MARTINE DA ROCHA

Ingénieure Bioinformatique
36
Documents

Publications

Publications

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Unzipped genome assemblies of polyploid root-knot nematodes reveal unusual and clade-specific telomeric repeats

Ana Paula Zotta Mota , Georgios Koutsovoulos , Laetitia Perfus-Barbeoch , Evelin Despot-Slade , Karine Labadie et al.

Nature Communications, 2024, 15 (1), pp.773. ⟨10.1038/s41467-024-44914-y⟩

Article dans une revue hal-04489824v1
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Invasion of the stigma by oomycete pathogenic hyphae or pollen tubes: striking similarities and differences

Lucie Riglet , Sophie Hok , Naïma Kebdani-Minet , Joëlle Le Berre , Mathieu Gourgues et al.

Journal of Experimental Botany, 2024, 75 (20), pp.6258-6274. ⟨10.1093/jxb/erae308⟩

Article dans une revue (article de synthèse) hal-04779975v1

AUXIN RESPONSIVE FACTOR8 regulates development of the feeding site induced by root-knot nematodes in tomato

Yara Noureddine , Martine da Rocha , Jing An , Clémence Médina , Joffrey Mejias et al.

Journal of Experimental Botany, 2023, 74 (18), pp.5752-5766. ⟨10.1093/jxb/erad208⟩

Article dans une revue hal-04617469v1
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Root-associated microbiota drive phytoremediation strategies to lead of Sonchus Asper (L.) Hill as revealed by intercropping-induced modifications of the rhizosphere microbiome

Xinyue Mei , Ying Wang , Zuran Li , Marie Larousse , Arthur Péré et al.

Environmental Science and Pollution Research, 2022, 29 (16), pp.23026-23040. ⟨10.1007/s11356-021-17353-1⟩

Article dans une revue hal-04617452v1
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Copper microRNAs modulate the formation of giant feeding cells induced by the root knot nematode Meloidogyne incognita in Arabidopsis thaliana

Yara Noureddine , Joffrey Mejias , Martine da Rocha , Sébastien Thomine , Michaël Quentin et al.

New Phytologist, 2022, 236 (1), pp.283-295. ⟨10.1111/nph.18362⟩

Article dans une revue hal-03866626v1
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Genome Expression Dynamics Reveal the Parasitism Regulatory Landscape of the Root-Knot Nematode Meloidogyne incognita and a Promoter Motif Associated with Effector Genes

Martine da Rocha , Caroline Bournaud , Julie Dazenière , Peter Thorpe , Marc Bailly-Bechet et al.

Genes, 2021, 12 (5), pp.771. ⟨10.3390/genes12050771⟩

Article dans une revue hal-04617459v1
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Movements of transposable elements contribute to the genomic plasticity and species diversification in an asexually reproducing nematode pest

Djampa Kozlowski , Rahim Hassanaly-Goulamhoussen , Martine da Rocha , Georgios Koutsovoulos , Marc Bailly-Bechet et al.

Evolutionary Applications, 2021, 14 (7), pp.1844-1866. ⟨10.1111/eva.13246⟩

Article dans une revue hal-04617465v1
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The molecular signatures of compatible and incompatible pollination in Arabidopsis

Chie Kodera , Jérémy Just , Martine Da Rocha , Antoine Larrieu , Lucie Riglet et al.

BMC Genomics, 2021, 22 (1), ⟨10.1186/s12864-021-07503-7⟩

Article dans une revue hal-03299108v1
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Chromatin landscape dynamics in the early development of the plant parasitic nematode Meloidogyne incognita

Rahim Hassanaly-Goulamhoussen , Ronaldo de Carvalho Augusto , Nathalie Marteu-Garello , Arthur Péré , Bruno Favery et al.

Frontiers in Cell and Developmental Biology, 2021, 9, pp.765690. ⟨10.3389/fcell.2021.765690⟩

Article dans une revue hal-03467409v2
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Genome assembly and annotation of Meloidogyne enterolobii, an emerging parthenogenetic root- knot nematode

Georgios Koutsovoulos , Marine Poullet , Abdelnaser Elashry , Erika Sallet , Martine da Rocha et al.

