Présentation

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Publications

Metabolomic analysis of a core collection of Brassica rapa and Brassica oleracea unveils unexpected chemical diversity with potential applications in chemical ecology and breeding

Pauline Le Boulch , Anani Amegan Missinou , Stéphanie Boutet , François Perreau , Maria Manzanares-Dauleux et al.

BMC Plant Biology, 2026, 26 (1), pp.569. ⟨10.1186/s12870-026-08269-4⟩

Article dans une revue hal-05659455v1
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Plant Genetic Bases Associated With Microbiota Descriptors Shed Light Into a Novel Holobiont Generalist Genes Theory

Loeiz Maillet , Manon Norest , Adam Kautsky , Anna Geraci , Elisabetta Oddo et al.

Environmental Microbiology, 2025, 27 (5), pp.e70108. ⟨10.1111/1462-2920.70108⟩

Article dans une revue hal-05090352v1
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Chromosome level assembly of five Brassica rapa and oleracea accessions expand the resistance genes reservoir

Cyril Falentin , William J.W. Thomas , Matéo Boudet , Pauline Le Boulch , Alexis Bourdais et al.

Scientific Data , 2025, 12 (1), pp.2016. ⟨10.1038/s41597-025-06261-5⟩

Article dans une revue hal-05421264v1
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Genomic Divergence Shaped the Genetic Regulation of Meiotic Homologous Recombination in Brassica Allopolyploids

Alexandre Pelé , Matthieu Falque , Maryse Lodé-Taburel , Virginie Huteau , Jérôme Morice et al.

Molecular Biology and Evolution, 2025, 42 (4), pp.msaf073. ⟨10.1093/molbev/msaf073⟩

Article dans une revue hal-05033079v1
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Alternating between even and odd ploidy levels switches on and off the recombination control, even near the centromeres

Franz Boideau , Virginie Huteau , Loeiz Maillet , Anael Brunet , Olivier Coriton et al.

The Plant cell, 2024, 36 (10), pp.4472-4490. ⟨10.1093/plcell/koae208⟩

Article dans une revue hal-04682098v1

Genetic control of root morphology in response to nitrogen across rapeseed diversity

Loïc Haelterman , Julien Louvieaux , Claudia Chiodi , Anne-Sophie Bouchet , László Kupcsik et al.

Physiologia Plantarum, 2024, 176 (3), pp.e14315. ⟨10.1111/ppl.14315⟩

Article dans une revue hal-04576276v1
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Combined cytogenetic and molecular methods for taxonomic verification and description of Brassica populations deriving from different origins

Cyril Falentin , Houria Hadj-Arab , Fella Aissiou , Claudia Bartoli , Giuseppe Bazan et al.

Genetic Resources, 2024, 5 (9), pp.61-71. ⟨10.46265/genresj.ryaj6068⟩

Article dans une revue hal-04608007v1

Meta-analysis of seed weight QTLome using a consensus and highly dense genetic map in Brassica napus L

Sayedehsaba Bilgrami , Hadi Darzi Ramandi , Sara Farokhzadeh , Mathieu Rousseau-Gueutin , Ahmad Sobhani Najafabadi et al.

TAG Theoretical and Applied Genetics, 2023, 136 (7), pp.161. ⟨10.1007/s00122-023-04401-2⟩

Article dans une revue hal-04168031v1

The INRAE Biological Resource Center ‘BrACySol’: a French centre of valuable genetic resources to address major issues faced by potato and oilseed rape crops

Florence Esnault , Vincent Richer , Marie Bousseau , Marie-Pierre Cann , Jean-Eric Chauvin et al.

Acta Horticulturae, 2023, XXXI International Horticultural Congress (IHC2022): International Symposium on Conservation and Sustainable Use of Horticultural Genetic Resources (1384), pp.71-76. ⟨10.17660/ActaHortic.2023.1384.9⟩

Article dans une revue hal-04779961v1
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Why old duplicated genes are not thrown away in (paleo)polyploids? Example from the petC gene in Brassica napus

Maud Facon , Gwenaëlle Deniot , Maryse Lodé-Taburel , Heloise Archambeau , Emilie Montes et al.

