Michaël Sdika

123
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Publications

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Explainable Monotonic Networks and Constrained Learning for Interpretable Classification and Weakly Supervised Anomaly Detection

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika
Pattern Recognition, 2025, 160, pp.111186. ⟨10.1016/j.patcog.2024.111186⟩
Article dans une revue hal-04776992 v2
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Comparing Different Methods for the Diagnosis of Liver Steatosis: What Are the Best Diagnostic Tools?

Sophie Chopinet , Olivier Lopez , Sophie Brustlein , Antoine Uzel , Anais Moyon et al.
Diagnostics, 2024, 14 (20), pp.2292. ⟨10.3390/diagnostics14202292⟩
Article dans une revue hal-04820344 v1
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A Weakly Supervised Gradient Attribution Constraint for Interpretable Classification and Anomaly Detection

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika
IEEE Transactions on Medical Imaging, 2023, ⟨10.1109/TMI.2023.3282789⟩
Article dans une revue hal-04110698 v2
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Evaluation of deep learning models for quality control of MR spectra

Sana Vaziri , Huawei Liu , Emily Xie , Helene Ratiney , Michaël Sdika et al.
Frontiers in Neuroscience, 2023, 17, ⟨10.3389/fnins.2023.1219343⟩
Article dans une revue hal-04214565 v1

A priori free spectral unmixing with periodic absorbance changes: application for auto-calibrated intraoperative functional brain mapping

Charly Caredda , Jérémy Cohen , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika et al.
Biomedical optics express, 2023, 15 (1), pp.387. ⟨10.1364/BOE.491292⟩
Article dans une revue hal-04369614 v1

Intraoperative identification of functional brain areas with RGB imaging using statistical parametric mapping: Simulation and clinical studies

Charly Caredda , E. van Reeth , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika et al.
NeuroImage, 2023, pp.120286. ⟨10.1016/j.neuroimage.2023.120286⟩
Article dans une revue hal-04170059 v1
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An explicit Estimated Baseline Model for Robust Estimation of Fluorophores using Multiple-Wavelength Excitation Fluorescence Spectroscopy

Arthur Gautheron , M. Sdika , M. Hébert , B. Montcel
IEEE Transactions on Biomedical Engineering, 2023, 71 (1), pp.295-306. ⟨10.1109/TBME.2023.3299689⟩
Article dans une revue hal-04188757 v1
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Automatic Segmentation and Location Learning of Neonatal Cerebral Ventricles in 3D Ultrasound Data Combining CNN and CPPN

Matthieu Martin , Bruno Sciolla , Michaël Sdika , Philippe Quetin , Philippe Delachartre
Computers in Biology and Medicine, 2021, pp.104268. ⟨10.1016/j.compbiomed.2021.104268⟩
Article dans une revue hal-03148181 v1
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Intraoperative Resting-State Functional Connectivity Based on RGB Imaging

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Fabien Schneider et al.
Diagnostics, 2021, 11 (11), pp.2067. ⟨10.3390/diagnostics11112067⟩
Article dans une revue hal-03423345 v1
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Real Time Intraoperative Functional Brain Mapping Based on RGB Imaging

C. Caredda , L. Mahieu-Williame , R. Sablong , M. Sdika , J. Guyotat et al.
Innovation and Research in BioMedical engineering, 2020, ⟨10.1016/j.irbm.2020.04.004⟩
Article dans une revue hal-02568247 v1

Optimal Spectral Combination of a Hyperspectral Camera for Intraoperative Hemodynamic and Metabolic Brain Mapping

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.
Applied Sciences, 2020, 10 (15), pp.5158. ⟨10.3390/app10155158⟩
Article dans une revue hal-02908361 v1

MRI-based radiomics to predict lipomatous soft tissue tumors malignancy: a pilot study

Benjamin Leporq , Amine Bouhamama , Frank Pilleul , Fabrice Lame , Catherine Bihane et al.
Cancer Imaging, 2020, 20 (1), pp.Article number: 78. ⟨10.1186/s40644-020-00354-7⟩
Article dans une revue hal-03107185 v1

Corrigendum to “Automatic myocardial ischemic lesion detection on magnetic resonance perfusion weighted imaging prior perfusion quantification: A pre-modeling strategy” [Comput. Biol. Med. 110 (2019) 108–119]

Clément Daviller , Thomas Grenier , Hélène Ratiney , Michaël Sdika , Pierre Croisille et al.
Computers in Biology and Medicine, 2019, 114, pp.103455. ⟨10.1016/j.compbiomed.2019.103455⟩
Article dans une revue hal-03009072 v1
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Diffeomorphic B-Spline Vector Fields With a Tractable Set of Inequalities

Michaël Sdika
Mathematics of Computation, 2019, 88 (320), pp.2827--2856. ⟨10.1090/mcom/3419⟩
Article dans une revue hal-01956237 v1
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Automatic myocardial ischemic lesion detection on magnetic resonance perfusion weighted imaging prior perfusion quantification: A pre-modeling strategy

Clément Daviller , Thomas Grenier , Hélène Ratiney , Michaël Sdika , Pierre Croisille et al.
Computers in Biology and Medicine, 2019, 110, pp.108-119. ⟨10.1016/j.compbiomed.2019.05.001⟩
Article dans une revue hal-02135018 v1
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Repetitive Motion Compensation for Real Time Intraoperative Video Processing

