Mathieu Emily

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Publications

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Machine Learning for predicting industrial performance: example of the dry matter content of Emmental-type cheese

Manon Perrignon , Mathieu Emily , Mélanie Munch , Romain Jeantet , Thomas Croguennec
International Dairy Journal, In press, 162, pp.106143. ⟨10.1016/j.idairyj.2024.106143⟩
Article dans une revue hal-04802584 v2
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Spatial patterns of causality in temperate silvopastoral systems: a perspective on nitrification stability in response to flooding

Romane Mettauer , Mathieu Emily , Zita Bednar-Konski , Anaïs Widmer , Olivier Godinot et al.
Ecological Processes, 2024, 13 (1), pp.66. ⟨10.1186/s13717-024-00538-0⟩
Article dans une revue hal-04698408 v1

The multi-objective data-driven approach: A route to drive performance optimization in the food industry

Manon Perrignon , Thomas Croguennec , Romain Jeantet , Mathieu Emily
Trends in Food Science and Technology, 2024, 152, pp.104697. ⟨10.1016/j.tifs.2024.104697⟩
Article dans une revue hal-04703408 v1

Adaptive Handling of Dependence in High-Dimensional Regression Modeling

Florian Hébert , David Causeur , Mathieu Emily
Journal of Computational and Graphical Statistics, 2023, 32 (1), pp.213-225. ⟨10.1080/10618600.2022.2076687⟩
Article dans une revue hal-04047707 v1
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Omnibus testing approach for gene‐based gene‐gene interaction

Florian Hébert , David Causeur , Mathieu Emily
Statistics in Medicine, 2022, 41 (15), ⟨10.1002/sim.9389⟩
Article dans une revue hal-03629259 v1
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Forecasting Staphylococcus aureus Infections Using Genome-Wide Association Studies, Machine Learning, and Transcriptomic Approaches

Mohamed Sassi , Julie Bronsard , Gaetan Pascreau , Mathieu Emily , Pierre-Yves Donnio et al.
mSystems, 2022, 7 (4), pp.article n° : 00378-22. ⟨10.1128/msystems.00378-22⟩
Article dans une revue hal-03728161 v1

A field indicator for rhizosphere effect monitoring in arable soils

Sébastian Mira , Mathieu Emily , Christophe Mougel , Morgane Ourry , Edith Le Cadre-Barthélemy
Plant and Soil, 2022, 478, pp.325-346. ⟨10.1007/s11104-021-05284-2⟩
Article dans une revue hal-03524069 v1
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An adaptive decorrelation procedure for signal detection

Florian Hébert , David Causeur , Mathieu Emily
Computational Statistics and Data Analysis, 2021, 153, pp.107082. ⟨10.1016/j.csda.2020.107082⟩
Article dans une revue hal-02938672 v1
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Comparison of Activity Monitors Accuracy in Assessing Intermittent Outdoor Walking

Aline Taoum , Ségolène Chaudru , Pierre-Yves de Müllenheim , Florian Congnard , Mathieu Emily et al.
Medicine and Science in Sports and Exercise, 2021, 53 (6), pp.1303-1314. ⟨10.1249/MSS.0000000000002587⟩
Article dans une revue hal-03190738 v1
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Galleria mellonella Larvae as an Infection Model to Investigate sRNA-Mediated Pathogenesis in Staphylococcus aureus

Guillaume Ménard , Astrid Rouillon , Gevorg Ghukasyan , Mathieu Emily , Brice Felden et al.
Frontiers in Cellular and Infection Microbiology, 2021, 11, pp.article n° 631710. ⟨10.3389/fcimb.2021.631710⟩
Article dans une revue hal-03227385 v1
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Should I stay or should I go now?Recovery time effect on walking capacity in symptomatic peripheral artery disease

Pierre-Yves de Müllenheim , Laurent Rouvière , Mathieu Emily , Ségolène Chaudru , Adrien Kaladji et al.
Journal of Applied Physiology Respiratory Environmental and Exercise Physiology, 2021, 131 (1), pp.207-219. ⟨10.1152/japplphysiol.00441.2020⟩
Article dans une revue hal-03246582 v1
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Gene-Based Methods to Detect Gene-Gene Interaction in R : The GeneGeneInteR Package