Plant Molecular Biology, 2023, Plant Molecular Biology, 113, pp.323-327. ⟨10.1007/s11103-023-01387-9⟩

Article dans une revue hal-04338534v1

I-SceI and customized meganucleases-mediated genome editing in tomato and oilseed rape

Benoit Danilo , Émilie Montes , Héloïse Archambeau , Maryse Lodé-Taburel , Mathieu Rousseau-Gueutin et al.

Transgenic Research, 2022, 31 (1), pp.87-105. ⟨10.1007/s11248-021-00287-2⟩

Article dans une revue hal-03545783v1
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Projet BrasExplor : élargir les ressources génétiques du CRB BrACySol pour Brassica oleracea et Brassica rapa

Cyril Falentin , Vincent Richer , Pascal Glory , Gwenaëlle Deniot , Julie Ferreira de Carvalho et al.

NOV'AE - Numéros spéciaux, 2022, Numéro Spécial #2 RARe, pp.21-27. ⟨10.17180/novae-2022-NS02-art03⟩

Article dans une revue hal-03790700v1

Epigenomic and structural events preclude recombination in Brassica napus

Franz Boideau , Gautier Richard , Olivier Coriton , Virginie Huteau , Caroline Belser et al.

New Phytologist, 2022, 234 (2), pp.545-559. ⟨10.1111/nph.18004⟩

Article dans une revue hal-03651949v1
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Untangling structural factors driving genome stabilization in nascent Brassica napus allopolyploids

Julie Ferreira de Carvalho , Solenn Stoeckel , Frédérique Eber , Maryse Lodé-Taburel , Marie-Madeleine Gilet et al.

New Phytologist, 2021, 230 (5), pp.2072-2084. ⟨10.1111/nph.17308⟩

Article dans une revue hal-03227311v1
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Gene and Transposable Element Expression Evolution Following Recent and Past Polyploidy Events in Spartina (Poaceae)

Delphine Giraud , Oscar Lima , Mathieu Rousseau-Gueutin , Armel Salmon , Malika Ainouche

Frontiers in Genetics, 2021, 12, pp.589160. ⟨10.3389/fgene.2021.589160⟩

Article dans une revue hal-03216905v1
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Sequencing and Chromosome-Scale Assembly of Plant Genomes, Brassica rapa as a Use Case

Benjamin Istace , Caroline Belser , Cyril Falentin , Karine Labadie , Franz Boideau et al.

Biology, 2021, 10 (8), ⟨10.3390/biology10080732⟩

Article dans une revue hal-03318024v1
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A Modified Meiotic Recombination in Brassica napus Largely Improves Its Breeding Efficiency

Franz Boideau , Alexandre Pelé , Coleen Tanguy , Gwenn Trotoux , Frédérique Eber et al.

Biology, 2021, 10 (8), pp.771. ⟨10.3390/biology10080771⟩

Article dans une revue hal-03328112v1
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Genome Size Variation and Comparative Genomics Reveal Intraspecific Diversity in Brassica rapa

Julien Boutte , Loeiz Maillet , Thomas Chaussepied , Sébastien Letort , Jean-Marc Aury et al.

Frontiers in Plant Science, 2020, 11, pp.577536. ⟨10.3389/fpls.2020.577536⟩

Article dans une revue hal-03137565v1
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Une machine à recombiner chez les Brassica

Anne-Marie Chèvre , Franz Boideau , Alexandre Pelé , Mathieu Rousseau-Gueutin

Sélectionneur Français, 2020, 71 (71), pp.49-57

Article dans une revue hal-03226364v1
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Long-read assembly of the Brassica napus reference genome Darmor-bzh

Mathieu Rousseau-Gueutin , Caroline Belser , Corinne Da silva , Gautier Richard , Benjamin Istace et al.

GigaScience, 2020, 9 (12), pp.giaa137. ⟨10.1093/gigascience/giaa137⟩

Article dans une revue (data paper) hal-03283975v1

Impact of whole genome triplication on the evolutionary history and the functional dynamics of regulatory genes involved in Brassica self-incompatibility signalling pathway

Thanina Azibi , Houria Hadj-Arab , Maryse Lodé-Taburel , Julie Ferreira de Carvalho , Gwenn Trotoux et al.