Michaël Sdika , Laure Alston , David Rousseau , Jacques Guyotat , Laurent Mahieu-Williame et al.
Medical Image Analysis, 2019, 53, pp.1-10. ⟨10.1016/j.media.2018.12.005⟩
Article dans une revue hal-01974104 v2
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Intraoperative quantitative functional brain mapping using an RGB camera

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Laure Alston et al.
Neurophotonics, 2019, 6 (04), pp.1. ⟨10.1117/1.NPh.6.4.045015⟩
Article dans une revue hal-02425832 v1
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Removing Segmentation Inconsistencies with Semi-Supervised Non-Adjacency Constraint

Pierre-Antoine Ganaye , Michaël Sdika , Bill Triggs , Hugues Benoit-Cattin
Medical Image Analysis, 2019, 58, pp.101551. ⟨10.1016/j.media.2019.101551⟩
Article dans une revue hal-02275956 v1
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Automatic spinal cord localization, robust to MRI contrasts using global curve optimization

Charley Gros , Benjamin de Leener , Sara Dupont , Allan Martin , Michael Fehlings et al.
Medical Image Analysis, 2018, 44, pp.215-227. ⟨10.1016/j.media.2017.12.001⟩
Article dans une revue hal-01690881 v1

Reproducibility of in vivo magnetic resonance imaging T 1 rho and T 2 relaxation time measurements of hip cartilage at 3.0T in healthy volunteers

Angeline Nemeth , Lucy Di Marco , Florent Boutitie , Michael Sdika , Denis Grenier et al.
Journal of Magnetic Resonance Imaging, 2017, 47 (4), pp.1022-1033. ⟨10.1002/jmri.25799⟩
Article dans une revue hal-01560104 v1

Multi-atlas-based fully automatic segmentation of individual muscles in rat leg

Michaël Sdika , Anne Tonson , Yann Le Fur , Patrick J Cozzone , David Bendahan
Magnetic Resonance Materials in Physics, Biology and Medicine, 2016, 29 (2), pp.223-235. ⟨10.1007/s10334-015-0511-6⟩
Article dans une revue hal-01375862 v1

A reliable spatially normalized template of the human spinal cord - Applications to automated white matter/gray matter segmentation and tensor-based morphometry (TBM) mapping of gray matter alterations occurring with age

Manuel Taso , Arnaud Le Troter , Michaël Sdika , Julien Cohen-Adad , Pierre-Jean Arnoux et al.
NeuroImage, 2015, 117, p.20-28. ⟨10.1016/j.neuroimage.2015.05.034⟩
Article dans une revue hal-01414352 v1
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misoSR: Medical Image Isotropic Super-Resolution Reconstruction

Eric van Reeth van Reeth , Geetha Soujanya , Michaël Sdika , Frederic Cervenansky , Chueh Loo Poh
Midas Journal, 2015
Article dans une revue hal-01799683 v1
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Enhancing atlas based segmentation with multiclass linear classifiers

Michaël Sdika
Medical Physics, 2015, 42, pp.7169. ⟨10.1118/1.4935946⟩
Article dans une revue hal-01375850 v1

Framework for integrated MRI average of the spinal cord white and gray matter: The MNI–Poly–AMU template

V.S. Fonov , A. Le Troter , M. Taso , B. de Leener , Gaëtan Lévêque et al.
NeuroImage, 2014, 102 (Pt2), pp.817-827. ⟨10.1016/j.neuroimage.2014.08.057⟩
Article dans une revue hal-01117512 v1

Fast multidimensional NMR spectroscopy for sparse spectra

D. Merhej , H. Ratiney , C. Diab , M. Khalil , Michaël Sdika et al.
NMR in Biomedicine, 2014, 27 (6), pp.640-655. ⟨10.1002/nbm.3100⟩
Article dans une revue istex hal-00977517 v1

Construction of an in vivo human spinal cord atlas based on high-resolution MR images at cervical and thoracic levels: preliminary results

M Taso , A Le Troter , M Sdika , Jean-Philippe Ranjeva , M Guye et al.
Magnetic Resonance Materials in Physics, Biology and Medicine, 2013, 27, pp.257-267
Article dans une revue hal-01097040 v1
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A Sharp Sufficient Condition for B-Spline Vector Field Invertibility. Application to Diffeomorphic Registration and Interslice Interpolation.

Michaël Sdika
SIAM Journal on Imaging Sciences, 2013, 6 (4), pp.2236-2257. ⟨10.1137/120879920⟩
Article dans une revue hal-01902498 v1

A genome-wide association study of brain lesion distribution in multiple sclerosis.

P.A. Gourraud , Michaël Sdika , P. Khankhanian , R.G. Henry , A. Beheshtian et al.
Brain - A Journal of Neurology , 2013, 136, pp.1012-24. ⟨10.1093/brain/aws363⟩
Article dans une revue hal-01902499 v1

Bootstrap quantification of cardiac pulsation artifact in DTI

S. Chung , B. Courcot , Michaël Sdika , K. Moffat , C. Rae et al.
NeuroImage, 2010, 49 (1), pp.631-40
Article dans une revue hal-00617749 v1
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Combining atlas based segmentation and intensity classification with nearest neighbor transform and accuracy weighted vote

Michaël Sdika
Medical Image Analysis, 2010, 14 (2), pp.219-26. ⟨10.1016/j.media.2009.12.004⟩
Article dans une revue hal-00617791 v1
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Nonrigid registration of multiple sclerosis brain images using lesion inpainting for morphometry or lesion mapping.

