Marie Mirouze

Directrice de Recherche IRD
47
Documents

Publications

Publications

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Detection of transcriptomic structural variations in wild rice using Nanopore direct RNA sequencing.

Marie-Christine Carpentier , Christel Llauro , Eric Lasserre , Marie Mirouze , Rod A. Wing et al.

JOBIM 2024: JOURNéES OUVERTES DE BIOLOGIE, INFORMATIQUE ET MATHéMATIQUES 2024, Jun 2024, TOULOUSE Université Paul Sabatier, France

Poster de conférence hal-04919310v1
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TEs as a major driver of genomic variation in trees ? Jumping MITEs in common beech revealed by TIPs and eccDNA

Abirami Soundiramourtty , Lauren Clement , Christel Llauro , Olivier Panaud , Christophe Plomion et al.

ICTE 2024 - International Congress on Transposable Elements, Apr 2024, Saint Malo, France.

Poster de conférence hal-04907176v1
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Clarifying the role of DNA methylation in tree phenotypic plasticity

Mamadou Dia Sow , Anne-Laure Le Gac , Clément Lafon Placette , Alain Delaunay , Isabelle Le Jan et al.

43. FEBS Congress, Biochemistry Forever, Jul 2018, Prague, Czech Republic. FEBS Open Bio, 8 (supplément S1), 2018, Supplément 43rd FEBS Congress, Biochemistry Forever, Prague, Czech Republic, July 7‐12, 2018

Poster de conférence hal-02736952v1
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Integration and Visualization of Epigenome and Mobilome Data in Crops

Dagmara Robakowska Hyzorek , Marie Mirouze , Pierre Larmande

JOBIM: Journées Ouvertes Biologie Informatique Mathématiques, Jun 2016, Lyon, France. , 2016

Poster de conférence hal-01411668v1
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Drought-induced acclimation of DNA-hypomethylated poplars

Anne-Laure Le Gac , Régis R. Fichot , Marie Mirouze , Vincent Segura , Alain Delaunay et al.

IUFRO Genomics and Forest Tree Genetics, May 2016, Arcachon, France. , 2016, IUFRO Genomics and Forest Tree Genetics. Abstract book

Poster de conférence hal-02742078v1

Plant genome stability and extrachromosomal circular DNA (eccDNA): vicious or virtuous circle?

Marie Mirouze , Abirami Soundiramourtty , Christel Llauro , Assane Mbodj , Panpan Zhang et al.

International Congress on Transposable Elements, GDR Elements transposables, Apr 2024, Saint Malo (FR), France

Communication dans un congrès hal-04907186v1

Extrachromosomal circular DNA (eccDNA) and structural variants highlight genome instability in Arabidopsis epigenetic mutants

Marie Mirouze , Panpan Zhang , Abirami Soundiramourtty , Christel Llauro , Assane Mbodj et al.

FORUM Labex TULIP, Labex TULIP (Towards a Unified Theory of Biotic Interactions: roLe of environmental Perturbations); FR AIB (Fédération de Recherche Agrobiosciences, Interactions et Biodiversité), Oct 2023, Toulouse, France

Communication dans un congrès hal-04907206v1

All you ever wanted to know about about extrachromosomal circular DNA (and never dared to ask!)

Marie Mirouze

"Pushing Boundaries", Vienna BioCenter PhD symposium, Nov 2022, Vienna ( virtual ), Austria

Communication dans un congrès hal-04908153v1

Epigenetic control of genome stability in Arabidopsis thaliana

Marie Mirouze

Epigenetic Mechanisms of Crop Adaptation to Climate Change, EpiCatch, Jul 2021, Virtual conference, France

Communication dans un congrès hal-04908163v1

Using long-read nanopore sequencing to unravel structural genomic variations in plants

Marie-Christine Carpentier , Hshin-Ping Wu , Fu-Jin Wei , Christel Llauro , Marie Mirouze et al.