Mathieu Emily , Nicolas Sounac , Florian Kroell , Magalie Houée-Bigot
Journal of Statistical Software, 2020, 95 (12), pp.1-32. ⟨10.18637/jss.v095.i12⟩
Article dans une revue hal-02997454 v2
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Impact of human milk pasteurization on the kinetics of peptide release during in vitro dynamic digestion at the preterm newborn stage

Amélie Deglaire , Samira Cassia de Oliveira , Julien Jardin , Valérie Briard-Bion , Florian Kroell et al.
Food Chemistry, 2019, 281, pp.294-303. ⟨10.1016/j.foodchem.2018.12.086⟩
Article dans une revue hal-01984298 v1
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A Mutual Information-based method to select informative pairs of variables in case-control genetic association studies to improve the power of detecting interaction between genetic variants

Mathieu Emily , Chloé Friguet
Journal de la Société Française de Statistique, 2018, 152 (2), pp.84-110
Article dans une revue hal-01880547 v1
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A survey of statistical methods for gene-gene interaction in case-control genome-wide association studies

Mathieu Emily
Journal de la Société Française de Statistique, 2018, 159 (1), pp.27-67
Article dans une revue hal-01837971 v1
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Toward Haptic Communication: Tactile Alphabets Based on Fingertip Skin Stretch

Yoren Gaffary , Ferran Argelaguet Sanz , Maud Marchal , Adrien Girard , Florian Gosselin et al.
IEEE Transactions on Haptics (ToH), 2018, 11 (4), pp.636-645. ⟨10.1109/TOH.2018.2855175⟩
Article dans une revue hal-01839061 v1
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Using GPS, accelerometry and heart rate to predict outdoor graded walking energy expenditure

Pierre-Yves de Müllenheim , S. Chaudru , Mathieu Emily , Marie Gernigon , G Mahé et al.
Journal of Science and Medicine in Sport, 2018, 21 (2), pp.166-172. ⟨10.1016/j.jsams.2017.10.004⟩
Article dans une revue hal-01630969 v1

Power comparison of Cochran-Armitage trend test against allelic and genotypic tests in large-scale case-control genetic association studies

Mathieu Emily
Statistical Methods in Medical Research, 2018, 27 (9), pp.2657-2673. ⟨10.1177/0962280216683979⟩
Article dans une revue hal-01439277 v1

Power evaluation of asymptotic tests for comparing two binomial proportions to detect direct and indirect association in large-scale studies

Mathieu Emily , Chloé Friguet
Statistical Methods in Medical Research, 2017, 26 (6), pp.2780-2799. ⟨10.1177/0962280215608528⟩
Article dans une revue hal-01256507 v1
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SMILE: A novel dissimilarity-based procedure for detecting sparse-specific profiles in sparse contingency tables

Mathieu Emily , Christophe Hitte , Alain Mom
Computational Statistics and Data Analysis, 2016, 99, pp.171-188. ⟨10.1016/j.csda.2016.01.017⟩
Article dans une revue hal-01269901 v1

Impact of human milk pasteurization on the kinetics of peptide release during in vitro dynamic term newborn digestion

Amélie Deglaire , Samira C. de Oliveira , Julien Jardin , Valérie Briard-Bion , Mathieu Emily et al.
Electrophoresis, 2016, 37 (13), pp.1839-1850. ⟨10.1002/elps.201500573⟩
Article dans une revue istex hal-01358601 v1

AGGrEGATOr: A Gene-based GEne-Gene interActTiOn test for case-control association studies

Mathieu Emily
Statistical Applications in Genetics and Molecular Biology, 2016, 15 (2), pp.151-171. ⟨10.1515/sagmb-2015-0074⟩
Article dans une revue hal-01305418 v1

Impact of the Tagging on the Statistical Power of Association Tests in Genome-Wide Association Studies

Mathieu Emily
Human Heredity, 2015, 79 (1), page 34
Article dans une revue hal-01145064 v1

Spatial cluster detection using nearest neighbor distance

Avner Bar-Hen , Mathieu Emily , Nicolas Picard
Spatial Statistics, 2015, 14 (Part C), pp.400-411. ⟨10.1016/j.spasta.2015.07.006⟩
Article dans une revue hal-01259922 v1
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MetAmyl: A METa-Predictor for AMYLoid Proteins