Michaël Sdika , Daniel Pelletier
Human Brain Mapping, 2009, 30, pp.1060-7. ⟨10.1002/hbm.20566⟩
Article dans une revue istex hal-01902507 v1

Whole brain voxel-wise analysis of single-subject serial DTI by permutation testing.

S. Chung , D. Pelletier , Michaël Sdika , Y. Lu , I. Berman et al.
NeuroImage, 2008, 39, pp.1693-705. ⟨10.1016/j.neuroimage.2007.10.039⟩
Article dans une revue hal-01902508 v1
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A Fast Nonrigid Image Registration With Constraints on the Jacobian Using Large Scale Constrained Optimization

Michaël Sdika
IEEE Transactions on Medical Imaging, 2008, 27 (2), pp.271-281. ⟨10.1109/TMI.2007.905820⟩
Article dans une revue hal-02073305 v1

Estimation of metabolite T1 relaxation times using tissue specific analysis, signal averaging and bootstrapping from magnetic resonance spectroscopic imaging data

H. Ratiney , S. M. Noworolski , Michaël Sdika , R. Srinivasan , R. G. Henry et al.
Magn Reson Mater Phy Biol Med, 2007, 20 (3), pp.143-155
Article dans une revue hal-00443421 v1
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Boundary conditions for Young - van Vliet recursive filtering

Bill Triggs , Michaël Sdika
IEEE Transactions on Signal Processing, 2006, 54 (6), pp.2365 - 2367. ⟨10.1109/TSP.2006.871980⟩
Article dans une revue inria-00548616 v1

Time-Domain Semi-Parametric Estimation Based on a Metabolite Basis Set

H. Ratiney , Michaël Sdika , Y. Coenradie , S. Cavassila , D. van Ormondt et al.
Nuclear Magnetic Resonance in Biomedicine, 2005, 18, pp.1-13
Article dans une revue hal-00443422 v1
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Vers une meilleure interprétabilité des réseaux de neurones pour la prédiction du sepsis via des cartes d'attribution variable par variable

Pierre-Elliott Thiboud , Valentine Wargnier-Dauchelle , Mathieu Lefort , Nicolas Duchateau , Michaël Sdika
Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM), Mar 2025, Nice, France
Communication dans un congrès hal-04971677 v1
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Towards Better Interpretability of Sepsis Prediction by Deep Neural Networks with Variable-wise Attribution Maps

P.-E Thiboud , V Wargnier-Dauchelle , M Lefort , N Duchateau , M Sdika
2025 IEEE International Symposium on Biomedical Imaging (ISBI), Apr 2025, Houston (Texas), United States
Communication dans un congrès hal-04776927 v3
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Dynamic Single-Pixel Imaging on an Extended Field of View without Warping the Patterns

Thomas Maitre , Elie Bretin , Romain Phan , Nicolas Ducros , Michaël Sdika
International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2024, Marrakech, Morocco. pp 275-284, ⟨10.1007/978-3-031-72104-5_27⟩
Communication dans un congrès hal-04533981 v2
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Hybrid single-pixel camera for dynamic hyperspectral imaging

Thomas Maitre , Elie Bretin , Laurent Mahieu-Williame , Michaël Sdika , Nicolas Ducros
2024 IEEE International Symposium on Biomedical Imaging (ISBI), May 2024, Athens, France. pp.1-5, ⟨10.1109/ISBI56570.2024.10635884⟩
Communication dans un congrès hal-04310110 v2
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Application on Clinical Data of Robust Estimation of PpIX in Multispectral Excited Fluorescence Spectroscopy

Arthur Gautheron , Michaël Sdika , J. Guyotat , antoine uzel , David Meyronet et al.
RITS 2024, Jun 2024, Clermond - Ferrand, France
Communication dans un congrès hal-04617157 v1

Near infrared diffuse reflectance spectroscopy for fat quantification in fatty liver disease

Antoine Uzel , Michaël Sdika , Sophie Chopinet , Olivier Lopez , Bruno Montcel
Advanced Biomedical and Clinical Diagnostic and Surgical Guidance Systems XXII, Jan 2024, San-Francisco, United States. pp.29, ⟨10.1117/12.3001895⟩
Communication dans un congrès hal-04628102 v1

Near infrared diffuse reflectance spectroscopy quantification in fatty liver disease

Antoine Uzel , Olivier Lopez , Sophie Chopinet , Michaël Sdika , Bruno Montcel
Tissue Optics and Photonics III, Apr 2024, Strasbourg, France. pp.8, ⟨10.1117/12.3017175⟩
Communication dans un congrès hal-04628154 v1
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The Impact of Hardware Variability on Applications Packaged with Docker and Guix: a Case Study in Neuroimaging

Gaël Vila , Emmanuel Medernach , Inés Gonzalez , Axel Bonnet , Yohan Chatelain et al.
ACM REP'24, ACM, Jun 2024, Rennes, France. pp.75-84, ⟨10.1145/3641525.3663626⟩
Communication dans un congrès hal-04480308 v2
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An unexpected confounder: how brain shape can be used to classify MRI scans ?

