Michaël Sdika

139
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Publications

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Explainable Monotonic Networks and Constrained Learning for Interpretable Classification and Weakly Supervised Anomaly Detection

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika

Pattern Recognition, 2025, 160, pp.111186. ⟨10.1016/j.patcog.2024.111186⟩

Article dans une revue hal-04776992v2

Fluorescence spectroscopy precorrection model robust to large variability of optical properties: application to point of care quantitative liver graft viability assessment

Antoine Uzel , Arthur Gautheron , Olivier Lopez , Guillaume Rossignol , Xavier Muller et al.

Biomedical optics express, 2025, ⟨10.1364/BOE.587424⟩

Article dans une revue hal-05427625v1
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Comparing Different Methods for the Diagnosis of Liver Steatosis: What Are the Best Diagnostic Tools?

Sophie Chopinet , Olivier Lopez , Sophie Brustlein , Antoine Uzel , Anais Moyon et al.

Diagnostics, 2024, 14 (20), pp.2292. ⟨10.3390/diagnostics14202292⟩

Article dans une revue hal-04820344v1
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Evaluation of deep learning models for quality control of MR spectra

Sana Vaziri , Huawei Liu , Emily Xie , Helene Ratiney , Michaël Sdika et al.

Frontiers in Neuroscience, 2023, 17, ⟨10.3389/fnins.2023.1219343⟩

Article dans une revue hal-04214565v1

A priori free spectral unmixing with periodic absorbance changes: application for auto-calibrated intraoperative functional brain mapping

Charly Caredda , Jérémy Cohen , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika et al.

Biomedical optics express, 2023, 15 (1), pp.387. ⟨10.1364/BOE.491292⟩

Article dans une revue hal-04369614v1
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A Weakly Supervised Gradient Attribution Constraint for Interpretable Classification and Anomaly Detection

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika

IEEE Transactions on Medical Imaging, 2023, ⟨10.1109/TMI.2023.3282789⟩

Article dans une revue hal-04110698v2
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An explicit Estimated Baseline Model for Robust Estimation of Fluorophores using Multiple-Wavelength Excitation Fluorescence Spectroscopy

Arthur Gautheron , M. Sdika , M. Hébert , B. Montcel

IEEE Transactions on Biomedical Engineering, 2023, 71 (1), pp.295-306. ⟨10.1109/TBME.2023.3299689⟩

Article dans une revue hal-04188757v1
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Intraoperative identification of functional brain areas with RGB imaging using statistical parametric mapping: Simulation and clinical studies

Charly Caredda , E. van Reeth , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika et al.

NeuroImage, 2023, pp.120286. ⟨10.1016/j.neuroimage.2023.120286⟩

Article dans une revue hal-04170059v1
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Automatic Segmentation and Location Learning of Neonatal Cerebral Ventricles in 3D Ultrasound Data Combining CNN and CPPN

Matthieu Martin , Bruno Sciolla , Michaël Sdika , Philippe Quetin , Philippe Delachartre

Computers in Biology and Medicine, 2021, pp.104268. ⟨10.1016/j.compbiomed.2021.104268⟩

Article dans une revue hal-03148181v1
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Intraoperative Resting-State Functional Connectivity Based on RGB Imaging

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Fabien Schneider et al.

Diagnostics, 2021, 11 (11), pp.2067. ⟨10.3390/diagnostics11112067⟩

Article dans une revue hal-03423345v1
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Real Time Intraoperative Functional Brain Mapping Based on RGB Imaging

C. Caredda , L. Mahieu-Williame , R. Sablong , M. Sdika , J. Guyotat et al.

Innovation and Research in BioMedical engineering, 2020, ⟨10.1016/j.irbm.2020.04.004⟩

Article dans une revue hal-02568247v1

Optimal Spectral Combination of a Hyperspectral Camera for Intraoperative Hemodynamic and Metabolic Brain Mapping

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.

Applied Sciences, 2020, 10 (15), pp.5158. ⟨10.3390/app10155158⟩

Article dans une revue hal-02908361v1

MRI-based radiomics to predict lipomatous soft tissue tumors malignancy: a pilot study

Benjamin Leporq , Amine Bouhamama , Frank Pilleul , Fabrice Lame , Catherine Bihane et al.

Cancer Imaging, 2020, 20 (1), pp.Article number: 78. ⟨10.1186/s40644-020-00354-7⟩

Article dans une revue hal-03107185v1
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Diffeomorphic B-Spline Vector Fields With a Tractable Set of Inequalities

Michaël Sdika

Mathematics of Computation, 2019, 88 (320), pp.2827--2856. ⟨10.1090/mcom/3419⟩

Article dans une revue hal-01956237v1

Corrigendum to “Automatic myocardial ischemic lesion detection on magnetic resonance perfusion weighted imaging prior perfusion quantification: A pre-modeling strategy” [Comput. Biol. Med. 110 (2019) 108–119]

Clément Daviller , Thomas Grenier , Hélène Ratiney , Michaël Sdika , Pierre Croisille et al.

Computers in Biology and Medicine, 2019, 114, pp.103455. ⟨10.1016/j.compbiomed.2019.103455⟩

Article dans une revue hal-03009072v1
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Automatic myocardial ischemic lesion detection on magnetic resonance perfusion weighted imaging prior perfusion quantification: A pre-modeling strategy

Clément Daviller , Thomas Grenier , Hélène Ratiney , Michaël Sdika , Pierre Croisille et al.

Computers in Biology and Medicine, 2019, 110, pp.108-119. ⟨10.1016/j.compbiomed.2019.05.001⟩

Article dans une revue hal-02135018v1
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Intraoperative quantitative functional brain mapping using an RGB camera

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Laure Alston et al.

Neurophotonics, 2019, 6 (04), pp.1. ⟨10.1117/1.NPh.6.4.045015⟩

Article dans une revue hal-02425832v1
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Repetitive Motion Compensation for Real Time Intraoperative Video Processing

Michaël Sdika , Laure Alston , David Rousseau , Jacques Guyotat , Laurent Mahieu-Williame et al.