Nanopore London Calling 2019, Oxford Nanopore, May 2019, Londres (UK), United Kingdom

Communication dans un congrès hal-04919461v1

Combining mobilome-seq and de novo genome assemblies to reveal TE dynamics in plant populations

Marie Mirouze , Sophie Lanciano , Christel Llauro , Panpan Zhang

International symposium EPI/GENETICS from basic research to plant breeding, INRAE, Oct 2018, Angers, France

Communication dans un congrès hal-04908183v1

Sequencing mobilome reveals real time transposable element activity in plants and animals

Marie Mirouze , Sophie Lanciano , Sophie Lanciano , Marie-Christine Carpentier , Christel Llauro et al.

Conference on Epigenetic & Chromatin Regulation of Plant Traits, EpiTRAITS, Jan 2016, Strasbourg, France

Communication dans un congrès hal-04908203v1

Mobilome sequencing reveals real time transposable element activity in plants

Marie Mirouze , Sophie Lanciano , Marie-Christine Carpentier , Christel Llauro , Alain Ghesquiere

ICTE 2016, GDR Elements transposables, Apr 2016, Saint Malo, France

Communication dans un congrès hal-04908135v1

Epigenetic control of plant mobilomes

Marie Mirouze

Keystone Symposium on RNA Silencing in Plants, Keystone Symposium, Feb 2015, Keystone - Colorado, United States

Communication dans un congrès hal-04908110v1
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45S rDNA Diversity In Natura as One Step towards Ribosomal Heterogeneity in Arabidopsis thaliana

Valérie Delorme-Hinoux , Assane Mbodj , Sophie Brando , Anne de Bures , Christel Llauro et al.

Plants, 2023, 12 (14), pp.2722. ⟨10.3390/plants12142722⟩

Article dans une revue hal-04270325v1
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Editorial: Plant epigenetics and chromatin dynamics - EPIPLANT 2021-2022

Guillaume Moissiard , Marie Mirouze , Cristel Carles , Clémentine Vitte

Frontiers in Plant Science, 2023, 14, ⟨10.3389/fpls.2023.1260391⟩

Article dans une revue hal-04305976v1
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Extrachromosomal circular DNA and structural variants highlight genome instability in Arabidopsis epigenetic mutants

P. Zhang , Assane Mbodj , A. Soundiramourtty , C. Llauro , Alain Ghesquière et al.

Nature Communications, 2023, 14, pp.5236. ⟨10.1038/s41467-023-41023-0⟩

Article dans une revue hal-04192599v1
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Extrachromosomal circular DNA and structural variants highlight genome instability in Arabidopsis epigenetic mutants

Panpan Zhang , Assane Mbodj , Abirami Soundiramourtty , Christel Llauro , Alain Ghesquière et al.

Nature Communications, 2023, 14 (1), pp.5236. ⟨10.1038/s41467-023-41023-0⟩

Article dans une revue hal-04766500v1
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Genome-wide analysis of horizontal transfer in non-model wild species from a natural ecosystem reveals new insights into genetic exchange in plants

Emilie Aubin , Christel Llauro , Joseph Garrigue , Marie Mirouze , Olivier Panaud et al.

PLoS Genetics, 2023, 19 (10), pp.e1010964. ⟨10.1371/journal.pgen.1010964⟩

Article dans une revue hal-04274792v1
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ANCHOR: A Technical Approach to Monitor Single-Copy Locus Localization in Planta

Anis Meschichi , Mathieu Ingouff , Claire Picart , Marie Mirouze , Sophie Desset et al.

Frontiers in Plant Science, 2021, 12, pp.677849. ⟨10.3389/fpls.2021.677849⟩

Article dans une revue hal-03313521v1
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RNAi suppression of DNA methylation affects the drought stress response and genome integrity in transgenic poplar

Mamadou D. Sow , Anne‐laure Le Gac , Régis Fichot , Sophie Lanciano , Alain Delaunay et al.