Sexual Plant Reproduction, 2020, 33 (1), pp.43-58. ⟨10.1007/s00497-020-00385-x⟩

Article dans une revue hal-02784702v1
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Cytonuclear interactions remain stable during allopolyploid evolution despite repeated whole-genome duplications in Brassica

Julie Ferreira de Carvalho , Jérémy Lucas , Gwenaëlle Deniot , Cyril Falentin , Olivier Filangi et al.

The Plant Journal, 2019, 98 (3), pp.434-447. ⟨10.1111/tpj.14228⟩

Article dans une revue hal-02019346v1

Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps

Caroline Belser , Benjamin Istace , Erwan Denis , Marion Dubarry , Franc-Christophe Baurens et al.

Nature Plants, 2018, 4 (11), pp.879-887. ⟨10.1038/s41477-018-0289-4⟩

Article dans une revue hal-01977046v1

A novel Brassica rapa L. genetic diversity found in Algeria

F. Aissiou , Anne Laperche , Cyril Falentin , Maryse Lodé-Taburel , Gwenaëlle Deniot et al.

Euphytica, 2018, 214 (12), pp.241. ⟨10.1007/s10681-018-2318-9⟩

Article dans une revue hal-02077529v1
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Speciation success of polyploid plants closely Relates to the regulation of meiotic recombination.

Alexandre Pelé , Mathieu Rousseau-Gueutin , Anne-Marie Chèvre

Frontiers in Plant Science, 2018, 9, ⟨10.3389/fpls.2018.00907⟩

Article dans une revue (article de synthèse) hal-02626378v1
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Evolution of DMSP (dimethylsulfoniopropionate) biosynthesis pathway: Origin and phylogenetic distribution in polyploid Spartina (Poaceae, Chloridoideae)

Hélène Rousseau , Mathieu Rousseau-Gueutin , Xavier Dauvergne , Julien Boutte , Gaëlle Simon et al.

Molecular Phylogenetics and Evolution, 2017, 114, pp.401-414. ⟨10.1016/j.ympev.2017.07.003⟩

Article dans une revue hal-01579439v1

Gene Introgression in Weeds Depends on Initial Gene Location in the Crop: Brassica napus - Raphanus raphanistrum Model

Katarzyna Adamczyk , Sabrina Delaunay , Anne Vannier , Caroline François , Gwénaëlle Thomas et al.

Genetics, 2017, 206 (3), pp.1361-1372. ⟨10.1534/genetics.117.201715⟩

Article dans une revue hal-01607924v1
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Mapping of homoeologous chromosome exchanges influencing quantitative trait variation in Brassica napus.

Anna Stein , Olivier Coriton , Mathieu Rousseau-Gueutin , Birgit Samans , Sarah V Schiessl et al.

Plant Biotechnology Journal, 2017, 15 (11), pp.1478-1489. ⟨10.1111/pbi.12732⟩

Article dans une revue hal-01608092v1
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The impact of open pollination on the structural evolutionary dynamics, meiotic behavior, and fertility of resynthesized allotetraploid Brassica napus L.

Mathieu Rousseau-Gueutin , Jérôme Morice , Olivier Coriton , Virginie Huteau , Gwenn Trotoux et al.

G3, 2017, 7 (2), pp.705-717. ⟨10.1534/g3.116.036517⟩

Article dans une revue hal-01607894v1

The poor lonesome A subgenome of Brassica napus var. Darmor (AACC) may not survive without its mate.

Alexandre Pelé , Gwenn Trotoux , Frederique Eber , Maryse Lodé-Taburel , Marie-Madeleine Gilet et al.

New Phytologist, 2017, 213 (4), pp.1886-1897. ⟨10.1111/nph.14147⟩

Article dans une revue hal-01532711v1
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The evolutionary fate of the chloroplast and nuclear rps16 genes as revealed through the sequencing and comparative analyses of four novel legume chloroplast genomes from Lupinus

Jean Keller , Mathieu Rousseau-Gueutin , Guillaume E. Martin , Jérôme Morice , Julien Boutte et al.