Medical Image Analysis, 2019, 53, pp.1-10. ⟨10.1016/j.media.2018.12.005⟩

Article dans une revue hal-01974104v2
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Removing Segmentation Inconsistencies with Semi-Supervised Non-Adjacency Constraint

Pierre-Antoine Ganaye , Michaël Sdika , Bill Triggs , Hugues Benoit-Cattin

Medical Image Analysis, 2019, 58, pp.101551. ⟨10.1016/j.media.2019.101551⟩

Article dans une revue hal-02275956v1
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Automatic spinal cord localization, robust to MRI contrasts using global curve optimization

Charley Gros , Benjamin de Leener , Sara Dupont , Allan Martin , Michael Fehlings et al.

Medical Image Analysis, 2018, 44, pp.215-227. ⟨10.1016/j.media.2017.12.001⟩

Article dans une revue hal-01690881v1

Reproducibility of in vivo magnetic resonance imaging T 1 rho and T 2 relaxation time measurements of hip cartilage at 3.0T in healthy volunteers

Angeline Nemeth , Lucy Di Marco , Florent Boutitie , Michael Sdika , Denis Grenier et al.

Journal of Magnetic Resonance Imaging, 2017, 47 (4), pp.1022-1033. ⟨10.1002/jmri.25799⟩

Article dans une revue hal-01560104v1

Multi-atlas-based fully automatic segmentation of individual muscles in rat leg

Michaël Sdika , Anne Tonson , Yann Le Fur , Patrick J Cozzone , David Bendahan

Magnetic Resonance Materials in Physics, Biology and Medicine, 2016, 29 (2), pp.223-235. ⟨10.1007/s10334-015-0511-6⟩

Article dans une revue hal-01375862v1

A reliable spatially normalized template of the human spinal cord - Applications to automated white matter/gray matter segmentation and tensor-based morphometry (TBM) mapping of gray matter alterations occurring with age

Manuel Taso , Arnaud Le Troter , Michaël Sdika , Julien Cohen-Adad , Pierre-Jean Arnoux et al.

NeuroImage, 2015, 117, p.20-28. ⟨10.1016/j.neuroimage.2015.05.034⟩

Article dans une revue hal-01414352v1
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misoSR: Medical Image Isotropic Super-Resolution Reconstruction

Eric van Reeth van Reeth , Geetha Soujanya , Michaël Sdika , Frederic Cervenansky , Chueh Loo Poh

Midas Journal, 2015

Article dans une revue hal-01799683v1
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Enhancing atlas based segmentation with multiclass linear classifiers

Michaël Sdika

Medical Physics : The international journal of medical physics research and practice, 2015, 42, pp.7169. ⟨10.1118/1.4935946⟩

Article dans une revue hal-01375850v1

Framework for integrated MRI average of the spinal cord white and gray matter: The MNI–Poly–AMU template

V.S. Fonov , A. Le Troter , M. Taso , B. de Leener , Gaëtan Lévêque et al.

NeuroImage, 2014, 102 (Pt2), pp.817-827. ⟨10.1016/j.neuroimage.2014.08.057⟩

Article dans une revue hal-01117512v1

Fast multidimensional NMR spectroscopy for sparse spectra

D. Merhej , H. Ratiney , C. Diab , M. Khalil , Michaël Sdika et al.

NMR in Biomedicine, 2014, 27 (6), pp.640-655. ⟨10.1002/nbm.3100⟩

Article dans une revue istex hal-00977517v1

Construction of an in vivo human spinal cord atlas based on high-resolution MR images at cervical and thoracic levels: preliminary results

M Taso , A Le Troter , M Sdika , Jean-Philippe Ranjeva , M Guye et al.

Magnetic Resonance Materials in Physics, Biology and Medicine, 2013, 27, pp.257-267

Article dans une revue hal-01097040v1
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A Sharp Sufficient Condition for B-Spline Vector Field Invertibility. Application to Diffeomorphic Registration and Interslice Interpolation.

Michaël Sdika

SIAM Journal on Imaging Sciences, 2013, 6 (4), pp.2236-2257. ⟨10.1137/120879920⟩

Article dans une revue hal-01902498v1

A genome-wide association study of brain lesion distribution in multiple sclerosis.

P.A. Gourraud , Michaël Sdika , P. Khankhanian , R.G. Henry , A. Beheshtian et al.

Brain - A Journal of Neurology , 2013, 136, pp.1012-24. ⟨10.1093/brain/aws363⟩

Article dans une revue hal-01902499v1

Bootstrap quantification of cardiac pulsation artifact in DTI

S. Chung , B. Courcot , Michaël Sdika , K. Moffat , C. Rae et al.

NeuroImage, 2010, 49 (1), pp.631-40

Article dans une revue hal-00617749v1
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Combining atlas based segmentation and intensity classification with nearest neighbor transform and accuracy weighted vote

Michaël Sdika

Medical Image Analysis, 2010, 14 (2), pp.219-26. ⟨10.1016/j.media.2009.12.004⟩

Article dans une revue hal-00617791v1
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Nonrigid registration of multiple sclerosis brain images using lesion inpainting for morphometry or lesion mapping.

Michaël Sdika , Daniel Pelletier

Human Brain Mapping, 2009, 30, pp.1060-7. ⟨10.1002/hbm.20566⟩

Article dans une revue istex hal-01902507v1

Whole brain voxel-wise analysis of single-subject serial DTI by permutation testing.