New Phytologist, 2021, 232 (1), pp.80-97. ⟨10.1111/nph.17555⟩

Article dans une revue hal-03292338v1
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Large tandem duplications affect gene expression, 3D organization, and plant–pathogen response

Ariadna Picart-Picolo , Stefan Grob , Nathalie Picault , Michal Franek , Christel Llauro et al.

Genome Research, In press, ⟨10.1101/gr.261586.120⟩

Article dans une revue hal-02962580v1
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The genome sequence of segmental allotetraploid peanut Arachis hypogaea

David Bertioli , Jerry Jenkins , Josh Clevenger , Olga Dudchenko , Dongying Gao et al.

Nature Genetics, 2019, 51 (5), pp.877-884. ⟨10.1038/s41588-019-0405-z⟩

Article dans une revue hal-02141867v1

Dicer-like and RNA-dependent RNA polymerase gene family identification and annotation in the cultivated Solanum tuberosum and its wild relative S. commersonii

Salvatore Esposito , Riccardo Aversano , Vincenzo D’amelia , Clizia Villano , Daniela Alioto et al.

Planta, 2018, 248 (3), pp.729-743. ⟨10.1007/s00425-018-2937-3⟩

Article dans une revue hal-02098547v1
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Dicer-2-Dependent Generation of Viral DNA from Defective Genomes of RNA Viruses Modulates Antiviral Immunity in Insects

Enzo Poirier , Bertsy Goic , Lorena Tomé-Poderti , Lionel Frangeul , Jeremy Boussier et al.

Cell Host and Microbe, 2018, 23 (3), pp.353-365.e8. ⟨10.1016/j.chom.2018.02.001⟩

Article dans une revue pasteur-01952531v1
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The somatic piRNA pathway controls germline transposition over generations

Bridlin Barckmann , Marianne El-Barouk , Alain Pélisson , Bruno Mugat , Blaise Maxime Li et al.

Nucleic Acids Research, 2018, 46 (18), pp.9524 - 9536. ⟨10.1093/nar/gky761⟩

Article dans une revue hal-01904679v1

Transposable elements: all mobile, all different, some stress responsive, some adaptive?

Sophie Lanciano , Marie Mirouze

Current Opinion in Genetics and Development, 2018, 49, pp.106-114. ⟨10.1016/j.gde.2018.04.002⟩

Article dans une revue istex hal-02098540v1
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Ecological plant epigenetics: Evidence from model and non-model species, and the way forward

Christina Richards , Conchita Alonso , Claude Becker , Oliver Bossdorf , Etienne Bucher et al.

Ecology Letters, 2017, 20 (12), pp.1576-1590. ⟨10.1111/ele.12858⟩

Article dans une revue hal-02098587v1
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Inhibition of RNA polymerase II allows controlled mobilisation of retrotransposons for plant breeding

Michael Thieme , Sophie Lanciano , Sandrine Balzergue , Nicolas Daccord , Marie Mirouze et al.

Genome Biology, 2017, 18 (1), pp.1-10. ⟨10.1186/s13059-017-1265-4⟩

Article dans une revue hal-02098596v1
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Detection of active transposable elements in Arabidopsis thaliana using Oxford Nanopore Sequencing technology

Emilie Debladis , Christel Llauro , Marie-Christine Carpentier , Marie Mirouze , Olivier Panaud

BMC Genomics, 2017, 18, art. 537 [8 p.]. ⟨10.1186/s12864-017-3753-zg⟩

Article dans une revue ird-01626046v1
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Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants

Sophie Lanciano , Marie-Christine Carpentier , Christel Llauro , Edouard Jobet , Dagmara Robakowska-Hyzorek et al.