DNA Research, 2017, 24 (4), pp.343-358. ⟨10.1093/dnares/dsx006⟩

Article dans une revue hal-01612869v1
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Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas.

Alexandre Pelé , Matthieu Falque , Gwenn Trotoux , Frederique Eber , Sylvie Negre et al.

PLoS Genetics, 2017, 13 (5), pp.e1006794. ⟨10.1371/journal.pgen.1006794⟩

Article dans une revue hal-01607280v1
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Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima

Julien Boutte , Benoît Aliaga , Oscar Lima , Julie Ferreira de Carvalho , Abdelkader Aïnouche et al.

G3, 2016, 6 (1), pp.29--40. ⟨10.1534/g3.115.023242⟩

Article dans une revue hal-01269912v1
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Reference Transcriptomes and Detection of Duplicated Copies in Hexaploid and Allododecaploid Spartina Species (Poaceae)

Julie Boutte , Julie Ferreira de Carvalho , Mathieu Rousseau-Gueutin , Julie Poulain , Corinne da Silva et al.

Genome Biology and Evolution, 2016, 8 (9), pp.3030-3044. ⟨10.1093/gbe/evw209⟩

Article dans une revue hal-01412081v1

Re-synthèse d’espèces : l’exemple du colza

Anne-Marie Chèvre , Alexandre Pelé , Sophie Paillard , Mathieu Rousseau-Gueutin

Sélectionneur Français, 2016, 67 (67), pp.21-27

Article dans une revue hal-01607867v1
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Genetic basis of nitrogen use efficiency and yield stability across environments in winter rapeseed

Anne-Sophie Bouchet , Anne Laperche , Christine Bissuel , Cécile Baron , Jérôme Morice et al.

BMC Genetics, 2016, 17 (1), pp.131. ⟨10.1186/s12863-016-0432-z⟩

Article dans une revue hal-01462774v1
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Centromere Locations in Brassica A and C Genomes Revealed Through Half-Tetrad Analysis.

Annaliese S Mason , Mathieu Rousseau-Gueutin , Jérôme Morice , Philipp E Bayer , Naghmeh Besharat et al.

Genetics, 2016, 202 (2), pp.513-23. ⟨10.1534/genetics.115.183210⟩

Article dans une revue hal-01345819v1
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Spartina versicolor Fabre: Another case of Spartina trans-Atlantic introduction?

Alex Baumel , Mathieu Rousseau-Gueutin , C. Sapienza-Bianchi , Agnès Gareil , N. Duong et al.

Biological Invasions, 2016, 18 (8), pp.2123-2135. ⟨10.1007/s10530-016-1128-z⟩

Article dans une revue hal-01355664v1
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A tale of two Spartinas: Climatic, photobiological and isotopic insights on the fitness of non-indigenous versus native species

Bernado Duarte , Alexandra Baeta , Mathieu Rousseau-Gueutin , Malika L. Ainouche , Joao Carlos Marques et al.

Estuarine, Coastal and Shelf Science, 2015, 167, pp.178-190. ⟨10.1016/j.ecss.2015.06.015⟩

Article dans une revue hal-01170439v1

The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating

Mathieu Rousseau-Gueutin , Sidonie Bellot , Guillaume E. Martin , Julien Boutte , Houda Chelaifa et al.

Molecular Phylogenetics and Evolution, 2015, 93, pp.5-16. ⟨10.1016/j.ympev.2015.06.013⟩

Article dans une revue istex hal-01187129v1
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The first complete chloroplast genome of the Genistoid legume Lupinus luteus: evidence for a novel major lineage-specific rearrangement and new insights regarding plastome evolution in the legume family

Guillaume E. Martin , Mathieu Rousseau-Gueutin , Solenn Cordonnier , Oscar Lima , Sophie Michon-Coudouel et al.