S. Chung , D. Pelletier , Michaël Sdika , Y. Lu , I. Berman et al.

NeuroImage, 2008, 39, pp.1693-705. ⟨10.1016/j.neuroimage.2007.10.039⟩

Article dans une revue hal-01902508v1
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A Fast Nonrigid Image Registration With Constraints on the Jacobian Using Large Scale Constrained Optimization

Michaël Sdika

IEEE Transactions on Medical Imaging, 2008, 27 (2), pp.271-281. ⟨10.1109/TMI.2007.905820⟩

Article dans une revue hal-02073305v1

Estimation of metabolite T1 relaxation times using tissue specific analysis, signal averaging and bootstrapping from magnetic resonance spectroscopic imaging data

H. Ratiney , S. M. Noworolski , Michaël Sdika , R. Srinivasan , R. G. Henry et al.

Magn Reson Mater Phy Biol Med, 2007, 20 (3), pp.143-155

Article dans une revue hal-00443421v1
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Boundary conditions for Young - van Vliet recursive filtering

Bill Triggs , Michaël Sdika

IEEE Transactions on Signal Processing, 2006, 54 (6), pp.2365 - 2367. ⟨10.1109/TSP.2006.871980⟩

Article dans une revue inria-00548616v1

Time-Domain Semi-Parametric Estimation Based on a Metabolite Basis Set

H. Ratiney , Michaël Sdika , Y. Coenradie , S. Cavassila , D. van Ormondt et al.

Nuclear Magnetic Resonance in Biomedicine, 2005, 18, pp.1-13

Article dans une revue hal-00443422v1
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Joint reconstruction and pansharpening for high-resolution hyperspectral single-pixel imaging

Thomas Maitre , Elie Bretin , Nicolas Ducros , Michaël Sdika

International Conference on Acoustics, Speech, and Signal Processing, May 2026, Barcelona, Spain

Communication dans un congrès hal-05298892v2
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Towards Better Interpretability of Sepsis Prediction by Deep Neural Networks with Variable-wise Attribution Maps

P.-E Thiboud , V Wargnier-Dauchelle , M Lefort , N Duchateau , M Sdika

2025 IEEE International Symposium on Biomedical Imaging (ISBI), Apr 2025, Houston (Texas), United States

Communication dans un congrès hal-04776927v3

Liver Steatosis Evaluation in Transplantation: Near-Infrared Diffuse reflectance Spectroscopy

Antoine Uzel , Michaël Sdika , Olivier Lopez , Sophie Chopinet , Pauline Brige et al.

European Conference on Biomedical Optics, Jun 2025, München, France. pp.M4B.1, ⟨10.1364/ECBO.2025.M4B.1⟩

Communication dans un congrès hal-05423810v1

Intraoperative Glioma Delineation with robust estimation of 5-ALA-Induced PpIX Contributions in Multiple-Wavelength Excitation Fluorescence Spectroscopy : Application on Clinical data

Arthur Gautheron , M. Sdika , J. Guyotat , A. Uzel , D. Meyronet et al.

European Conference on Biomedical Optics, 2025, München, France. pp.Th4A.5, ⟨10.1364/ECBO.2025.Th4A.5⟩

Communication dans un congrès hal-05269500v1
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Automated registration of intraoperative optical images with preoperative MRI

Charly Caredda , Eric Van-Reeth , Fernand Fort , Michaël Sdika , Thiébaud Picart et al.

European Conference on Biomedical Optics, Jun 2025, Munich, Germany. pp.M3A.15, ⟨10.1364/ECBO.2025.M3A.15⟩

Communication dans un congrès hal-05385068v1
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Vers une meilleure interprétabilité des réseaux de neurones pour la prédiction du sepsis via des cartes d'attribution variable par variable

Pierre-Elliott Thiboud , Valentine Wargnier-Dauchelle , Mathieu Lefort , Nicolas Duchateau , Michaël Sdika

Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM), Mar 2025, Nice, France

Communication dans un congrès hal-04971677v1

Optical Properties Corrected Fluorescence Spectroscopy for Liver Graft Viability Monitoring

Antoine Uzel , M. Sdika , Guillaume Rossignol , Xavier Muller , N. Boulanger et al.

European Conference on Biomedical Optics, Jun 2025, München, France. pp.Tu1A.6, ⟨10.1364/ECBO.2025.Tu1A.6⟩

Communication dans un congrès hal-05423811v1

Near infrared diffuse reflectance spectroscopy quantification in fatty liver disease

Antoine Uzel , Olivier Lopez , Sophie Chopinet , Michaël Sdika , Bruno Montcel

Tissue Optics and Photonics III, Apr 2024, Strasbourg, France. pp.8, ⟨10.1117/12.3017175⟩

Communication dans un congrès hal-04628154v1
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Application on Clinical Data of Robust Estimation of PpIX in Multispectral Excited Fluorescence Spectroscopy

Arthur Gautheron , Michaël Sdika , J. Guyotat , antoine uzel , David Meyronet et al.

RITS 2024, Jun 2024, Clermond - Ferrand, France

Communication dans un congrès hal-04617157v1

Near infrared diffuse reflectance spectroscopy for fat quantification in fatty liver disease

Antoine Uzel , Michaël Sdika , Sophie Chopinet , Olivier Lopez , Bruno Montcel

Advanced Biomedical and Clinical Diagnostic and Surgical Guidance Systems XXII, Jan 2024, San-Francisco, United States. pp.29, ⟨10.1117/12.3001895⟩

Communication dans un congrès hal-04628102v1
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Dynamic Single-Pixel Imaging on an Extended Field of View without Warping the Patterns

Thomas Maitre , Elie Bretin , Romain Phan , Nicolas Ducros , Michaël Sdika

International Conference on Medical Image Computing and Computer Assisted Intervention, Oct 2024, Marrakech, Morocco. pp 275-284, ⟨10.1007/978-3-031-72104-5_27⟩

Communication dans un congrès hal-04533981v2
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Hybrid single-pixel camera for dynamic hyperspectral imaging

Thomas Maitre , Elie Bretin , Laurent Mahieu-Williame , Michaël Sdika , Nicolas Ducros

2024 IEEE International Symposium on Biomedical Imaging (ISBI), May 2024, Athens, France. pp.1-5, ⟨10.1109/ISBI56570.2024.10635884⟩

Communication dans un congrès hal-04310110v2
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An unexpected confounder: how brain shape can be used to classify MRI scans ?