Mathieu Emily , Anthony Talvas , Christian Delamarche
PLoS ONE, 2013, 8 (11), pp.e79722. ⟨10.1371/journal.pone.0079722⟩
Article dans une revue hal-00925855 v1

IndOR: a new statistical procedure to test for SNP-SNP epistasis in genome-wide association studies

Mathieu Emily
Statistics in Medicine, 2012, 31 (21), pp.2359-2373
Article dans une revue hal-00834277 v1

Risk Assessment for Hospital-Acquired Diseases: A Risk-Theory Approach.

Mathieu Emily , Pierre Casez , Olivier François
Risk Analysis, 2009, 29 (4), pp.565-575. ⟨10.1111/j.1539-6924.2008.01176.x⟩
Article dans une revue hal-00370255 v1

Using Biological Networks to Search for Interacting Loci in genome-wide association studies

Mathieu Emily , Thomas Mailund , Jotun Hein , Schauser Leif , Mikkel Heide Schierup
European Journal of Human Genetics, 2009, 17, pp.1231-1240. ⟨10.1038/ejhg.2009.15⟩
Article dans une revue hal-00459473 v1

A statistical approach to estimating the strength of cell-cell interactions under the differential adhesion hypothesis.

Mathieu Emily , Olivier François
Theoretical Biology and Medical Modelling, 2007, 4, pp.37. ⟨10.1186/1742-4682-4-37⟩
Article dans une revue hal-00370257 v1

Conditional coalescent trees with two mutation rates and their application to genomic instability.

Mathieu Emily , Olivier François
Genetics, 2006, 172 (3), pp.1809-20. ⟨10.1534/genetics.105.044099⟩
Article dans une revue hal-00370264 v1

Spatial correlation of gene expression measures in tissue microarray core analysis

Mathieu Emily , Olivier Francois , Didier Morel , Raphael Marcelpoil
Computational and Mathematical Methods in Medicine, 2005, 6 (1), pp.33-39. ⟨10.1080/10273660500035795⟩
Article dans une revue hal-00459476 v1

The multi-objective data-driven approach: a route to drive performance optimization in the food industry

Manon Perrignon , Thomas Croguennec , Romain Jeantet , Mathieu Emily
AgroStat 2024, Sep 2024, Bragança, Portugal
Communication dans un congrès hal-04692566 v1
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Machine Learning to better understand and optimize cheese production

Manon Perrignon , Mathieu Emily , Romain Jeantet , Thomas Croguennec
IDF Cheese Science & Technology Symposium, FIL idf, Jun 2024, Bergen, Norway
Communication dans un congrès hal-04607922 v1

Effet du ratio temps d’effort : temps de récupération sur la capacité de marche de patients atteints d’une artériopathie oblitérante des membres inférieurs symptomatique

Pierre-Yves de Müllenheim , Ségolène Chaudru , Laurent Rouvière , Mathieu Emily , Adrien Kaladji et al.
XXe journées d’études francophones en activités physiques adaptées, May 2020, Caen, France
Communication dans un congrès hal-04805321 v1
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How different tangible and virtual objects can be while still feeling the same?

Xavier de Tinguy , Claudio Pacchierotti , Mathieu Emily , Mathilde Chevalier , Aurélie Guignardat et al.
WHC 2019 - IEEE World Haptics Conference, Jul 2019, Tokyo, Japan. pp.580-585, ⟨10.1109/WHC.2019.8816164⟩
Communication dans un congrès hal-02121839 v1
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Décorrélation adaptative pour la prédiction en grande dimension

Florian Hébert , Mathieu Emily , David Causeur
51es Journées de Statistique 2019, Société Française de Statistique, Jun 2019, Nancy, France
Communication dans un congrès hal-02361735 v1

Impact of pasteurization of human milk on the kinetics of peptide release during gastric digestion in the preterm infant

Amélie Deglaire , Florian Kroell , Samira Cássia de Oliveira , Julien Jardin , Valérie Briard-Bion et al.
5.International Conference on Foodomics, Jan 2018, Cesena, Italy
Communication dans un congrès hal-01709341 v1