Annals of Botany, 2014, 113 (7), pp.1197-1210. ⟨10.1093/aob/mcu050⟩

Article dans une revue hal-01061902v1

Plastid DNA in the nucleus

Mathieu Rousseau-Gueutin , Michael Ayliffe , Jeremy Timmis

Plant Signaling and Behavior, 2014, 7 (2), pp.269-272. ⟨10.4161/psb.18762⟩

Article dans une revue hal-03318154v1

Potential Functional Replacement of the Plastidic Acetyl-CoA Carboxylase Subunit (accD) Gene by Recent Transfers to the Nucleus in Some Angiosperm Lineages

Mathieu Rousseau-Gueutin , Xun Huang , Emily Higginson , Michael Ayliffe , Anil Day et al.

Plant Physiology, 2013, 161 (4), pp.1918-1929. ⟨10.1104/pp.113.214528⟩

Article dans une revue hal-00834941v1

PFRU, a single dominant locus regulates the balance between sexual and asexual plant reproduction in cultivated strawberry.

Amélia Gaston , Justine Perrotte , Estelle Lerceteau-Köhler , Mathieu Rousseau-Gueutin , Aurélie Petit et al.

Journal of Experimental Botany, 2013, 64 (7), pp.1837-48. ⟨10.1093/jxb/ert047⟩

Article dans une revue hal-02646133v1

Plastid Sequences Contribute to Some Plant Mitochondrial Genes

D. Wang , Mathieu Rousseau-Gueutin , J. Timmis

Molecular Biology and Evolution, 2012, 29 (7), pp.1707-1711. ⟨10.1093/molbev/mss016⟩

Article dans une revue hal-03318153v1

Development, mapping and transferability of Fragaria EST-SSRs within the Rosodae supertribe

Mathieu Rousseau-Gueutin , Laurent Richard , Loick Le Dantec , Henri H. Caron , Beatrice Denoyes-Rothan

Plant Breeding, 2011, 130 (2), pp.248-255. ⟨10.1111/j.1439-0523.2010.01785.x⟩

Article dans une revue istex hal-02646384v1
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A Novel Class of PTEN Protein in Arabidopsis displays Unusual Phosphoinositide Phosphatase Activity and Efficiently Binds Phosphatidic Acid.

Anne Pribat , Rodnay Sormani , Mathieu Rousseau-Gueutin , Magdalena M. Julkowska , Christa Testerink et al.

Biochemical Journal, 2011, 441 (1), pp.161-171. ⟨10.1042/BJ20110776⟩

Article dans une revue hal-00658162v1

Conservation of Plastid Sequences in the Plant Nuclear Genome for Millions of Years Facilitates Endosymbiotic Evolution

Mathieu Rousseau-Gueutin , Michael Ayliffe , Jeremy Timmis

Plant Physiology, 2011, 157 (4), pp.2181-2193. ⟨10.1104/pp.111.185074⟩

Article dans une revue hal-03318155v1

Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): new insights from phylogenetic analyses of low-copy nuclear genes.

Mathieu Rousseau-Gueutin , A. Gaston , Abdelkader Aïnouche , Malika L. Aïnouche , K. Olbricht et al.

Molecular Phylogenetics and Evolution, 2009, 51 (3), pp.515-30. ⟨10.1016/j.ympev.2008.12.024⟩

Article dans une revue istex hal-00406777v1

Comparative genetic mapping between octoploid and diploid Fragaria species reveals a high level of colinearity between their genomes and the essentially disomic behavior of the cultivated octoploid strawberry

Mathieu Rousseau-Gueutin , Estelle Lerceteau-Köhler , Laure Barrot , Daniel James Sargent , Amparo Monfort et al.

Genetics, 2008, 179 (4), pp.2045-2060. ⟨10.1534/genetics.107.083840⟩

Article dans une revue hal-02667890v1

An enhanced microsatellite map of diploid Fragaria

D.J. Sargent , Juliette Clarke , D.W. Simpson , K.R. Tobutt , Pere Arus et al.

TAG Theoretical and Applied Genetics, 2006, 112 (7), pp.1349-1359. ⟨10.1007/s00122-006-0237-y⟩

Article dans une revue istex hal-02660931v1