal-02921428
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The Consequences of a Disruption in Cyto-Nuclear Coadaptation on the Molecular Response to a Nitrate Starvation in Arabidopsis
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hal-02959209
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Identification of a Transcriptomic Prognostic Signature by Machine Learning Using a Combination of Small Cohorts of Prostate Cancer
Benjamin Vittrant
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Article dans une revue
hal-03269716
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Gene expression predictions and networks in natural populations supports the omnigenic theory
Aurélien Chateigner
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hal-02902844
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Omics data reveal putative regulators of einkorn grain protein composition under sulfur deficiency
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hal-02553742
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Large-Scale Automatic Feature Selection for Biomarker Discovery in High-Dimensional OMICs Data
Mickael Leclercq
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Article dans une revue
hal-02623625
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In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi
Félix Lallemand
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Article dans une revue
hal-02617745
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Novel cytonuclear combinations modify Arabidopsis thaliana seed physiology and vigor
Clément Boussardon
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Article dans une revue
hal-02557423
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Sampling uncertainty versus method uncertainty: A general framework with applications to omics biomarker selection
Simon Klau
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Article dans une revue
hal-02618372
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A systems biology approach uncovers a gene co-expression network associated with cell wall degradability in maize
Clément Cuello
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hal-02429157
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Genetic variability of the phloem sap metabolite content of maize (Zea mays L.) during the kernel-filling period (vol 252, pg 347, 2016)
Zhazira Yesbergenova-Cuny
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Article dans une revue
hal-02618059
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Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat
Elodie Rey
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Miroslava Karafiatova
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Article dans une revue
hal-02621747
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Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo
Kaori Sakai
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Ludivine Taconnat
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Article dans une revue
hal-02625394
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Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways during ethephon stimulation and consequent Tapping Panel Dryness
Pascal Montoro
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hal-02624945
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Nitrogen limitation alters the response of specific genes to biotic stress
Mahsa Farjad
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Article dans une revue
hal-02625219
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Genetic variability of the phloem sap metabolite content of maize ([i]Zea mays[/i] L.) during the kernel-filling period
Zhazira Yesbergenova-Cuny
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Sylvie Dinant
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Marie-Laure Magniette
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Isabelle Quillere
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Patrick Armengaud
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Article dans une revue
hal-01363555
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Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis
Guillem Rigaill
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Article dans une revue
hal-01595551
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On the estimation of mixtures of Poisson regression models with large number of components
Panagiotis Papastamoulis
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Article dans une revue
hal-01532512
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Altered DNA methylation associated with an abnormal liver phenotype in a cattle model with a high incidence of perinatal pathologies
Hélène Kiefer
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hal-02633915
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Cytonuclear interactions affect adaptive traits of the annual plant Arabidopsis thaliana in the field
Fabrice Roux
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Proceedings of the National Academy of Sciences of the United States of America, 2016, 113 (13), pp.3687-3682. ⟨10.1073/pnas.1520687113⟩
Article dans une revue
hal-01294000
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Co-expression analysis of high-throughput transcriptome sequencing data with Poisson mixture models
Andrea Rau
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Marie-Laure Magniette
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Gilles Celeux
Article dans une revue
hal-01108821
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GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response
Rim Zaag
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Article dans une revue
hal-01137554
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Salmonella enterica Flagellin Is Recognized via FLS2 and Activates PAMP-Triggered Immunity in Arabidopsis thaliana
Ana Victoria Garcia Malervi
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Article dans une revue
hal-01197624
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Unexpectedly low nitrogen acquisition and absence of root architecture adaptation to nitrate supply in a [i]Medicago truncatula[/i] highly branched root mutant
Virginie Bourion
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Article dans une revue
hal-01197628
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Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences
Nicolas Frei Dit Frey
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Article dans une revue
hal-02631808
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Comparing Model Selection and Regularization Approaches to Variable Selection in Model-Based Clustering
Gilles Celeux
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Cathy Maugis
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Adrian E. Raftery
Journal de la Société Française de Statistique, 2014, 155 (2), pp.57-71
Article dans une revue
hal-00943473
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Hidden Markov Models with mixtures as emission distributions
Stevenn Volant
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Article dans une revue
hal-04609312
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The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana
Heike Lange
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hal-01197631
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Differential gene expression and metabolomic analyses of Brachypodium distachyon infected by deoxynivalenol producing and non-producing strains of Fusarium graminearum.
J.C. Pasquet
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hal-01063227
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Widespread anti-sense transcription in apple is correlated with siRNA production and indicates a large potential for transcriptional and/or post-transcriptional control
Jean-Marc Celton
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hal-01209978
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MultiChIPmixHMM: an R package for ChIP-chip data analysis modeling spatial dependencies and multiple replicates
Caroline Berard
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Marie-Laure Magniette
Article dans une revue
hal-01190745
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Genetic variability of berry size in grapevine (Vitis vinifera L.)