Valentine Wargnier-Dauchelle , Thomas Grenier , Michaël Sdika

Medical Imaging with Deep Learning, Jul 2024, Paris, France

Communication dans un congrès hal-04561863v1
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The Impact of Hardware Variability on Applications Packaged with Docker and Guix: a Case Study in Neuroimaging

Gaël Vila , Emmanuel Medernach , Inés Gonzalez , Axel Bonnet , Yohan Chatelain et al.

ACM REP'24, ACM, Jun 2024, Rennes, France. pp.75-84, ⟨10.1145/3641525.3663626⟩

Communication dans un congrès hal-04480308v2

Evaluation of liver viability for transplantation by fluorescence spectroscopy

Antoine Uzel , Olivier Lopez , Arthur Gautheron , Guillaume Rossignol , Xavier Muller et al.

Photonics Europe 2024, Apr 2024, Strasbourg, France. pp.PC130090F, ⟨10.1117/12.3017172⟩

Communication dans un congrès hal-04617068v1
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Quantification de graisse pour la stéatose hépatique par spectroscopie proche infrarouge en réflectance diffuse

A Uzel , Olivier Lopez , S Chopinet , M Sdika , B Montcel

Recherche en Imagerie et Technologies pour la Santé 2024, Jun 2024, Aubière, France

Communication dans un congrès hal-04628297v1

Robust estimation of 5-ALA-induced PpIX contributions in multiple-wavelength excitation fluorescence spectroscopy to improve intraoperative glioma detection: application on clinical data

Arthur Gautheron , Michaël Sdika , Jacques Guyotat , Antoine Uzel , David Meyronet et al.

Photonics Europe 2024, Apr 2024, Strasbourg, France. pp.1300908, ⟨10.1117/12.3022093⟩

Communication dans un congrès hal-04617079v1

Pixel-wise and real-time estimation of optical mean path length using deep learning: application for intraoperative functional brain mapping

Charly Caredda , Ivan Ezhov , Michaël Sdika , Frédéric Lange , Luca Giannoni et al.

Clinical Biophotonics III, Apr 2024, Strasbourg, France. pp.35, ⟨10.1117/12.3016632⟩

Communication dans un congrès hal-04661800v1
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Constrained non-negative networks for a more explainable and interpretable classification

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika

Medical Imaging with Deep Learning, Jul 2024, Paris, France

Communication dans un congrès hal-04561860v1

HyperProbe consortium: innovate tumour neurosurgery with innovative photonic solutions

Charly Caredda , Luca Giannoni , Frédéric Lange , Ivan Ezhov , Adithep Kawinkij et al.

SFNR 2024, Société Française de Neuroradiologie, Mar 2024, Paris, France

Communication dans un congrès hal-04959009v1

Near infrared diffuse reflectance spectroscopy for fat quantification in non-alcoholic fatty liver disease

Antoine Uzel , Michaël Sdika , Sophie Chopinet , Olivier Lopez , Bruno Montcel

Diffuse Optical Spectroscopy and Imaging, Jun 2023, Munich, Germany. pp.60, ⟨10.1117/12.2669268⟩

Communication dans un congrès hal-04279251v1
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Robust Unsupervised Image to Template Registration Without Image Similarity Loss

Slim Hachicha , Célia Le , Valentine Wargnier-Dauchelle , Michaël Sdika

Medical Image Learning with Limited and Noisy Data, Second International Workshop, MILLanD 2023, Held in Conjunction with MICCAI 2023, Vancouver, Proceedings, Oct 2023, Vancouver, Canada

Communication dans un congrès hal-04183379v1

Separable spectral unmixing based on the learning of periodic absorbance changes: application to functional brain mapping using RGB imaging

C. Caredda , Jérémy Cohen , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika et al.

European Conferences on Biomedical Optics, 2023, Munich, Germany, SPIE, Jun 2023, Munchen, Germany. pp.44, ⟨10.1117/12.2670506⟩

Communication dans un congrès hal-04181635v1
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Reproducibility of Tumor Segmentation Outcomes with a Deep Learning Model

Morgane Des Ligneris , Axel Bonnet , Yohan Chatelain , Tristan Glatard , Michaël Sdika et al.

International Symposium on Biomedical Imaging (ISBI), Apr 2023, Cartagena de Indias, Colombia. ⟨10.1109/ISBI53787.2023.10230482⟩

Communication dans un congrès hal-04006057v1

Design of brain simulating liquid and numeric phantoms for evaluating hemodynamic changes in intraoperative functional brain mapping studies

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.

Clinical Biophotonics II, Apr 2022, Strasbourg, France. pp.37, ⟨10.1117/12.2621235⟩

Communication dans un congrès hal-03687207v1

Comparison of intraoperative functional brain maps obtained with RGB imaging with preoperative functional magnetic resonance Imaging maps: a task-based and resting-state study

Charly Caredda , Anne Josset , Eric van Reeth van Reeth , Laurent Mahieu-Williame , Raphaël Sablong et al.

Clinical Biophotonics II, Apr 2022, Strasbourg, France. pp.14, ⟨10.1117/12.2621507⟩

Communication dans un congrès hal-03687220v1

Intraoperative optical imaging for neurosurgery guidance

Charly Caredda , Laure Alston , Arthur Gautheron , L. Mahieu-Williame , Bruno Montcel et al.