PLoS Genetics, 2017, 13 (2), pp.e1006630. ⟨10.1371/journal.pgen.1006630⟩

Article dans une revue hal-02098598v1
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DNA Methylation in Rice and Relevance for Breeding

Sophie Lanciano , Marie Mirouze

Epigenomes, 2017, 1 (2), pp.10. ⟨10.3390/epigenomes1020010⟩

Article dans une revue hal-02098591v1

Adaptation to Global Change: A Transposable Element–Epigenetics Perspective

Olivier REY , Etienne Danchin , Marie Mirouze , Celine Loot , Simon Blanchet

Trends in Ecology & Evolution, 2016, 31 (7), pp.514-526. ⟨10.1016/j.tree.2016.03.013⟩

Article dans une revue istex hal-02099870v1

Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes

M. Mirouze , C. Vitte

Journal of Experimental Botany, 2014, 65 (10), pp.2801-2812. ⟨10.1093/jxb/eru120⟩

Article dans une revue hal-03222994v1

Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes

M. Mirouze , C. Vitte

Journal of Experimental Botany, 2014, 65 (10), pp.2801-2812. ⟨10.1093/jxb/eru120⟩

Article dans une revue hal-04305941v1
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Widespread and frequent horizontal transfers of transposable elements in plants.

Moaine El Baidouri , Marie-Christine Carpentier , Richard Cooke , Dongying Gao , Eric Lasserre et al.

Genome Research, 2014, 24 (5), pp.831-8. ⟨10.1101/gr.164400.113⟩

Article dans une revue hal-01218140v1
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Epigenetic regulation of adaptive responses of forest tree species to the environment

Katharina Braeutigam , Kelly J. Vining , Clément Lafon-Placette , Carl G. Fossdal , Marie Mirouze et al.

Ecology and Evolution, 2013, 3 (2), pp.399 - 415. ⟨10.1002/ece3.461⟩

Article dans une revue hal-02650711v1

Selective epigenetic control of retrotransposition in Arabidopsis

Marie Mirouze , Jon Reinders , Etienne Bucher , Taisuke Nishimura , Korbinian Schneeberger et al.

Nature, 2009, 461 (7262), pp.427 - 430. ⟨10.1038/nature08328⟩

Article dans une revue istex hal-01917183v1

Construction and characterisation of a BAC library from Arabidopsis halleri: evaluation of physical mapping based on conserved synteny with A. thaliana.

Eric Lacombe , Magalie Cossegal , Marie Mirouze , Adam Thibaud , Fabrice Varoquaux et al.

Plant Science, 2008, 174 (6), pp.634-640. ⟨10.1016/j.plantsci.2008.03.020⟩

Article dans une revue istex hal-00281372v1

A putative novel role for plant defensins: a defensin from the zinc hyperaccumulating plant, Arabidopsis halleri, confers zinc tolerance.

M. Mirouze , J. Sels , O. Richard , P. Czernic , S. Loubet et al.

The Plant Journal, 2006, 47, pp.329-342. ⟨10.1111/j.1365-313X.2006.02788.x⟩

Article dans une revue hal-00087164v1

Identification of extrachromosomal circular forms of active transposable elements using mobilome-seq

S. Lanciano , Panpan Zhang , C. Llauro , Marie Mirouze

Cho, Jungnam (ed.). Plant transposable elements : methods and protocols, 2250, Humana Press - Springer, pp.87-93, 2021, Methods in Molecular Biology, 978-1-0716-1133-3. ⟨10.1007/978-1-0716-1134-0_7⟩

Chapitre d'ouvrage hal-03674607v1

Aspects of Epigenetic Regulation in Cereals

Omar Oltehua-Lopez , Ana Dorantes-Acosta , Mathieu Ingouff , Sophie Lanciano , Olivier Leblanc et al.

Plant Epigenetics Coming of Age for Breeding Applications, pp.361-386, 2018, ⟨10.1016/bs.abr.2018.10.004⟩

Chapitre d'ouvrage hal-02098511v1

Preface

Philippe Gallusci , Etienne Bucher , Marie Mirouze

Plant Epigenetics Coming of Age for Breeding Applications, 88, Academic Press, Amsterdam(NLD), pp.XV-XVIII, 2018, Advances in Botanical Research, 9780128154038. ⟨10.1016/S0065-2296(18)30083-1⟩

Chapitre d'ouvrage hal-02539614v1