Scientific Data , 2020, 7 (1), pp.324. ⟨10.1038/s41597-020-00666-0⟩

Article dans une revue (data paper) hal-02972492v1
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Characterization of Two Satellite DNA Families in the Genome of the Oomycete Plant Pathogen Phytophthora parasitica

Franck Panabières , Corinne Rancurel , Martine da Rocha , Marie-Line Kuhn

Frontiers in Genetics, 2020, 11, ⟨10.3389/fgene.2020.00557⟩

Article dans une revue hal-04080520v1

Gene copy number variations as signatures of adaptive evolution in the parthenogenetic, plant-parasitic nematode <em>Meloidogyne incognita</em>

Philippe Castagnone-Sereno , Karine Mulet , Etienne Danchin , Georgios D. Koutsovoulos , Mégane Karaulic et al.

Molecular Ecology, 2019, 28 (10), pp.2559-2572. ⟨10.1111/mec.15095⟩

Article dans une revue hal-02629335v1
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Genome-wide expert annotation of the epigenetic machinery of the plant-parasitic nematodes <em>Meloidogyne</em> spp., with a focus on the asexually reproducing species

Loris Pratx , Corinne Rancurel , Martine da Rocha , Etienne Danchin , Philippe Castagnone-Sereno et al.

BMC Genomics, 2018, 19, pp.1-21. ⟨10.1186/s12864-018-4686-x⟩

Article dans une revue hal-02626482v1

A root-knot nematode small glycine and cysteine-rich secreted effector, MiSGCR1, is involved in plant parasitism

Chinh-Nghia Nguyen , Laetitia Perfus-Barbeoch , Michaël Quentin , Jianlong Zhao , Marc Magliano et al.

New Phytologist, 2018, 217 (2), pp.687-699. ⟨10.1111/nph.14837⟩

Article dans une revue hal-02621877v1
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Characterization of siRNAs clusters in <em>Arabidopsis thaliana</em> galls induced by the root-knot nematode <em>Meloidogyne incognita</em>

Clémence Medina , Martine da Rocha , Marc Magliano , Alizée Raptopoulo , Nathalie Marteu et al.

BMC Genomics, 2018, 19, ⟨10.1186/s12864-018-5296-3⟩

Article dans une revue hal-02628557v1
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Hybridization and polyploidy enable genomic plasticity without sex in the most devastating plant-parasitic nematodes

Romain Blanc-Mathieu , Laetitia Zurletto , Jean-Marc Aury , Martine da Rocha , Jerome Gouzy et al.

PLoS Genetics, 2017, 13 (6), pp.e1006777. ⟨10.1371/journal.pgen.1006777⟩

Article dans une revue hal-01602779v1

Characterization of microRNAs from Arabidopsis galls highlights a role for miR159 in the plant response to the root-knot nematode Meloidogyne incognita

Clémence Medina , Martine da Rocha , Marc Magliano , Alizée Ratpopoulo , Benoît Revel et al.

New Phytologist, 2017, 216 (3), pp.882-896. ⟨10.1111/nph.14717⟩

Article dans une revue hal-03148728v1
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The transcriptomes of <em>Xiphinema index</em> and <em>Longidorus elongatus</em> Suggest Independent acquisition of some plant parasitism genes by horizontal gene transfer in early-branching nematodes

Etienne G J. Danchin , Laetitia Perfus-Barbeoch , Corinne Rancurel , Peter Thorpe , Martine da Rocha et al.

Genes, 2017, 8 (10), ⟨10.3390/genes8100287⟩

Article dans une revue hal-02624204v1

Transcriptome Profiling of Neurosensory Perception Genes in Wing Tissue of Two Evolutionary Distant Insect Orders: Diptera (<em>Drosophila melanogaster</em>)<em></em>) and Hemiptera (<em>Acyrthosiphon pisum</em>)

Sandra Agnel , Martine da Rocha , Alain Robichon

Journal of Molecular Evolution, 2017, 85 (5-6), pp.234 - 245. ⟨10.1007/s00239-017-9814-8⟩

Article dans une revue hal-02620001v1
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The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence

Sebastian Eves-van Den Akker , Dominik R. Laetsch , Peter Thorpe , Catherine J. Lilley , Etienne G. J. Danchin et al.

Genome Biology, 2016, 17 (1), pp.1-23. ⟨10.1186/s13059-016-0985-1⟩

Article dans une revue hal-01439090v1
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Nod Factor Effects on Root Hair-Specific Transcriptome of Medicago truncatula: Focus on Plasma Membrane Transport Systems and Reactive Oxygen Species Networks.