Journées de la Recherche en Imagerie et Technologies pour la Santé (RITS ) 2022, May 2022, Brest, France

Communication dans un congrès hal-03700652v1
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Robust Estimation of 5-ALA Induced PpIX Multiple-Wavelength Excitation Fluorescence Spectroscopy for Improving Glioma Classification

Arthur Gautheron , Michaël Sdika , Mathieu Hébert , Bruno Montcel

SPIE Photonics Europe, Clinical Biophotonics II ; SPIE proceedings, Apr 2022, Strasbourg, France. pp.1214607, ⟨10.1117/12.2620945⟩

Communication dans un congrès hal-03665499v1

Estimation of Fluorescence Contributions using Multiple-Wavelength Excitation: the example of PpIX for improving Glioma Classification

Arthur Gautheron , Michael Sdika , Mathieu Hébert , Bruno Montcel

Journées Imagerie Optique Non Conventionnelle (JIONC), Mar 2022, Paris, France

Communication dans un congrès hal-03597733v1

Un Classifieur plus Interprétable pour la SEP

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika

Congrès Société Française de Résonance Magnétique en Biologie et Médecine (SFRMBM), Sep 2021, Lyon, France

Communication dans un congrès hal-03212961v1
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Intraoperative Statistical Parametric Brain Mapping using RGB Imaging

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.

European Conferences on Biomedical Optics, Jun 2021, Munchen, Germany

Communication dans un congrès hal-03261989v1

Application of Deep Leaning Model for Quality Control of Short-echo 7T MRSI with Various Disease Types

Huawei Liu , Emilie Xie , H. Ratiney , Michaël Sdika , Yan Li

2021 ISMRM & SMRT Annual Meeting, May 2021, virtual Vancouver, Canada

Communication dans un congrès hal-03519714v1
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Intraoperative Resting State Functional Connectivity Based on RGB Imaging

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Fabien C Schneider et al.

European Conferences on Biomedical Optics, Jun 2021, Munchen (virtual), Germany

Communication dans un congrès hal-03262003v1
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Optimal Spectral Combination of a Hyperspectral Camera for Intraoperative Hemodynamic and Metabolic Brain Mapping

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.

European Conferences on Biomedical Optics, Jun 2021, Munchen (virtual), Germany

Communication dans un congrès hal-03262012v1
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A More Interpretable Classifier for Multiple Sclerosis

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika

International Symposium on Biomedical Imaging (ISBI), Apr 2021, Nice, France. ⟨10.1109/ISBI48211.2021.9434074⟩

Communication dans un congrès hal-03212945v1

Intraoperative functional and metabolic brain mapping using hyperspectral imaging

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.

Photonic west, Feb 2020, San Francisco, United States. pp.11, ⟨10.1117/12.2545968⟩

Communication dans un congrès hal-02539551v1

MR SPECTROSCOPY ARTIFACT REMOVAL WITH U-NET CONVOLUTIONAL NEURAL NETWORK

Nima Hatami , Hélène Ratiney , Michaël Sdika

27th Annual meeting of the ISMRM, May 2019, Montreal, Canada

Communication dans un congrès hal-02129946v1
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Pixel-wise modied Beer-Lambert model for intraoperative functional brain mapping

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Bruno Montcel

European Conferences on Biomedical Optics, Jun 2019, Munich, Germany

Communication dans un congrès hal-02142540v1
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MRI-based radiomic to predict lipomatous soft tissue tumors malignancy

Benjamin Leporq , Amine Bouhamama , Fabrice Lame , Catherine Bihane , Michaël Sdika et al.

27th Annual meeting of the ISMRM, May 2019, Montréal, Canada

Communication dans un congrès hal-02266792v1
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Real time intraoperative functional brain mapping using a RGB camera

Charly Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Jacques Guyotat et al.

European Conferences on Biomedical Optics, Jun 2019, Munich, Germany

Communication dans un congrès hal-02142519v1
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Segmentation of neonates cerebral ventricles with 2D CNN in 3D US data: suitable training-set size and data augmentation strategies

Matthieu Martin , Bruno Sciolla , Michaël Sdika , Philippe Quetin , Philippe Delachartre

2019 IEEE International Ultrasonics Symposium (IUS), Oct 2019, Glasgow, United Kingdom. pp.2122-2125, ⟨10.1109/ULTSYM.2019.8925799⟩

Communication dans un congrès hal-03148378v1
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Towards Integrating Spatial Localization in Convolutional Neural Networks for Brain Image Segmentation

Pierre-Antoine Ganaye , Michael Sdika , Hugues Benoit-Cattin

2018 IEEE 15th International Symposium on Biomedical Imaging (ISBI 2018), Apr 2018, Washington, United States. ⟨10.1109/ISBI.2018.8363652⟩

Communication dans un congrès hal-01812045v1
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Magnetic Resonance Spectroscopy Quantification using Deep Learning

Nima Hatami , Michaël Sdika , Hélène Ratiney

MICCAI, Oct 2018, Grenada, Spain

Communication dans un congrès hal-01904617v1

Neuroimagerie fonctionnelle multispectrale

C. Caredda , L. Mahieu-Williame , R Sablong , Michaël Sdika , L.M. Alston et al.

OPTDIAG, 2018, Paris, Unknown Region

Communication dans un congrès hal-01902495v1
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Towards handling artefacts in Convolutional Neural Networks-based MRS quantification

Nima Hatami , Michaël Sdika , Hélène Ratiney

ISMRM MRS Workshop, Oct 2018, Utrecht, Netherlands

Communication dans un congrès hal-01904680v1

MRI-based radiomic to assess lipomatous soft tissue tumors malignancy: a pilot study

Benjamin Leporq , Amine Bouhamama , Fabrice Lame , Catherine Bihane , Michael Sdika et al.

International Society of Magnetic Resonance in Medicine and European Society of Magnetic Resonance in Medicine and Biology joint Annual Meeting, Jun 2018, Paris, France

Communication dans un congrès hal-01921659v1
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Automatic Segmentation of the Cerebral Ventricle in Neonates Using Deep Learning with 3D Reconstructed Freehand Ultrasound Imaging

Matthieu Martin , Bruno Sciolla , Michaël Sdika , Xiaoyu Wang , Philippe Quétin et al.