Valentine Wargnier-Dauchelle , Thomas Grenier , Michaël Sdika
Medical Imaging with Deep Learning, Jul 2024, Paris, France
Communication dans un congrès hal-04561863 v1

Evaluation of liver viability for transplantation by fluorescence spectroscopy

Antoine Uzel , Olivier Lopez , Arthur Gautheron , Guillaume Rossignol , Xavier Muller et al.
Photonics Europe 2024, Apr 2024, Strasbourg, France. pp.PC130090F, ⟨10.1117/12.3017172⟩
Communication dans un congrès hal-04617068 v1

Pixel-wise and real-time estimation of optical mean path length using deep learning: application for intraoperative functional brain mapping

Charly Caredda , Ivan Ezhov , Michaël Sdika , Frédéric Lange , Luca Giannoni et al.
Clinical Biophotonics III, Apr 2024, Strasbourg, France. pp.35, ⟨10.1117/12.3016632⟩
Communication dans un congrès hal-04661800 v1

Robust estimation of 5-ALA-induced PpIX contributions in multiple-wavelength excitation fluorescence spectroscopy to improve intraoperative glioma detection: application on clinical data

Arthur Gautheron , Michaël Sdika , Jacques Guyotat , Antoine Uzel , David Meyronet et al.
Photonics Europe 2024, Apr 2024, Strasbourg, France. pp.1300908, ⟨10.1117/12.3022093⟩
Communication dans un congrès hal-04617079 v1
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Quantification de graisse pour la stéatose hépatique par spectroscopie proche infrarouge en réflectance diffuse

A Uzel , Olivier Lopez , S Chopinet , M Sdika , B Montcel
Recherche en Imagerie et Technologies pour la Santé 2024, Jun 2024, Aubière, France
Communication dans un congrès hal-04628297 v1
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Constrained non-negative networks for a more explainable and interpretable classification

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika
Medical Imaging with Deep Learning, Jul 2024, Paris, France
Communication dans un congrès hal-04561860 v1

HyperProbe consortium: innovate tumour neurosurgery with innovative photonic solutions

Charly Caredda , Luca Giannoni , Frédéric Lange , Ivan Ezhov , Adithep Kawinkij et al.
SFNR 2024, Société Française de Neuroradiologie, Mar 2024, Paris, France
Communication dans un congrès hal-04959009 v1

Separable spectral unmixing based on the learning of periodic absorbance changes: application to functional brain mapping using RGB imaging

C. Caredda , Jérémy Cohen , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika et al.
European Conferences on Biomedical Optics, 2023, Munich, Germany, SPIE, Jun 2023, Munchen, Germany. pp.44, ⟨10.1117/12.2670506⟩
Communication dans un congrès hal-04181635 v1
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Robust Unsupervised Image to Template Registration Without Image Similarity Loss

Slim Hachicha , Célia Le , Valentine Wargnier-Dauchelle , Michaël Sdika
Medical Image Learning with Limited and Noisy Data, Second International Workshop, MILLanD 2023, Held in Conjunction with MICCAI 2023, Vancouver, Proceedings, Oct 2023, Vancouver, Canada
Communication dans un congrès hal-04183379 v1

Near infrared diffuse reflectance spectroscopy for fat quantification in non-alcoholic fatty liver disease

Antoine Uzel , Michaël Sdika , Sophie Chopinet , Olivier Lopez , Bruno Montcel
Diffuse Optical Spectroscopy and Imaging, Jun 2023, Munich, Germany. pp.60, ⟨10.1117/12.2669268⟩
Communication dans un congrès hal-04279251 v1
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Reproducibility of Tumor Segmentation Outcomes with a Deep Learning Model

Morgane Des Ligneris , Axel Bonnet , Yohan Chatelain , Tristan Glatard , Michaël Sdika et al.
International Symposium on Biomedical Imaging (ISBI), Apr 2023, Cartagena de Indias, Colombia. ⟨10.1109/ISBI53787.2023.10230482⟩
Communication dans un congrès hal-04006057 v1

Comparison of intraoperative functional brain maps obtained with RGB imaging with preoperative functional magnetic resonance Imaging maps: a task-based and resting-state study

Charly Caredda , Anne Josset , Eric van Reeth van Reeth , Laurent Mahieu-Williame , Raphaël Sablong et al.
Clinical Biophotonics II, Apr 2022, Strasbourg, France. pp.14, ⟨10.1117/12.2621507⟩
Communication dans un congrès hal-03687220 v1

Intraoperative optical imaging for neurosurgery guidance

Charly Caredda , Laure Alston , Arthur Gautheron , L. Mahieu-Williame , Bruno Montcel et al.
Journées de la Recherche en Imagerie et Technologies pour la Santé (RITS ) 2022, May 2022, Brest, France
Communication dans un congrès hal-03700652 v1

Design of brain simulating liquid and numeric phantoms for evaluating hemodynamic changes in intraoperative functional brain mapping studies