Isabelle Damiani , Alice Drain , Marjorie Guichard , Sandrine Balzergue , Alexandre Boscari et al.

Frontiers in Plant Science, 2016, 7, pp.794. ⟨10.3389/fpls.2016.00794⟩

Article dans une revue hal-01354648v1

Root-knot nematodes pan-genomics reveals novel target genes for safer and more specific control

Etienne Danchin , Marie Jeanne Arguel , Amandine Fournier , Laetitia Perfus-Barbeoch , Marc Magliano et al.

Journal of Nematology, 2014, 46 (2), pp.150

Article dans une revue hal-01269022v1
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Environmentally selected aphid variants in clonality context display differential patterns of methylation in the genome

Claude Pasquier , Mathilde Clément , Aviv Dombrovsky , Stéphanie Penaud , Martine da Rocha et al.

PLoS ONE, 2014, 9 (12), pp.e115022. ⟨10.1371/journal.pone.0115022⟩

Article dans une revue hal-01151509v1
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Identification of novel target genes for safer and more specific control of root-knot nematodes from a pan-genome mining

Etienne Danchin , Marie Jeanne Arguel , Amandine Fournier , Laetitia Zurletto , Marc Magliano et al.

PLoS Pathogens, 2013, 9 (10), pp.1-15. ⟨10.1371/journal.ppat.1003745⟩

Article dans une revue hal-01137164v1
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Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga

Jean-François Flot , Boris Hespeels , Xiang Li , Benjamin Noel , Irina Arkhipova et al.

Nature, 2013, 500 (7463), pp.453-457. ⟨10.1038/nature12326⟩

Article dans une revue hal-01282538v1
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Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes.

Julien Paganini , Amandine Campan-Fournier , Martine da Rocha , Philippe Gouret , Pierre Pontarotti et al.

PLoS ONE, 2012, 7 (11), pp.e50875. ⟨10.1371/journal.pone.0050875⟩

Article dans une revue hal-00831026v1
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The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals in-sights into the bases of parasitism and virulence

S. Eves-van den Akker , D. R. Laetsch , P. Thorpe , C. J. Lilley , Etienne Danchin et al.

Joint Meeting of the Society of Nematologists and the Organization of Nematologists of Tropical America (ONTA), 2016, Jul 2016, Montréal, Canada. 387 p

Communication dans un congrès hal-01604220v1

Evolution of the genetic load in invasive insects: insights from a genomic cross-species study

Eric Lombaert , Andréa Beaumé , Aurélie Blin , Martine Da Rocha , Mathieu Gautier et al.

Congress of the European Society for Evolutionary Biology (ESEB 2025), Aug 2025, Barcelona, Spain. , pp.P01.053

Poster de conférence hal-05226015v1
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Comparison of the PacBio 2.0 and 3.0 kits for full length mRNA sequencing in multiplex

Marine Sallaberry , Eden Darnige , Lucien Hoffbeck , Sandra Fourre , Mathis Pochon et al.

Assemblée Générale France Génomique, Jun 2023, Paris, France

Poster de conférence hal-04150252v1
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Insect invaders analysis pipeline: what happens to the genetic load when alien species become invasive?

Barbara Porro , Mathieu Zallio , Emeline Deulery , Aurélie Blin , Mathieu Gautier et al.

Les Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2023, Nice, France

Poster de conférence hal-05261289v1

Isolation of candidates effectors secreted by the fungal pathogen Fusarium graminearum in the early stages of FHB disease on wheat.

Philippe Lecomte , Christelle El Hajj Assaf , Martine da Rocha , Cherif Chetouhi , Olivier Soudière et al.

Effectome Network, Sep 2013, Lauret, France. 2013

Poster de conférence hal-02750292v1

Identification of effectors secreted by the fungal pathogen Fusarium graminearum, main causal agent of FHB on wheat

Philippe Lecomte , Christelle El Hajj Assaf , Martine da Rocha , Cherif Chetouhi , Etienne Danchin et al.

Plant Resistance Sustainability 2012 International Conference, Oct 2012, la colle sur loup, France. , 2012, International Conference on Plant Resistance Sustainability 2012

Poster de conférence hal-02749942v1