Analyzing gene-based gene-gene interactions with R

Mathieu Emily , Nicolas Sounac , Florian Kroell
European Mathematical Genetics Meeting 2016, May 2016, Newcastle upon Tyne, United Kingdom
Communication dans un congrès hal-01439615 v1

The relationship between walking capacity and previous stop duration in patients with peripheral artery disease

Pierre-Yves de Müllenheim , Ségolène Chaudru , Mathieu Emily , Maëva Franconnet , R. Moreau et al.
Proceedings of 21th annua congress of the European Colege of Sport Sciences "Crossing borders through sport science", Centre for Sport Science; University Sports; University of Vienna, Jul 2016, Vienna, Austria
Communication dans un congrès hal-01439402 v1

Statistical methods for gene-based gene-gene interaction detection in R

Mathieu Emily , Nicolas Sounac , Florian Kroell , Magalie Houée-Bigot
JOBIM : journées ouvertes de biologie, informatiques et mathématiques , Ecole Normale Supérieure, Jun 2016, Lyon, France. pp.403-405
Communication dans un congrès hal-01439563 v1

Comparison of GPS, accelerometry and heart rate for estimating metabolic rate during level and uphill outdoor walking

Alexis Le Faucheur , Pierre-Yves de Müllenheim , Mathieu Emily , Ségolène Chaudru , Jacques Prioux et al.
Proceedings of 21th annua congress of the European Colege of Sport Sciences "Crossing borders through sport science", Centre for Sport Science; University Sports; University of Vienna, Jul 2016, Vienna, Austria
Communication dans un congrès hal-01439345 v1

The relationship between walking capacity and previous stop duration in patients with peripheral artery disease

Pierre-Yves de Müllenheim , Ségolène Chaudru , Mathieu Emily , Maëva Franconnet , Romain Moreau et al.
21st Annual Congress of the European College of Sport Science (ECSS), Jul 2016, Vienne, Austria
Communication dans un congrès hal-04804904 v1
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Studying One and Two-Finger Perception of Tactile Directional Cues

Yoren Gaffary , Maud Marchal , Adrien Girard , Marine Pellan , Anouk Asselin et al.
10th International Conference on Haptics - Perception, Devices, Control, and Applications (EuroHaptics), Imperial College London, Jul 2016, Londres, United Kingdom. pp.396-405, ⟨10.1007/978-3-319-42324-1_39⟩
Communication dans un congrès hal-01406434 v1

Effect of recovery duration on walking capacity after a symptom-limited walk in patients with peripheral artery disease

Pierre-Yves de Müllenheim , Ségolène Chaudru , Mathieu Emily , Maëva Franconnet , Romain Moreau et al.
XXVII World Congress of the International Union of Angiology (IUA) / 15th Annual Congress of the French Society for Vascular Medicine (SFVM), Oct 2016, Nancy, France
Communication dans un congrès hal-04804891 v1

Comparison of GPS, accelerometry, and heart rate for estimating metabolic rate during level and uphill outdoor walking

Alexis Le Faucheur , Pierre-Yves de Müllenheim , Ségolène Chaudru , Mathieu Emily , Sandrine Bickert et al.
21st Annual Congress of the European College of Sport Science (ECSS), Jul 2016, Vienna, Austria
Communication dans un congrès hal-04804911 v1

Détection de profils conditionnels dans des matrices creuses pour la sélection génomique

Mathieu Emily , Alain Mom
47èmes journées de Statistique de la SFdS, Société Française de Statistique, Jun 2015, Lille, France
Communication dans un congrès hal-01441256 v1
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Étude de puissance pour la détection d'association directe et indirecte à partir de tables de contingence 2 × 2

Mathieu Emily , Chloé Friguet
46 èmes Journées de Statistique, Société Française de Statistique, Jun 2014, Rennes, France
Communication dans un congrès hal-01090393 v1

A case-only measure of SNP-SNP interaction in GWAS

Mathieu Emily
European Mathematical Genetics Meeting 2013, University Medical Centrer, Apr 2013, Leiden, Netherlands
Communication dans un congrès hal-01439628 v1