2018 IEEE International Ultrasonics Symposium (IUS), Oct 2018, Kobe, Japan. pp.1-4, ⟨10.1109/ULTSYM.2018.8580214⟩

Communication dans un congrès hal-02043054v1
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Semi-supervised learning for segmentation under semantic constraint

Pierre-Antoine Ganaye , Michaël Sdika , Hugues Benoit-Cattin

MICCAI, Sep 2018, Grenada, Spain

Communication dans un congrès hal-01904641v1

Automatic Detection of the Spinal Cord Centerline using Machine Learning and Global Nonlinear Optimization

Michaël Sdika , V. Callot

Recherche en Imagerie et Technologies pour la Santé - RITS 2017, Mar 2017, Lyon, France

Communication dans un congrès hal-01721389v1

3D MRI Segmentation of muscle through 2D multi-label propagation at 7T

Augustin C. Ogier , Alexandre Fouré , Michaël Sdika , Arnaud Le Troter , Bendahan David

34th Annual Scientific Meeting of the European Society of Magnetic Resonance in Medicine and Biology, European Society of Magnetic Resonance in Medicine and Biology, Oct 2017, Barcelone, Spain

Communication dans un congrès hal-04077604v1

OptiC: Robust and Automatic Spinal Cord Localization on a Large Variety of MRI Data Using a Distance Transform Based Global Optimization

Charley Gros , Benjamin de Leener , Sara Dupont , Allan R. Martin , Michael G. Fehlings et al.

Medical Image Computing and Computer-Assisted Intervention − MICCAI 2017, Sep 2017, Québec, Canada. pp.712-719, ⟨10.1007/978-3-319-66185-8_80⟩

Communication dans un congrès hal-01713965v1

Robust real time motion compensation for intraoperative video processing during neurosurgery

Michaël Sdika , Laure Alston , Laurent Mahieu-Williame , Jacques Guyotat , David Rousseau et al.

IEEE 13th International Symposium on Biomedical Imaging (ISBI 2016), Apr 2016, Prague, Czech Republic. ⟨10.1109/ISBI.2016.7493445⟩

Communication dans un congrès hal-01451713v1

Improving the spatial resolution and SNR of rat brain T2-weighted MR images: application of a super-resolution method

E. van Reeth van Reeth , Michaël Sdika , S. Gaillard , P.-H. Luppi , P.-A. Libourel et al.

ISMRM 23rd Annual Meeting & Exhibition, May 2015, Toronto, Canada

Communication dans un congrès hal-01288505v1

Multiple labels point-set registration

E. van Reeth van Reeth , M Sdika , P.-H. Luppi , P.-A. Libourel , O. Beuf

2015 IEEE 12th International Symposium on Biomedical Imaging (ISBI), Apr 2015, New-York, United States. pp.609 - 612, ⟨10.1109/ISBI.2015.7163947⟩

Communication dans un congrès hal-01272177v1

Amélioration de résolution spatiale et SNR d’images cérébrales pondérées T2 de rat : application de la super-résolution

Eric van Reeth van Reeth , Michaël Sdika , Sophie Gaillard , Pierre-Hervé Luppi , Paul-Antoine Libourel et al.

2ème Congrès de la SFRMBM, Mar 2015, Grenoble, France

Communication dans un congrès hal-01288527v1

MNI-Poly-AMU Average Anatomical Template for Automatic Spinal Cord Measurements

V.S. Fonov , A. Le Troter , M. Taso , Gaëtan Lévêque , M. Benhamou et al.

ISMRM-ESMRMB Annual Meeting 2014, May 2014, Milan, Italy

Communication dans un congrès hal-01117634v1

Atlas of White-Matter Tracts in the Human Spinal Cord

M. Benhamou , V.S. Fonov , M. Taso , A. Le Troter , Michaël Sdika et al.

ISMRM-ESMRMB Annual Meeting 2014, May 2014, Milan, Italy

Communication dans un congrès hal-01117699v1

Validation of a 2D Spinal Cord Probabilistic Atlas. Application to FA Measurement and VBM Study of the GM Atrophy Occurring with Age

M. Taso , A. Le Troter , Michaël Sdika , V.S. Fonov , J. Cohen-Adad et al.

ISMRM-ESMRMB Annual Meeting 2014, May 2014, Milan, France

Communication dans un congrès hal-01117689v1

Démonstrateur en imagerie à vocation diagnostique dans le cadre de l'AVC

C. Frindel , H. Rositi , Michaël Sdika , F. Chauveau , T.-H. Cho et al.

4èmes Journées Démonstrateurs 2013, Jun 2013, Angers, France

Communication dans un congrès hal-00849981v1

Liver perfusion quantification with MR-DCE imaging at 3.0 T for liver fibrosis assessment in patients with chronic liver diseases

Benjamin Leporq , Franck Pilleul , Jérôme Dumortier , Olivier Guillaud , Thibaud Lefort et al.

ISMRM 21st Annual Meeting & Exhibition, Apr 2013, Salt-Lake City, United States. pp.3911

Communication dans un congrès hal-01128036v1

Towards a biochemical and structure specific quantitative analysis of the mouse brain using Magnetic Resonance Spectroscopic Imaging at 11.7T

H. Ratiney , Michaël Sdika , O. Beuf , Y. Le Fur , S. Cavassila

Journées Thématiques GDR "Imagerie in vivo" (IMAGIV), 2011, Paris, Unknown Region

Communication dans un congrès hal-01879479v1

Optimal Recombination of Multi-Coils CSI Data using Image Based Sensitivity Map

Michaël Sdika , Y. Le Fur , P. . Cozzone

20th Annual meeting of the ISMRM, 2011, Montreal, Canada. pp.3478

Communication dans un congrès hal-01902502v1

Vascular Alterations and Recruitment in Spinal Cord Injury Revealed by Multislice Arterial Spin Labeling (ASL) Perfusion Imaging

Guillaume Duhamel , Tanguy Marqueste , Michaël Sdika , M. Tachrount , P. Decherchi et al.