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.
Clinical Biophotonics II, Apr 2022, Strasbourg, France. pp.37, ⟨10.1117/12.2621235⟩
Communication dans un congrès hal-03687207 v1
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Robust Estimation of 5-ALA Induced PpIX Multiple-Wavelength Excitation Fluorescence Spectroscopy for Improving Glioma Classification

Arthur Gautheron , Michaël Sdika , Mathieu Hébert , Bruno Montcel
SPIE Photonics Europe, Clinical Biophotonics II ; SPIE proceedings, Apr 2022, Strasbourg, France. pp.1214607, ⟨10.1117/12.2620945⟩
Communication dans un congrès hal-03665499 v1

Estimation of Fluorescence Contributions using Multiple-Wavelength Excitation: the example of PpIX for improving Glioma Classification

Arthur Gautheron , Michael Sdika , Mathieu Hébert , Bruno Montcel
Journées Imagerie Optique Non Conventionnelle (JIONC), Mar 2022, Paris, France
Communication dans un congrès hal-03597733 v1

Un Classifieur plus Interprétable pour la SEP

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika
Congrès Société Française de Résonance Magnétique en Biologie et Médecine (SFRMBM), Sep 2021, Lyon, France
Communication dans un congrès hal-03212961 v1
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Intraoperative Statistical Parametric Brain Mapping using RGB Imaging

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.
European Conferences on Biomedical Optics, Jun 2021, Munchen, Germany
Communication dans un congrès hal-03261989 v1

Application of Deep Leaning Model for Quality Control of Short-echo 7T MRSI with Various Disease Types

Huawei Liu , Emilie Xie , H. Ratiney , Michaël Sdika , Yan Li
2021 ISMRM & SMRT Annual Meeting, May 2021, virtual Vancouver, Canada
Communication dans un congrès hal-03519714 v1
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Intraoperative Resting State Functional Connectivity Based on RGB Imaging

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Fabien C Schneider et al.
European Conferences on Biomedical Optics, Jun 2021, Munchen (virtual), Germany
Communication dans un congrès hal-03262003 v1
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Optimal Spectral Combination of a Hyperspectral Camera for Intraoperative Hemodynamic and Metabolic Brain Mapping

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.
European Conferences on Biomedical Optics, Jun 2021, Munchen (virtual), Germany
Communication dans un congrès hal-03262012 v1
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A More Interpretable Classifier for Multiple Sclerosis

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika
International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice, France. ⟨10.1109/ISBI48211.2021.9434074⟩
Communication dans un congrès hal-03212945 v1

Intraoperative functional and metabolic brain mapping using hyperspectral imaging

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.
Photonic west, Feb 2020, San Francisco, United States. pp.11, ⟨10.1117/12.2545968⟩
Communication dans un congrès hal-02539551 v1
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MRI-based radiomic to predict lipomatous soft tissue tumors malignancy

Benjamin Leporq , Amine Bouhamama , Fabrice Lame , Catherine Bihane , Michaël Sdika et al.
27th Annual meeting of the ISMRM, May 2019, Montréal, Canada
Communication dans un congrès hal-02266792 v1
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Pixel-wise modied Beer-Lambert model for intraoperative functional brain mapping

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Bruno Montcel
European Conferences on Biomedical Optics, Jun 2019, Munich, Germany
Communication dans un congrès hal-02142540 v1

MR SPECTROSCOPY ARTIFACT REMOVAL WITH U-NET CONVOLUTIONAL NEURAL NETWORK

Nima Hatami , Hélène Ratiney , Michaël Sdika
27th Annual meeting of the ISMRM, May 2019, Montreal, Canada
Communication dans un congrès hal-02129946 v1
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Real time intraoperative functional brain mapping using a RGB camera

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.
European Conferences on Biomedical Optics, Jun 2019, Munich, Germany
Communication dans un congrès hal-02142519 v1
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Segmentation of neonates cerebral ventricles with 2D CNN in 3D US data: suitable training-set size and data augmentation strategies

Matthieu Martin , Bruno Sciolla , Michaël Sdika , Philippe Quetin , Philippe Delachartre
2019 IEEE International Ultrasonics Symposium (IUS), Oct 2019, Glasgow, United Kingdom. pp.2122-2125, ⟨10.1109/ULTSYM.2019.8925799⟩
Communication dans un congrès hal-03148378 v1

Neuroimagerie fonctionnelle multispectrale

C. Caredda , L. Mahieu-Williame , R Sablong , Michaël Sdika , L.M. Alston et al.
OPTDIAG, 2018, Paris, Unknown Region
Communication dans un congrès hal-01902495 v1
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Towards handling artefacts in Convolutional Neural Networks-based MRS quantification

Nima Hatami , Michaël Sdika , Hélène Ratiney
ISMRM MRS Workshop, Oct 2018, Utrecht, Netherlands
Communication dans un congrès hal-01904680 v1
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Magnetic Resonance Spectroscopy Quantification using Deep Learning

Nima Hatami , Michaël Sdika , Hélène Ratiney
MICCAI, Oct 2018, Grenada, Spain
Communication dans un congrès hal-01904617 v1
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Towards Integrating Spatial Localization in Convolutional Neural Networks for Brain Image Segmentation