Cléa Houel
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Marie-Laure Magniette
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Stéphane D. Nicolas
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Thierry Lacombe
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Article dans une revue
hal-01223540
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Inférence de réseaux de régulation de gènes au travers de scores étendus dans les réseaux bayésiens
Jimmy Vandel
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Revue des Sciences et Technologies de l'Information - Série RIA : Revue d'Intelligence Artificielle, 2012, 26 (6), pp.679-708. ⟨10.3166/ria.26.679-708⟩
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hal-01197611
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A Light-Regulated Genetic Module Was Recruited to Carpel Development in Arabidopsis following a Structural Change to SPATULA
Matthieu Reymond
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hal-01003413
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SelvarClustMV: Variable selection approach in model-based clustering allowing for missing values
Cathy Maugis-Rabusseau
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Journal de la Société Française de Statistique, 2012, 15 (2), pp.21-36
Article dans une revue
hal-00972003
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A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments
David Rengel
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Article dans une revue
hal-02644423
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Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures
Francisco Cubillos
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hal-01189696
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Variational Bayes approach for model aggregation in unsupervised classification with Markovian dependency
Stevenn Volant
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hal-01000046
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Letter to the Editor
Gilles Celeux
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Journal of the American Statistical Association, 2011, 106, pp.383-383
Article dans une revue
hal-00944081
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Variable selection in model-based discriminant analysis
Cathy Maugis
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Marie-Laure Martin-Magniette
Article dans une revue
hal-00666826
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Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome
Patricia P. Faivre-Rampant
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hal-02646702
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Unsupervised Classification for Tiling Arrays: ChIP-chip and Transcriptome
Caroline Berard
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Veronique Brunaud
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Sebastien Aubourg
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Article dans une revue
hal-01190201
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Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids
Ali M. Banaei Moghaddam
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hal-02645621
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Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
François Roudier
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hal-04383147
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Letter to the editor: ''{A} framework for feature selection in clustering
Gilles Celeux
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Article dans une revue
hal-00666845
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Genomic approach to study floral development genes in Rosa sp.
Annick Dubois
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hal-00753396
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Transcriptomic Analysis Highlights Time-specific Embryonic Adaptation of Mice to the Lack of PrP
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hal-03339362
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Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes.
David Cohen
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Brain transcriptional stability upon prion protein-encoding gene invalidation in zygotic or adult mouse
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hal-01193445
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Identification of germinal disk region derived genes potentially involved in hen fertility
Sébastien Elis
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Article dans une revue
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hal-02666532
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Mélanges gaussiens bidimensionnels pour la comparaison de deux échantillons de chromatine immunoprécipitée
Caroline Berard
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La revue MODULAD, 2009, 40, pp.53-68
Article dans une revue
hal-01197565
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Sélection de variables pour la classification par mélanges gaussiens pour prédire la fonction des gènes orphelins
Cathy Maugis
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La revue MODULAD, 2009, 40, pp.69-80
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Estimation of the hazard function in a semiparametric model with covariate measurement error
Marie-Laure Martin-Magniette
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Article dans une revue
hal-04432752
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Transcriptome Analysis Describing New Immunity and Defense Genes in Peripheral Blood Mononuclear Cells of Rheumatoid Arthritis Patients
Vitor Hugo Teixeira
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Article dans une revue
hal-01197552
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Estimation of the hazard function in a semiparametric model with covariate measurement error
Marie-Laure Martin-Magniette
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Marie-Luce Taupin
Article dans une revue
hal-00480192
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ChIPmix: mixture model of regressions for two-color ChIP-chip analysis
Marie-Laure Magniette
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Caroline Berard
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Stephane Robin
Article dans une revue
hal-01197653
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Differential gene expression of the honey bee Apis mellifera associated with Varroa destructor infection
Maria Navajas
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C. Alaux
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Article dans une revue
hal-02659274
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Normalization for triple-target microarray experiments
Marie-Laure Magniette
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Article dans une revue
hal-01197566
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Transcriptional and Metabolic Adjustments in ADP-Glucose pyrophosphorylase -deficient bt2 Maize kernels
Magalie Cossegal
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S. Balzergue
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Article dans une revue
hal-00412597
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Systemic Signaling of the Plant Nitrogen Status Triggers Specific Transcriptome Responses Depending on the Nitrogen Source in Medicago truncatula.
Sandrine Ruffel
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Article dans une revue
hal-00275798
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CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform
Séverine Gagnot
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Frederique Bitton
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Article dans une revue
hal-01203869
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Search for the genes involved in oocyte maturation and early embryo development in the hen
Sébastien Elis
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Article dans une revue
hal-02666483
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Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5
Moussa Benhamed
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Article dans une revue
hal-02659090
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Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome
Sebastien S. Aubourg
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Marie-Laure Martin-Magniette
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Veronique V. Brunaud
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Ludivine Taconnat
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Frederique Bitton
et al.
Article dans une revue
hal-02668276
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Arabidopsis TFL2/LHP1 Specifically Associates with Genes Marked by Trimethylation of Histone H3 Lysine 27
Franziska Turck
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François Roudier
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Sara Farrona
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Marie-Laure Martin-Magniette
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Elodie Guillaume
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Article dans une revue
hal-02663914
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Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance.
Fanny Ramel
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Cécile Sulmon
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Francisco Cabello-Hurtado
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Ludivine Taconnat
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Marie-Laure Martin-Magniette
et al.
Article dans une revue
hal-00264268
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Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis
Fabien Jammes
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Philippe Lecomte
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Janice de Almeida Engler
,
Frederique Bitton
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Marie-Laure Martin-Magniette
et al.
Article dans une revue
hal-02682347
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Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
Claire Lurin
,
Charles Andres
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Sebastien Aubourg
,
M. Bellaoui
,
Frédérique Bitton
et al.
The Plant cell, 2004, 16 (7), pp.1-15
Article dans une revue
hal-02679636
v1
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