Generalized linear factor modeling for dependence between SNPs in GWAS

Mathieu Emily , David Causeur
Statistical fort Genomic Data (SMPGD'13), Jan 2013, Amsterdam, Netherlands
Communication dans un congrès hal-01451794 v1

Biological marker selection for detecting gene-gene interaction in genome-wide association studies

Mathieu Emily , Chloé Friguet
ERCIM2013, Dec 2013, London, France. pp.E1053
Communication dans un congrès hal-00913039 v1
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Sélection de marqueurs pour la détection d'interactions de gènes

Chloé Friguet , Mathieu Emily
45èmes Journées de Statistique, May 2013, Toulouse, France. pp.178
Communication dans un congrès hal-00913031 v1

Haplotype-based method for detecting regions under selection in domestic dog

H. Jean-Baptiste-Adolphe , Mathieu Emily , Amaury Vaysse , C. André , Christophe Hitte
Jobim 2012, 13e Journées Ouvertes en Biologie, Informatique et Mathématiques, 3-6 Juillet 2012, Rennes , Jul 2012, Rennes, France. pp.227-232
Communication dans un congrès hal-01439663 v1

Spatial clustering using nearest-neighbour distance

Mathieu Emily , Avner Bar-Hen
44èmes Journées de Statistique 2012 de la SFdS, Société Française de Statistique, May 2012, Bruxelles, Belgium
Communication dans un congrès hal-01441266 v1

Novel Interactive Techniques for Bimanual Manipulation of 3D Objects with Two 3DoF Haptic Interfaces

Anthony Talvas , Maud Marchal , Clément Nicolas , Gabriel Cirio , Mathieu Emily et al.
Eurohaptics, Jun 2012, Tampere, Finland
Communication dans un congrès hal-00766604 v1

Prediction of amyloidogenic motifs in Human proteins

Mathieu Emily , Claire Schirmer , A. Jan , Anthony Talvas , Cyrille Garnier et al.
Jobim 2012, 13e Journées Ouvertes en Biologie, Informatique et Mathématiques, 3-6 Juillet 2012, Rennes, Jul 2012, Rennes, France. pp.461-462
Communication dans un congrès hal-01439797 v1

SNP-SNP interaction in Association studies

Mathieu Emily
2nd International BIO-SI workshop on Statistical Modelling, ENSAI, Oct 2011, Bruz, France
Communication dans un congrès hal-01451858 v1

Meta-prediction of amyloidogenic fragments using logistic regression

Anthony Talvas , Christian Delamarche , Mathieu Emily
Jobim 2011,12ème Journées ouvertesen Viologie, Informatique et Mathématiques, Institut Pasteur, Jun 2011, Paris, France
Communication dans un congrès hal-01442109 v1

Meta-prediction of amyloidogenic fragments using logistic regression

Anthony Talvas , Christian Delamarche , Mathieu Emily
The 6th IAPR International Conference on Pattern Recognition in Bioinformatics, Nov 2011, Deft, Netherlands
Communication dans un congrès hal-01442092 v1

Détection d'interaction de gènes à l'échelle du génome

Mathieu Emily
42èmes Journées de Statistique 2010 de la SFdS, Société Française de Statistique, May 2010, Marseille, France
Communication dans un congrès hal-01441436 v1
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Shake-Your-Head: Revisiting Walking-In-Place for Desktop Virtual Reality

Léo Terziman , Maud Marchal , Mathieu Emily , Franck Multon , Bruno Arnaldi et al.
ACM Symposium on Virtual Reality Software and Technology, 2010, Hong Kong, Hong Kong SAR China. pp.27--34
Communication dans un congrès hal-00641360 v1

Walking Up and Down in Immersive Virtual Worlds: Novel Interactive Techniques Based on Visual Feedback

Maud Marchal , Anatole Lécuyer , Gabriel Cirio , Laurent Bonnet , Mathieu Emily
IEEE Symposium on 3D User Interface, Mar 2010, Waltham, United States. pp.19-26
Communication dans un congrès inria-00540319 v1

A large scale comparison of predicted amyloigogenic regions using several published methods