ISMRM-ESMRMB Joint Annual Meeting, 2011, Stockholm, Sweden. pp.5092

Communication dans un congrès hal-01902500v1

Multi Atlas Segmentation of Rat Leg Muscles

Michaël Sdika , A. Tonson , P. . Cozzone , D. Bendahan

20th Annual meeting of the ISMRM, 2011, Montreal, Canada. pp.2562

Communication dans un congrès hal-01902503v1

Segmentation of the Structure of the Mouse Spinal Cord on DTI images

Michaël Sdika , V. Callot , M Hebert , Guillaume Duhamel , P.J. Cozzone

ISMRM-ESMRMB Joint Annual Meeting, 2010, Stockholm, Sweden. pp.5115

Communication dans un congrès hal-01902504v1

Short Echo Time H1 Chemical Shift Imaging data quantification in the mouse brain at 11.7T using a constrained parametric macromolecular model

H. Ratiney , Y. Le Fur , Michaël Sdika , S. Cavassila

ISMRM-ESMRMB Joint Annual Meeting, 2010, Stockholm, Sweden

Communication dans un congrès hal-01879492v1

A Fully Automated White Matter/Gray Matter Segmentation of Mice Spinal Cord on DTI Images

Michaël Sdika , V. Callot , M Hebert , Guillaume Duhamel , P.J. Cozzone

ISMRM-ESMRMB Joint Annual Meeting, 2010, Stockholm, Sweden. pp.442

Communication dans un congrès hal-01902505v1

Towards structure specific macromolecular content of mouse brain from Chemical Shift Imaging data at 11.7T

H. Ratiney , Michaël Sdika , O. Beuf , Y. Le Fur , S. Cavassila

ISMRM, 2009, Hawai, United States. pp.3293

Communication dans un congrès hal-01879496v1

Quantitative assessment of the brain macromolecular content in a mouse model of neuro-inflammation from chemical shift imaging data at 11.7T

H. Ratiney , Y. Le Fur , Michaël Sdika , M. Touret , A. Bernard et al.

ESMRMB, 2009, Antalya, Turkey. pp.39

Communication dans un congrès hal-01879500v1

Effective Voigt model estimation using multiple random starting values and parameter bounds settings for in vivo hepatic 1H Magnetic Resonance Spectroscopy data

H. Ratiney , A. Bucur , Michaël Sdika , O. Beuf , F. Pilleul et al.

IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2008, Paris, France. pp.1529-1532, ⟨10.1109/ISBI.2008.4541300⟩

Communication dans un congrès hal-01879508v1

Regional Estimation of T1 Metabolite Relaxation using 2D MRSI and a Bootstrap Approach at 1.5T

H. Ratiney , S.M. Noworolski , Michaël Sdika , R. Srinivasan , R.G. Henry et al.

Int. Soc. Magnetic Resonance in Medicine, 14th Scientific Meeting and Exhibition, 2006, Seattle, Washington, USA, Unknown Region

Communication dans un congrès hal-01879435v1

PhotoMole: retrieval from a database of natural images

Matthijs Douze , Michaël Sdika , Cordelia Schmid

CVPR'05 - IEEE Computer Society Conference on Computer Vision and Pattern Recognition, Jun 2005, San Diego, United States. pp.1-4

Communication dans un congrès hal-01902510v1

Semi-Parametric estimation in In vivo MR Spectroscopy

H. Ratiney , E. Capobianco , Michaël Sdika , H. Rabeson , C. Cudalbu et al.

ProRISC, IEEE Benelux, 2005, Veldhoven, The, Netherlands. pp.658-667

Communication dans un congrès hal-01879442v1
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A-priori Free Spectral Unmixing based on Tensor Low-rank Decomposition for Intraoperative Hyperspectral Functional Imaging

Charly Caredda , Jérémy E Cohen , Michaël Sdika , Jacques Guyotat , Thiébaud Picart et al.

ISOTT 2025, Aug 2025, Thessaloniki, Greece

Poster de conférence hal-05434416v1
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Liver Steatosis Assesment for Transplantation : Vitamin A Fluorescence and Near-Infrared Spectroscopy

Antoine Uzel , Michaël Sdika , Pauline Brige , Sophie Chopinet , Arthur Gautheron et al.

ESOT 2025, Jun 2025, Londres, United Kingdom

Poster de conférence hal-05424000v1

Assessment of Liver Graft Viability through Fluorescence-Based Cellular Function Monitoring

Antoine Uzel , M. Sdika , G. Rossignol , X. Muller , N. Boulanger et al.

WTC 2025, Aug 2025, San Francisco, United States. American Journal of Transplantation, 25 (8), pp.S570, 2025, ⟨10.1016/j.ajt.2025.07.1330⟩

Poster de conférence hal-05423794v1
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Domain adaptation for MRS deep learning quantification methods

Slim Hachicha , Michaël Sdika , Hélène Ratiney

ESMRMB 2025, Oct 2025, Marseille, France

Poster de conférence hal-05313762v1
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Monitoring Liver Viability: Fluorescence Spectroscopy of Cellular Metabolites in Ischemia-Reperfusion

Antoine Uzel , Olivier Lopez , Arthur Gautheron , Guillaume Rossignol , Xavier Muller et al.

ESOT 2025, Jun 2025, Londres, United Kingdom

Poster de conférence hal-05423970v1

Combining NIR Spectroscopy and Fluorescence for Liver Steatosis Assessment

Antoine Uzel , M. Sdika , Olivier Lopez , Sophie Chopinet , Pauline Brige et al.

WTC 2025, Aug 2025, San Francisco, United States. American Journal of Transplantation, 25 (8), pp.S747, 2025, ⟨10.1016/j.ajt.2025.07.1763⟩

Poster de conférence hal-05423804v1
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Latent space separation for tissue characterization in ultrasound images using deep learning

Nicolas Moyne , Michaël Sdika , Pauline Muleki Seya , Valentine Wargnier-Dauchelle

International Ultrasonic Symposium, Sep 2025, Utrecht, Netherlands

Poster de conférence hal-05495349v1
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Automated registration of intraoperative optical images with preoperative MRI

Charly Caredda , Eric Van-Reeth , Fernand Fort , Michaël Sdika , Thiébaud Picart et al.