Pierre-Antoine Ganaye , Michael Sdika , Hugues Benoit-Cattin
2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), Apr 2018, Washington, United States. ⟨10.1109/ISBI.2018.8363652⟩
Communication dans un congrès hal-01812045 v1

MRI-based radiomic to assess lipomatous soft tissue tumors malignancy: a pilot study

Benjamin Leporq , Amine Bouhamama , Fabrice Lame , Catherine Bihane , Michael Sdika et al.
International Society of Magnetic Resonance in Medicine and European Society of Magnetic Resonance in Medicine and Biology joint Annual Meeting, Jun 2018, Paris, France
Communication dans un congrès hal-01921659 v1
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Semi-supervised learning for segmentation under semantic constraint

Pierre-Antoine Ganaye , Michaël Sdika , Hugues Benoit-Cattin
MICCAI, Sep 2018, Grenada, Spain
Communication dans un congrès hal-01904641 v1
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Automatic Segmentation of the Cerebral Ventricle in Neonates Using Deep Learning with 3D Reconstructed Freehand Ultrasound Imaging

Matthieu Martin , Bruno Sciolla , Michaël Sdika , Xiaoyu Wang , Philippe Quétin et al.
2018 IEEE International Ultrasonics Symposium (IUS), Oct 2018, Kobe, Japan. pp.1-4, ⟨10.1109/ULTSYM.2018.8580214⟩
Communication dans un congrès hal-02043054 v1

3D MRI Segmentation of muscle through 2D multi-label propagation at 7T

Augustin C. Ogier , Alexandre Fouré , Michaël Sdika , Arnaud Le Troter , Bendahan David
34th Annual Scientific Meeting of the European Society of Magnetic Resonance in Medicine and Biology, European Society of Magnetic Resonance in Medicine and Biology, Oct 2017, Barcelone, Spain
Communication dans un congrès hal-04077604 v1

OptiC: Robust and Automatic Spinal Cord Localization on a Large Variety of MRI Data Using a Distance Transform Based Global Optimization

Charley Gros , Benjamin de Leener , Sara Dupont , Allan R. Martin , Michael G. Fehlings et al.
Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017, Sep 2017, Québec, Canada. pp.712-719, ⟨10.1007/978-3-319-66185-8_80⟩
Communication dans un congrès hal-01713965 v1

Automatic Detection of the Spinal Cord Centerline using Machine Learning and Global Nonlinear Optimization

Michaël Sdika , V. Callot
Recherche en Imagerie et Technologies pour la Santé - RITS 2017, Mar 2017, Lyon, France
Communication dans un congrès hal-01721389 v1

Robust real time motion compensation for intraoperative video processing during neurosurgery

Michaël Sdika , Laure Alston , Laurent Mahieu-Williame , Jacques Guyotat , David Rousseau et al.
IEEE 13th International Symposium on Biomedical Imaging (ISBI 2016), Apr 2016, Prague, Czech Republic. ⟨10.1109/ISBI.2016.7493445⟩
Communication dans un congrès hal-01451713 v1

Improving the spatial resolution and SNR of rat brain T2-weighted MR images: application of a super-resolution method

E. van Reeth van Reeth , Michaël Sdika , S. Gaillard , P.-H. Luppi , P.-A. Libourel et al.
ISMRM 23rd Annual Meeting & Exhibition, May 2015, Toronto, Canada
Communication dans un congrès hal-01288505 v1

Multiple labels point-set registration

E. van Reeth van Reeth , M Sdika , P.-H. Luppi , P.-A. Libourel , O. Beuf
2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), Apr 2015, New-York, United States. pp.609 - 612, ⟨10.1109/ISBI.2015.7163947⟩
Communication dans un congrès hal-01272177 v1

Amélioration de résolution spatiale et SNR d’images cérébrales pondérées T2 de rat : application de la super-résolution

Eric van Reeth van Reeth , Michaël Sdika , Sophie Gaillard , Pierre-Hervé Luppi , Paul-Antoine Libourel et al.
2ème Congrès de la SFRMBM, Mar 2015, Grenoble, France
Communication dans un congrès hal-01288527 v1

MNI-Poly-AMU Average Anatomical Template for Automatic Spinal Cord Measurements

V.S. Fonov , A. Le Troter , M. Taso , Gaëtan Lévêque , M. Benhamou et al.
ISMRM-ESMRMB Annual Meeting 2014, May 2014, Milan, Italy
Communication dans un congrès hal-01117634 v1

Atlas of White-Matter Tracts in the Human Spinal Cord

M. Benhamou , V.S. Fonov , M. Taso , A. Le Troter , Michaël Sdika et al.
ISMRM-ESMRMB Annual Meeting 2014, May 2014, Milan, Italy
Communication dans un congrès hal-01117699 v1

Validation of a 2D Spinal Cord Probabilistic Atlas. Application to FA Measurement and VBM Study of the GM Atrophy Occurring with Age

M. Taso , A. Le Troter , Michaël Sdika , V.S. Fonov , J. Cohen-Adad et al.
ISMRM-ESMRMB Annual Meeting 2014, May 2014, Milan, France
Communication dans un congrès hal-01117689 v1

Démonstrateur en imagerie à vocation diagnostique dans le cadre de l'AVC

C. Frindel , H. Rositi , Michaël Sdika , F. Chauveau , T.-H. Cho et al.
4èmes Journées Démonstrateurs 2013, Jun 2013, Angers, France
Communication dans un congrès hal-00849981 v1