Anthony Le Béchec , Anthony Talvas , E. Rio , Mathieu Emily , C. Garnier et al.
Conférences Jacques Monod , Jun 2010, Roscoff, France
Communication dans un congrès hal-01451878 v1
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Estimation Monte Carlo dans les processus ponctuels marqués en biologie tissulaire

Mathieu Emily , Radu S. Stoica
41èmes Journées de Statistique, SFdS, Bordeaux, 2009, Bordeaux, France, France
Communication dans un congrès inria-00386607 v1
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Théorie du risque en santé publique: Application aux infections en milieu hospitalier

Mathieu Emily
41èmes Journées de Statistique, SFdS, Bordeaux, 2009, Bordeaux, France, France
Communication dans un congrès inria-00386689 v1

Protein interaction networks and genome-wide association studies

Mathieu Emily
Journées MAS de la SMAI - Modélisation et Statistiques des Réseaux, Aug 2008, Rennes, France
Communication dans un congrès hal-00461176 v1

Using Biological Networks to Search for Interacting SNPs

Mathieu Emily , Leif Schauser , Thomas Mailund , Mikkel H. Schierup
Genome-wide Association Studies, XX The International Congress of Genetics, Jul 2008, Berlin, Germany
Communication dans un congrès hal-00461158 v1

Biological networks and epistasis in genome-wide association studies

Mathieu Emily , Leif Schauser , Thomas Mailund , Mikkel H. Schierup
The Genomics of Common Diseases, Jul 2007, Hinxton, United Kingdom
Communication dans un congrès hal-00461166 v1

Estimateur de pseudo-vraisemblance pour un processus ponctuel de Markov : application à l'histologie

Mathieu Emily , Olivier François
38ème Journée de Statistique, May 2006, Clamart, France
Communication dans un congrès hal-00461174 v1
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Nitrogen cycle regulation and associated ecosystem services in agroforestry systems. A methodology linking field, lab and modeling experimentations in the context of climate change in Brittany (France)

Romane Mettauer , Olivier Godinot , Mathieu Emily , Edith Le Cadre-Barthélemy
International Congress of the European Society for Agronomy (ESA) 2022 "Diversification & Digitalization – Trends that shape future agriculture", Aug 2022, Postdam, Germany
Poster de conférence hal-04548971 v1

Impact of pasteurisation of human milk on the kinetics of peptide release during gastric digestion in the preterm infant

Amélie Deglaire , Florian Kroell , Samira Cássia de Oliveira , Julien Jardin , Valérie Briard-Bion et al.
4. Food Structures, Digestion & Health International Conference, Nov 2017, Sydney, Australia. 2017
Poster de conférence hal-01651306 v1

Impact of pasteurization of human milk on the kinetics of peptide release during gastric digestion in the preterm infant

Amélie Deglaire , Florian Kroell , Samira Cássia de Oliveira , Julien Jardin , Valérie Briard-Bion et al.
5. International Conference on Food Digestion, Apr 2017, Rennes, France. , 2017
Poster de conférence hal-01552151 v1

Impact de la pasteurisation du lait maternel sur les cinétiques de libération des peptides au cours de la digestion gastrique chez le nouveau-né prématuré

Amélie Deglaire , Florian Kroell , Samira de Oliveira , Julien Jardin , Valérie Briard-Bion et al.
Journées Francophones de Nutrition, Nov 2016, Montpellier, France. Elsevier, Nutrition Clinique et Métabolisme, 31 (3), pp.239-240, 2017
Poster de conférence hal-01404558 v1

Estimating the raised mutation rate in a sample of gene with mutators

Mathieu Emily , Olivier François
JOBIM : journées ouvertes de biologie, informatiques et mathématiques, Jul 2005, Lyon, France
Poster de conférence hal-01441781 v1

Pseudo-haptic Walking

Maud Marchal , Anatole Lécuyer , Gabriel Cirio , Laurent Bonnet , Mathieu Emily
Y. Visell and F. Fontana. Walking with the Senses, Logos Verlag, 2012
Chapitre d'ouvrage hal-00766581 v1
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Modèles statistiques du développement de tumeurs cancéreuses

Mathieu Emily
Mathématiques [math]. Institut National Polytechnique de Grenoble - INPG, 2006. Français. ⟨NNT : ⟩
Thèse tel-00106972 v1