SFRMBM 2025, Mar 2025, Saint-Malo, France

Poster de conférence hal-05434396v1
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HyperProbe: Transforming brain surgery by advancing functional-guided neuronavigational imaging

Charly Caredda , Luca Giannoni , Frédéric Lange , Ivan Ezhov , Adithep Kawinkij et al.

RITS 2024, Jun 2024, Aubière / Clermont-Ferrand, France

Poster de conférence hal-04958946v1
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Robust Unsupervised Image to Template Registration Without Image Similarity Loss

Slim Hachicha , Célia Le , Valentine Wargnier-Dauchelle , Michaël Sdika

Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale, IABM, Feb 2024, Grenoble, France

Poster de conférence hal-04531824v1

Quantification de graisse pour la stéatose hépatique par spectroscopie proche infrarouge en réflectance diffuse

Antoine Uzel , Michaël Sdika , Sophie Chopinet , Olivier Lopez , Bruno Montcel

RITS 2024, Jun 2024, Aubières, France

Poster de conférence hal-05442274v1
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Construction et apprentissage sous contraintes de réseaux monotones pour une classification interprétable et la détection d'anomalies

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , François Cotton , Michaël Sdika

Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale, Mar 2024, Grenoble, France

Poster de conférence hal-04531799v1

Une contrainte faiblement supervisée sur les attributions basées sur le gradient pour une classification interprétable et la détection d'anomalies

Valentine Wargnier-Dauchelle , Thomas Grenier , Françoise Durand-Dubief , Francois Cotton , Michael Sdika

Colloque Français d'Intelligence Artificielle en Imagerie Biomédicale (IABM 2023), Mar 2023, Paris, France

Poster de conférence hal-04239875v1
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Digital modeling of a heterogeneous and dynamic brain phantom: application to the choice of an RGB camera for intraoperative functional brain mapping studies

C. Caredda , Laurent Mahieu-Williame , Raphaël Sablong , Michaël Sdika , Bruno Montcel et al.

European Conferences on Biomedical Optics 2023, Jun 2023, Munchen, Germany. SPIE, pp.76, 2023, ⟨10.1117/12.2670750⟩

Poster de conférence hal-04181637v1
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Experimental decorrelation requirement for robust estimation of fluorophores using multiple-wavelength excitation fluorescence spectroscopy

Arthur Gautheron , Michaël Sdika , Jacques Guyotat , Thiébaud Picart , Laure Alston et al.

Diffuse Optical Spectroscopy and Imaging, Jun 2023, Munich, France. SPIE; SPIE, Proc. SPIE, pp.87, 2023, ⟨10.1117/12.2670879⟩

Poster de conférence hal-04187600v1
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Towards quantitative multispectral excitation fluorescence spectroscopy for intraoperative assistance in glioma resection in neurosurgery

Arthur Gautheron , Mathieu Hébert , Michaël Sdika , Vincent Duveiller , Lionel Simonot et al.

Journée partenariat du LabEx PRIMES, Jun 2022, Lyon, France

Poster de conférence hal-03700745v1
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Comparison of intraoperative functional brain map obtained with RGB imaging with preoperative functional brain map obtained with functional magnetic Resonance imaging

Anne Josset , C. Caredda , Eric van Reeth van Reeth , L. Mahieu-Williame , Raphaël Sablong et al.

fNIRS 2021, Oct 2021, London, United Kingdom

Poster de conférence hal-03420561v1
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Real time intraoperative functional brain mapping using a RGB camera

C. Caredda , L. Mahieu-Williame , R. Sablong , M Sdika , J. Guyotat et al.

Colloque RITS, May 2019, Tours, France

Poster de conférence hal-02142491v1
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Intraoperative functional brain mapping based on RGB imaging

C. Caredda , L. Mahieu-Williame , R. Sablong , M Sdika , J. Guyotat et al.

fNIRS UK, Sep 2019, Birmingham, United Kingdom

Poster de conférence hal-02894964v1
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Neuroimagerie fonctionnelle multispectrale interventionnelle

C. Caredda , L. Mahieu-Williame , R. Sablong , M Sdika , L. Alston et al.

OptDiag 2018, May 2018, Paris, France

Poster de conférence hal-02894966v1

MRI-Based Radiomic to Assess Lipomatous Soft Tissue Tumors Malignancy: A Pilot Study

Benjamin Leporq , Amine Bouhamama , F. Lame , Catherine Bihane , Michaël Sdika et al.

Forum de la recherche en Cancérologie 2018, Apr 2018, Villeurbanne, France

Poster de conférence hal-01990614v1

Segmentation des muscles individuels en IRM basée sur des approches de recalage non-linéaire

Augustin C. Ogier , Michaël Sdika , Alexandre Fouré , Arnaud Le Troter , David Bendahan

3ème Congrès de la Société Française de Résonance Magnétique en Biologie et Médecine (SFRMBM), Mar 2017, Bordeaux, France. 2017

Poster de conférence hal-01560300v1

An accurate supervised segmentation of 3D individual lower leg muscles from 7T-MRI using label propagation

Augustin C. Ogier , Alexandre Fouré , Michaël Sdika , Arnaud Le Troter , David Bendahan

MYO-MRI, Imaging in Neuromuscular Disease, Nov 2017, Berlin, Germany

Poster de conférence hal-02000564v1

Segmentation d’images IRM à 7T des muscles individuels basée sur des approches de propagation de masques

Augustin C. Ogier , Alexandre Fouré , Michaël Sdika , Arnaud Le Troter , David Bendahan

15es Journées de la Société Française de Myologie (JSFM), Nov 2017, Colmar, France

Poster de conférence hal-02000426v1

Repeatability and reproducibility of in vivo magnetic resonance T1rho relaxation time measurements of hip cartilage at 3T

Angéline Nemeth , Lucy Di Marco , Denis Grenier , Michaël Sdika , Olivier Beuf et al.

ISMRM 2016, May 2016, Singapour, Singapore. pp.Abstract #4490

Poster de conférence hal-01434177v1