Liver perfusion quantification with MR-DCE imaging at 3.0 T for liver fibrosis assessment in patients with chronic liver diseases

Benjamin Leporq , Franck Pilleul , Jérôme Dumortier , Olivier Guillaud , Thibaud Lefort et al.
ISMRM 21st Annual Meeting & Exhibition, Apr 2013, Salt-Lake City, United States. pp.3911
Communication dans un congrès hal-01128036 v1

Optimal Recombination of Multi-Coils CSI Data using Image Based Sensitivity Map

Michaël Sdika , Y. Le Fur , P. . Cozzone
20th Annual meeting of the ISMRM, 2011, Montreal, Canada. pp.3478
Communication dans un congrès hal-01902502 v1

Towards a biochemical and structure specific quantitative analysis of the mouse brain using Magnetic Resonance Spectroscopic Imaging at 11.7T

H. Ratiney , Michaël Sdika , O. Beuf , Y. Le Fur , S. Cavassila
Journées Thématiques GDR "Imagerie in vivo" (IMAGIV), 2011, Paris, Unknown Region
Communication dans un congrès hal-01879479 v1

Vascular Alterations and Recruitment in Spinal Cord Injury Revealed by Multislice Arterial Spin Labeling (ASL) Perfusion Imaging

Guillaume Duhamel , Tanguy Marqueste , Michaël Sdika , M. Tachrount , P. Decherchi et al.
ISMRM-ESMRMB Joint Annual Meeting, 2011, Stockholm, Sweden. pp.5092
Communication dans un congrès hal-01902500 v1

Multi Atlas Segmentation of Rat Leg Muscles

Michaël Sdika , A. Tonson , P. . Cozzone , D. Bendahan
20th Annual meeting of the ISMRM, 2011, Montreal, Canada. pp.2562
Communication dans un congrès hal-01902503 v1

A Fully Automated White Matter/Gray Matter Segmentation of Mice Spinal Cord on DTI Images

Michaël Sdika , V. Callot , M Hebert , Guillaume Duhamel , P.J. Cozzone
ISMRM-ESMRMB Joint Annual Meeting, 2010, Stockholm, Sweden. pp.442
Communication dans un congrès hal-01902505 v1

Short Echo Time H1 Chemical Shift Imaging data quantification in the mouse brain at 11.7T using a constrained parametric macromolecular model

H. Ratiney , Y. Le Fur , Michaël Sdika , S. Cavassila
ISMRM-ESMRMB Joint Annual Meeting, 2010, Stockholm, Sweden
Communication dans un congrès hal-01879492 v1

Segmentation of the Structure of the Mouse Spinal Cord on DTI images

Michaël Sdika , V. Callot , M Hebert , Guillaume Duhamel , P.J. Cozzone
ISMRM-ESMRMB Joint Annual Meeting, 2010, Stockholm, Sweden. pp.5115
Communication dans un congrès hal-01902504 v1

Towards structure specific macromolecular content of mouse brain from Chemical Shift Imaging data at 11.7T

H. Ratiney , Michaël Sdika , O. Beuf , Y. Le Fur , S. Cavassila
ISMRM, 2009, Hawai, United States. pp.3293
Communication dans un congrès hal-01879496 v1

Quantitative assessment of the brain macromolecular content in a mouse model of neuro-inflammation from chemical shift imaging data at 11.7T

H. Ratiney , Y. Le Fur , Michaël Sdika , M. Touret , A. Bernard et al.
ESMRMB, 2009, Antalya, Turkey. pp.39
Communication dans un congrès hal-01879500 v1

Effective Voigt model estimation using multiple random starting values and parameter bounds settings for in vivo hepatic 1H Magnetic Resonance Spectroscopy data

H. Ratiney , A. Bucur , Michaël Sdika , O. Beuf , F. Pilleul et al.
IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008, Paris, France. pp.1529-1532, ⟨10.1109/ISBI.2008.4541300⟩
Communication dans un congrès hal-01879508 v1

Regional Estimation of T1 Metabolite Relaxation using 2D MRSI and a Bootstrap Approach at 1.5T

H. Ratiney , S.M. Noworolski , Michaël Sdika , R. Srinivasan , R.G. Henry et al.
Int. Soc. Magnetic Resonance in Medicine, 14th Scientific Meeting and Exhibition, 2006, Seattle, Washington, USA, Unknown Region
Communication dans un congrès hal-01879435 v1

Semi-Parametric estimation in In vivo MR Spectroscopy

H. Ratiney , E. Capobianco , Michaël Sdika , H. Rabeson , C. Cudalbu et al.
ProRISC, IEEE Benelux, 2005, Veldhoven, The, Netherlands. pp.658-667
Communication dans un congrès hal-01879442 v1

PhotoMole: retrieval from a database of natural images

Matthijs Douze , Michaël Sdika , Cordelia Schmid
CVPR'05 - IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Jun 2005, San Diego, United States. pp.1-4
Communication dans un congrès hal-01902510 v1
Image document

Construction et apprentissage sous contraintes de réseaux monotones pour une classification interprétable et la détection d'anomalies

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika
Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale, Mar 2024, Grenoble, France
Poster de conférence hal-04531799 v1
Image document

Robust Unsupervised Image to Template Registration Without Image Similarity Loss

Slim Hachicha , Célia Le , Valentine Wargnier-Dauchelle , Michaël Sdika
Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale, IABM, Feb 2024, Grenoble, France
Poster de conférence hal-04531824 v1
Image document

HyperProbe: Transforming brain surgery by advancing functional-guided neuronavigational imaging

Charly Caredda , Luca Giannoni , Frédéric Lange , Ivan Ezhov , Adithep Kawinkij et al.
RITS 2024, Jun 2024, Aubière / Clermont-Ferrand, France
Poster de conférence hal-04958946 v1

Une contrainte faiblement supervisée sur les attributions basées sur le gradient pour une classification interprétable et la détection d'anomalies

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , Francois Cotton , Michael Sdika
Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM 2023), Mar 2023, Paris, France
Poster de conférence hal-04239875 v1
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Experimental decorrelation requirement for robust estimation of fluorophores using multiple-wavelength excitation fluorescence spectroscopy

Arthur Gautheron , Michaël Sdika , Jacques Guyotat , Thiébaud Picart , Laure Alston et al.
Diffuse Optical Spectroscopy and Imaging, Jun 2023, Munich, France. SPIE; SPIE, pp.87, 2023, ⟨10.1117/12.2670879⟩
Poster de conférence hal-04187600 v1
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Digital modeling of a heterogeneous and dynamic brain phantom: application to the choice of an RGB camera for intraoperative functional brain mapping studies

C. Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Bruno Montcel et al.
European Conferences on Biomedical Optics 2023, Jun 2023, Munchen, Germany. SPIE, pp.76, 2023, ⟨10.1117/12.2670750⟩
Poster de conférence hal-04181637 v1
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Towards quantitative multispectral excitation fluorescence spectroscopy for intraoperative assistance in glioma resection in neurosurgery

Arthur Gautheron , Mathieu Hébert , Michaël Sdika , Vincent Duveiller , Lionel Simonot et al.
Journée partenariat du LabEx PRIMES, Jun 2022, Lyon, France
Poster de conférence hal-03700745 v1
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Comparison of intraoperative functional brain map obtained with RGB imaging with preoperative functional brain map obtained with functional magnetic Resonance imaging

Anne Josset , C. Caredda , Eric van Reeth van Reeth , L. Mahieu-Williame , Raphaël Sablong et al.
fNIRS 2021, Oct 2021, London, United Kingdom
Poster de conférence hal-03420561 v1
Image document

Intraoperative functional brain mapping based on RGB imaging

C. Caredda , L. Mahieu-Williame , R. Sablong , M Sdika , J. Guyotat et al.
fNIRS UK, Sep 2019, Birmingham, United Kingdom
Poster de conférence hal-02894964 v1
Image document

Real time intraoperative functional brain mapping using a RGB camera

C. Caredda , L. Mahieu-Williame , R. Sablong , M Sdika , J. Guyotat et al.
Colloque RITS, May 2019, Tours, France
Poster de conférence hal-02142491 v1
Image document

Neuroimagerie fonctionnelle multispectrale interventionnelle

C. Caredda , L. Mahieu-Williame , R. Sablong , M Sdika , L. Alston et al.
OptDiag 2018, May 2018, Paris, France
Poster de conférence hal-02894966 v1

MRI-Based Radiomic to Assess Lipomatous Soft Tissue Tumors Malignancy: A Pilot Study

Benjamin Leporq , Amine Bouhamama , F. Lame , Catherine Bihane , Michaël Sdika et al.
Forum de la recherche en Cancérologie 2018, Apr 2018, Villeurbanne, France
Poster de conférence hal-01990614 v1

Segmentation des muscles individuels en IRM basée sur des approches de recalage non-linéaire

Augustin C. Ogier , Michaël Sdika , Alexandre Fouré , Arnaud Le Troter , David Bendahan
3ème Congrès de la Société Française de Résonance Magnétique en Biologie et Médecine (SFRMBM), Mar 2017, Bordeaux, France. 2017
Poster de conférence hal-01560300 v1

An accurate supervised segmentation of 3D individual lower leg muscles from 7T-MRI using label propagation

Augustin C. Ogier , Alexandre Fouré , Michaël Sdika , Arnaud Le Troter , David Bendahan
MYO-MRI, Imaging in Neuromuscular Disease, Nov 2017, Berlin, Germany
Poster de conférence hal-02000564 v1

Segmentation d’images IRM à 7T des muscles individuels basée sur des approches de propagation de masques

Augustin C. Ogier , Alexandre Fouré , Michaël Sdika , Arnaud Le Troter , David Bendahan
15es Journées de la Société Française de Myologie (JSFM), Nov 2017, Colmar, France
Poster de conférence hal-02000426 v1

Repeatability and reproducibility of in vivo magnetic resonance T1rho relaxation time measurements of hip cartilage at 3T

Angéline Nemeth , Lucy Di Marco , Denis Grenier , Michaël Sdika , Olivier Beuf et al.
ISMRM 2016, May 2016, Singapour, Singapore. pp.Abstract #4490
Poster de conférence hal-01434177 v1